Re: [R] how to import/read .vcf files in R

Thanks for the tip! On Tue, Jan 28, 2020 at 11:36 AM Bert Gunter wrote: > > As this apparently involves genomic data, I would suggest that you ask this > on the BioConductor site: > https://www.bioconductor.org/help/ > especially if you don't get effective help here. > > Bert Gunter > > > > > On

Re: [R] how to import/read .vcf files in R

As this apparently involves genomic data, I would suggest that you ask this on the BioConductor site: https://www.bioconductor.org/help/ especially if you don't get effective help here. Bert Gunter On Tue, Jan 28, 2020 at 9:29 AM Ana Marija wrote: > Hello, > > I tried doing: > > library(vcfR

[R] how to import/read .vcf files in R

Hello, I tried doing: > library(vcfR) > vcf <- > read.vcfR("ALL.chr1.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.vcf", > verbose = FALSE ) but this takes forever to load and I am not sure it is even working. Any other suggestion on how I can read in .vcf file in R? Thanks Ana _