Re: [R] Help for funnel plot

2022-05-15 Thread Jim Lemon
Hi, Looking at the help page for "funnel", I first thought that the "shade" argument would be the one. However, that seems to take a specific color. Perhaps the function computes the shading from that. I have never used the "funnel" function myself, so I don't have a good idea of how that left-to-r

Re: [R] Help for funnel plot

2022-05-15 Thread De Simone
Hi Rui Thank you. The default for the shade and hilinees is ok, that is why I didn't add it. I attached the example image as PDF my question is how to get gradient colors for the background like the one attached And again how to get different types of lines for the Reference and confidence. The ar

Re: [R] Help for funnel plot

2022-05-15 Thread Jim Lemon
Hi, There are a number of functions that will transform numeric values into colors. One is color.scale in the plotrix package. This accepts a vector of numeric values and linearly transforms them into one or more ranges of colors. The resulting colors can then be passed to the appropriate arguments

Re: [R] Help for Use of R software

2021-06-06 Thread Sorkin, John
to faxing) From: R-help on behalf of Lee Simon Sent: Sunday, June 6, 2021 4:29 AM To: r-help@r-project.org Subject: [R] Help for Use of R software Dear Sir/Madam, May I seek for your kind help for the use of R software for conducting two-proportional

Re: [R] Help for Use of R software

2021-06-06 Thread David Winsemius
I get the sense that you need further background on statistical testing issues and suggest this resource: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3510268/ -- David Winsemius, MD, MPH On 6/6/21 10:06 AM, Lee Simon wrote: Dear Sir/Madam, May I seek for your kind help for the use of R s

Re: [R] Help for Use of R software

2021-06-06 Thread David Winsemius
A google-search of the term brings up as its first hit a link to a page on the rdocumentation.org website that indicates that theTrialSize package(version1.4) has a function named "TwoSampleProportion.NIS". If you executed these

[R] Help for Use of R software

2021-06-06 Thread Lee Simon
Dear Sir/Madam, May I seek for your kind help for the use of R software for conducting two-proportional z-test which is test for non-inferiority? What function will the R software provide for doing such test with 95%CI and P-value calculated. Thank you very much! With kindest regards, Simon

[R] Help for Use of R software

2021-06-06 Thread Lee Simon
Dear Sir/Madam, May I seek for your kind help for the use of R software for conducting two-proportional z-test which is test for non-inferiority? I have found one saying using function (TwoSampleProportion.NIS(alpha, beta, p1, p2, k, delta, margin) but the software said there is not such function.

[R] Help for storing value in the matrix

2021-03-24 Thread Ablaye Ngalaba
Hello, I need help with my R programming code. I just have a problem storing the matrix calculate Gsigma[m] in sigma. Seeing what I have coded I find NA value which doesn't generate me errors. library(MASS) # Creation of the linear kernel function #Function N°1 Kernellin<-function(X,Y){ retu

Re: [R] help for R code

2020-10-13 Thread Eric Berger
Hi Ablaye, The CRAN repository has thousands of available R packages. To help people find relevant packages amid such a huge collection, there are some 'task view' pages that group packages according to a particular task. I am guessing that you are interested in kernels because of their use in mach

[R] help for R code

2020-10-13 Thread Ablaye Ngalaba
Good morning dear administrators, Please help me to code this code in R. I use in this file the redescription function Φ which by making a scalar product gives a . You can also choose instead of the redescription function Φ a kernel k(x,x). Sincerely [[alternative HTM

Re: [R] Help for forecasting by SVM

2020-07-15 Thread Bert Gunter
Please read and follow the posting guide linked below when asking for help here. This is not a "we do the work for you" forum. Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comi

[R] Help for forecasting by SVM

2020-07-15 Thread Md. Moyazzem Hossain
Dear Concern, I am interested to forecast a time series by SVM. I have used library e1071 and svm.pred. Please help me by recommending an R code. Thanks in advance. *Md* [[alternative HTML version deleted]] __ R-help@r-project.org mailing li

Re: [R] Help for pdf conversion

2019-11-01 Thread Thomas Subia
Jim, That works well! Thanks again for your help! Thomas Subia -Original Message- From: Jim Lemon Sent: Wednesday, October 30, 2019 11:14 PM To: Thomas Subia Cc: r-help@r-project.org Subject: Re: [R] Help for pdf conversion Hi Thomas, Perhaps you should be doing something like

Re: [R] Help for pdf conversion

2019-10-30 Thread Jim Lemon
Hi Thomas, Perhaps you should be doing something like writeLines(txt[1],...) or just: sink("10619.txt") cat(txt[1]) sink() Jim On Thu, Oct 31, 2019 at 4:48 PM Thomas Subia wrote: > > Colleagues, > > I'm trying to convert a pdf to a text file with the following code. > > # pdf to excel > library

[R] Help for pdf conversion

2019-10-30 Thread Thomas Subia
Colleagues, I'm trying to convert a pdf to a text file with the following code. # pdf to excel library(pdftools) # pdf to excel library # set working directory setwd("C:/Users") # input pdf txt <- pdf_text("C:/Users/10619.pdf") cat(txt[1]) write.table(cat(txt[1]),file="10619.txt",sep= "\t",row.na

Re: [R] Help for coding

2019-04-12 Thread Rui Barradas
Hello, Remove ind from the calculations. And maybe substitute length(Variable) for 1312. And standard deviations is the square root of the variance, you are missing the square root. Hope this helps, Rui Barradas Às 17:50 de 12/04/2019, bienvenidoz...@gmail.com escreveu: Dear all, I am tryi

[R] Help for coding

2019-04-12 Thread bienvenidoz...@gmail.com
Dear all, I am trying to write the script to calculate the mean and the standard deviation without using the functions mean and standard deviations since morning. Someone can help These scripts below are what i did but when i run and check with the function mean and standard deviation it is not

Re: [R] help for

2016-12-30 Thread David Winsemius
> On Dec 30, 2016, at 4:24 PM, Elham - wrote: > > yes me too,but I do not have time to install and learn linux,I need tutorial > based on windows Fine. But you are asking in the wrong place. It's a BioC question. Most of us here are not Bioc users. Use the forum that is designed for that purp

Re: [R] help for

2016-12-30 Thread Elham - via R-help
yes me too,but I do not have time to install and learn linux,I need tutorial based on windows On Saturday, December 31, 2016 3:50 AM, David Winsemius wrote: > On Dec 30, 2016, at 9:57 AM, Elham - via R-help wrote: > > hi all, I am following > http://bioinformatics.knowledgeblog.org

Re: [R] help for

2016-12-30 Thread David Winsemius
> On Dec 30, 2016, at 9:57 AM, Elham - via R-help wrote: > > hi all, I am following > http://bioinformatics.knowledgeblog.org/2011/06/20/analysing-microarray-data-in-bioconductor/ That page was designed by and for someone with Linux installation. To quote from the opening paragraph: "Some fa

Re: [R] help for

2016-12-30 Thread Elham - via R-help
actually I do not work with linux. do you know same of this tutorial for windows? On Friday, December 30, 2016 10:16 PM, John McKown wrote: On Fri, Dec 30, 2016 at 12:08 PM, Sarah Goslee wrote: This isn't an R question, but a linux question. Open a new terminal window: The direction

Re: [R] help for

2016-12-30 Thread John McKown
On Fri, Dec 30, 2016 at 12:08 PM, Sarah Goslee wrote: > This isn't an R question, but a linux question. > > Open a new terminal window: > The directions you are following tell you how to do that for the > Ubuntu linux being used, right at the beginning: > > Open up a terminal (Applications->Acces

Re: [R] help for

2016-12-30 Thread Sarah Goslee
This isn't an R question, but a linux question. Open a new terminal window: The directions you are following tell you how to do that for the Ubuntu linux being used, right at the beginning: Open up a terminal (Applications->Accessories->Terminal from the the toolbar) As for your command, the $ i

[R] help for

2016-12-30 Thread Elham - via R-help
hi all, I am following  http://bioinformatics.knowledgeblog.org/2011/06/20/analysing-microarray-data-in-bioconductor/  I need to download phenotypic data in the form of text file that describe chip names, and the source of the biological samples as well as probe that hybridised to them. I can not

Re: [R] help for fine mappting

2016-06-17 Thread PIKAL Petr
From: greg holly [mailto:mak.hho...@gmail.com] Sent: Thursday, June 16, 2016 10:04 PM To: PIKAL Petr Subject: Re: [R] help for fine mappting Hi Petr; I got chance to try your codes. Once again thanks a lot. It seems the results3 is correct after I modified the "sel" as sel <- map$

Re: [R] help for fine mappting

2016-06-16 Thread PIKAL Petr
IKAL Petr Subject: Re: [R] help for fine mappting Hi PIKAL; Thanks so much your writing. I am sorry if I could not explain precisely. All information in ref file are exist in map file. So they are in common. Ref file has about 560 and map file has 27 million rows.That is CHR column common in bo

Re: [R] help for fine mappting

2016-06-16 Thread PIKAL Petr
rg > Subject: [R] help for fine mappting > > dear all; > > > I am sorry for this posting. I have got help from Jim, Bert, Jeff and PIKAL > on similar issue before. I tried to modify Jim`s code to the real data but > it did not work. Now I am posting first two rows the

[R] help for fine mappting

2016-06-15 Thread greg holly
dear all; I am sorry for this posting. I have got help from Jim, Bert, Jeff and PIKAL on similar issue before. I tried to modify Jim`s code to the real data but it did not work. Now I am posting first two rows the imitation of real data using dput() format (please see at the bottom). I have two

Re: [R] Help for survival curves for the survfit object‏

2016-02-08 Thread Göran Broström
On 2016-02-08 14:11, 于慧琳 wrote: Hi guy,I have some problems when plotting survival curves for the survfit object.My survfit model is as follows:fit6<-survfit(Surv(Survival_time_year_,event)~Race_1_Desc,data=data6)Race_1_Desc is a indicator variable which has 0 and 1 values.However, in my datase

[R] Help for survival curves for the survfit object‏

2016-02-08 Thread 于慧琳
Hi guy,I have some problems when plotting survival curves for the survfit object.My survfit model is as follows:fit6<-survfit(Surv(Survival_time_year_,event)~Race_1_Desc,data=data6)Race_1_Desc is a indicator variable which has 0 and 1 values.However, in my dataset, all of the Race_1_Desc are of

Re: [R] help for lay person assisting R user with disability

2015-06-18 Thread Courtney Bryant
ursday, June 18, 2015 12:42 PM To: John McKown Cc: Courtney Bryant; r-help@R-project.org Subject: Re: [R] help for lay person assisting R user with disability Hi Courtney and John, The RStudio environment mentioned below will not work with speech output (I tried with Window-Eyes awhile ago). Some

Re: [R] help for lay person assisting R user with disability

2015-06-18 Thread Paul Murrell
Hi Jonathon Godfrey has published some information and guidelines on the accessibility of R (and other stat software), e.g., ... http://r-resources.massey.ac.nz/StatSoftware/ http://journal.r-project.org/archive/2013-1/godfrey.pdf Paul On 06/19/15 02:32, Courtney Bryant wrote: Good Morning,

Re: [R] help for lay person assisting R user with disability

2015-06-18 Thread Bert Gunter
Given that neither you nor the student are (skilled?) R users, I think you would do better contacting someone locally for help -- there will be many in the statistics and social sciences departments (among others). There are several R packages that interface with Excel (e.g. RExcel), but it may me

Re: [R] help for lay person assisting R user with disability

2015-06-18 Thread Clint Bowman
Almost 20 years ago my son was in the DO-IT program at the University of Washington . They have been very proactive in reaching out to other institutions. They have been solving problems such as yours and I suspect can suggest several workable solutions. Cli

Re: [R] help for lay person assisting R user with disability

2015-06-18 Thread Liz Hare
Hi Courtney and John, The RStudio environment mentioned below will not work with speech output (I tried with Window-Eyes awhile ago). Some of my clients use it but I have no experience with it. Since the student is partially sighted, they might be able to customize the environment with big font

Re: [R] help for lay person assisting R user with disability

2015-06-18 Thread Duncan Murdoch
On 18/06/2015 11:32 AM, Courtney Bryant wrote: > Good Morning, > I am currently working with a disabled R user who is a student here at CMU. > The student has both sight and mobility issues. The student has asked for an > assistant who is well versed in R to enter data for her, which we are hav

Re: [R] help for lay person assisting R user with disability

2015-06-18 Thread John McKown
On Thu, Jun 18, 2015 at 9:32 AM, Courtney Bryant wrote: > Good Morning, > I am currently working with a disabled R user who is a student here at > CMU. The student has both sight and mobility issues. The student has > asked for an assistant who is well versed in R to enter data for her, which >

Re: [R] help for lay person assisting R user with disability

2015-06-18 Thread David L Carlson
7840-4352 -Original Message- From: R-help [mailto:r-help-boun...@r-project.org] On Behalf Of PIKAL Petr Sent: Thursday, June 18, 2015 10:04 AM To: Courtney Bryant; r-help@R-project.org Subject: Re: [R] help for lay person assisting R user with disability Hi I believe that others come with

Re: [R] help for lay person assisting R user with disability

2015-06-18 Thread Gabor Grothendieck
On Thu, Jun 18, 2015 at 10:32 AM, Courtney Bryant wrote: > Good Morning, > I am currently working with a disabled R user who is a student here at > CMU. The student has both sight and mobility issues. The student has > asked for an assistant who is well versed in R to enter data for her, which

Re: [R] help for lay person assisting R user with disability

2015-06-18 Thread PIKAL Petr
t.org] On Behalf Of > Courtney Bryant > Sent: Thursday, June 18, 2015 4:33 PM > To: r-help@R-project.org > Subject: [R] help for lay person assisting R user with disability > > Good Morning, > I am currently working with a disabled R user who is a student here at > CMU. The

[R] help for lay person assisting R user with disability

2015-06-18 Thread Courtney Bryant
Good Morning, I am currently working with a disabled R user who is a student here at CMU. The student has both sight and mobility issues. The student has asked for an assistant who is well versed in R to enter data for her, which we are having a hard time finding. I would like information fro

Re: [R] Help for x axis

2014-11-18 Thread David L Carlson
logy Texas A&M University College Station, TX 77840-4352 -Original Message- From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On Behalf Of Olivier Sent: Monday, November 17, 2014 9:24 AM To: r-help@r-project.org Subject: [R] Help for x axis Hi, I want to customize x a

Re: [R] Help for x axis

2014-11-18 Thread David L Carlson
=TRUE) axis(1, 0:4, c("Smoke", "-", "+", "-", "+"), line=2, lwd=0, cex.axis=1.25, xpd=TRUE) David -Original Message- From: Olivier [mailto:olivier.lerou...@ymail.com] Sent: Monday, November 17, 2014 4:39 PM To: David L Carlson Subje

[R] Help for x axis

2014-11-17 Thread Olivier
Hi, I want to customize x axis to scientific data. I do experiments with different triggers. As others publications, I want that there is one line for each trigger with the sign "-" or "+" to show if the trigger is used or no. You will find attached an exemple. Please find below a data.frame y

Re: [R] Help for i-else iwth more than one alternative

2014-10-16 Thread MacQueen, Don
If I understand what you¹re trying to do, then I believe this will do the same as your little loop: opt.fc <- fc opt.fc[rmax < 0.1] <- fc1[rmax < 0.1] (this is an example of vectorization, and it¹s fundamental to how R works and the power of R) Then to extend it, use the same method opt.f

[R] Help for i-else iwth more than one alternative

2014-10-16 Thread moeby
I try to run an if-else command line where the else argument should be the corresponding value of the pmax command. # #opt.fc is the optimal forecast #rmax is the vector of the maximized r squared from pmax-command of 2 data sets containing r squares #fc1 are the estimates of

[R] Help for how to use "snowfall" package

2014-01-28 Thread WANG, YINDING
Hi there, I have some question about how to use this package: My code structure is as follows: rm(list=ls()) set.seed(2014) library(snowfall) # #part 1: generate the initial value for simulation #part 2: some functions will be used in the simulation #simulation part, start from "

Re: [R] help for compare regression coefficients across groups

2013-10-10 Thread David Winsemius
On Oct 10, 2013, at 3:44 AM, Andreia Fonseca wrote: > Dear all > > I have data related to cell count across time in 2 different types of > cells. I have transformed the count data using a log > and I want to test the H0: B cell_ttype1=Bcell_type2 across time > > for that I am fitting the follo

[R] help for compare regression coefficients across groups

2013-10-10 Thread Andreia Fonseca
Dear all I have data related to cell count across time in 2 different types of cells. I have transformed the count data using a log and I want to test the H0: B cell_ttype1=Bcell_type2 across time for that I am fitting the following model fit_all<-lm(data$count~data$cell_type+data$time+data$cel

Re: [R] Help for a function

2013-08-29 Thread Rui Barradas
he datasets for all country in the same dataset Maurice De : Rui Barradas À : Jim Lemon Cc : anoumou ; r-help@r-project.org Envoyé le : Mercredi 5 décembre 2012 16h26 Objet : Re: [R] Help for a function Hello, Also, t1 and min(xt) do not vary inside

Re: [R] R help for creating expression data of Differentially expressed genes

2013-05-08 Thread Vivek Das
ut_dat2<-merge(dat1[,1:4],dat2,by="ID") > identical(out_dat,out_dat2) > #[1] TRUE > A.K. > > > > > > ________ > From: Vivek Das > To: arun > Cc: R help > Sent: Tuesday, May 7, 2013 6:07 PM > Subject: Re: R help for creating expression data of Differentiall

Re: [R] R help for creating expression data of Differentially expressed genes

2013-05-07 Thread arun
tringsAsFactors=FALSE)  out_dat2<-merge(dat1[,1:4],dat2,by="ID")  identical(out_dat,out_dat2) #[1] TRUE A.K. From: Vivek Das To: arun Cc: R help Sent: Tuesday, May 7, 2013 6:07 PM Subject: Re: R help for creating expression data of Different

Re: [R] R help for creating expression data of Differentially expressed genes

2013-05-07 Thread Vivek Das
X30 > #1 14 27 3 21 6 44 33 42 10 29 > #2 48 13 8 47 18 9 23 9 44 3 > #3 25 14 31 19 14 6 26 13 6 49 > #4 43 28 15 6 9 19 43 21 41 21 > #5 1 27 18 3 42 5 16 39 46 47 > A.K. > > > > - Original Mes

Re: [R] R help for creating expression data of Differentially expressed genes

2013-05-07 Thread arun
Tuesday, May 7, 2013 3:45 PM Subject: R help for creating expression data of Differentially expressed genes Hi Arun, I need some help regarding R scripting. I have two data file one containing seven columns and the other containing 33. Both files have unique identifier as ID. I want to create a

Re: [R] HELP FOR COMPUTING ENVIRONMENTAL EFFICIENCY INDEX/ LUENBERGER INDEX

2013-04-05 Thread edgarfdj
Hi Wang. I hope you are OK. I'm stuck in the same problem. Did you find an answer for this question? Thanks in advance, Edgar -- View this message in context: http://r.789695.n4.nabble.com/HELP-FOR-COMPUTING-ENVIRONMENTAL-EFFICIENCY-INDEX-LUENBERGER-INDEX-tp4647883p4663437.html Sent from t

Re: [R] Help for bootstrapping‏

2013-04-04 Thread Mui Boon Loong
As attached is the txt file for the code. Regards,BL > Date: Thu, 4 Apr 2013 03:19:47 -0800 > From: jrkrid...@inbox.com > Subject: RE: [R] Help for bootstrapping‏ > To: boon_lo...@hotmail.com; r-help@r-project.org > > It looks like you formatted the code in html and it is esse

Re: [R] Help for bootstrapping‏

2013-04-04 Thread John Kane
rg > Subject: [R] Help for bootstrapping‏ > > I have a set of data for US t-bill returns and US stock returns frm > 1980-2012. I am trying to bootstrap the data and obtain the minimum > variance portfolio and repeat this portfolio 1000 times. However I am > unable to get the correct

[R] Help for bootstrapping‏

2013-04-04 Thread Mui Boon Loong
I have a set of data for US t-bill returns and US stock returns frm 1980-2012. I am trying to bootstrap the data and obtain the minimum variance portfolio and repeat this portfolio 1000 times. However I am unable to get the correct code function for the minimum variance portfolio. When I tried t

Re: [R] help for an R automated procedures

2013-02-28 Thread PIKAL Petr
can be useful sapply(sp1.loc1,scale) will give you scaled data frame Regards Petr > -Original Message- > From: r-help-boun...@r-project.org [mailto:r-help-bounces@r- > project.org] On Behalf Of Gustavo Vieira > Sent: Thursday, February 28, 2013 10:53 AM > To: r-help@r-pro

[R] help for an R automated procedures

2013-02-28 Thread Gustavo Vieira
Dear, I would like to post the following question to the r-help on Nabble (thanks in advance for the attention, Gustavo Vieira): Hi there. I have a data set on hands with 5,220 cases and I'd like to automate some procedures (but I have almost no programming knowledge). The data has some continuou

Re: [R] Help for a function

2012-12-05 Thread teko maurice
012 16h45 Objet : Re: [R] Help for a function Thanks you all   Maurice TEKO   Biostatisticien,Doctorant. Université de Liège Département des Sciences et Gestion de l'environnement 185 avenue de Longwy 6700 Arlon (Belgique) :anoumou.tekoahate...@ulg.ac.be  

Re: [R] Help for a function

2012-12-05 Thread teko maurice
ac.be   De : Rui Barradas À : Jim Lemon Envoyé le : Mercredi 5 décembre 2012 16h26 Objet : Re: [R] Help for a function Hello, Also, t1 and min(xt) do not vary inside the loop so if it enters the loop it never exits. And     res1[j] <-(a*h)     res2 <-sum( res1[j]) is eq

Re: [R] Help for a function

2012-12-05 Thread Rui Barradas
Hello, Also, t1 and min(xt) do not vary inside the loop so if it enters the loop it never exits. And res1[j] <-(a*h) res2 <-sum( res1[j]) is equivalent to res2 <- a*h so the inner-most loop is not needed at all. Hope this helps, Rui Barradas Em 05-12-2012 04:20, Jim Lemon escr

Re: [R] Help for a function

2012-12-04 Thread Jim Lemon
On 12/05/2012 01:01 AM, anoumou wrote: Hello all, I need a help. I am modeling a disease and a create a R function like that: ... But i do not get the results,i try by all means but i d'ont understant the problem. Hi anoumou, Your function provides almost no indication of what two of its five

Re: [R] Help for a function

2012-12-04 Thread Jeremy Miles
What are you expecting? What do you get? What is the problem? J On 4 December 2012 06:01, anoumou wrote: > Hello all, > I need a help. > I am modeling a disease and a create a R function like that: > > Lambda<-function (x,date1,r,h,a){ > ndate1 <- as.Date(date1, "%d/%m/%Y") > t1 <- as.nume

[R] Help for a function

2012-12-04 Thread anoumou
Hello all, I need a help. I am modeling a disease and a create a R function like that: Lambda<-function (x,date1,r,h,a){ ndate1 <- as.Date(date1, "%d/%m/%Y") t1 <- as.numeric(ndate1) x[order(x$i),] t <-x[,"t"] i <-x[,"i"] CONTAGIEUX <-x[,"CONTAGIEUX"] while ( t1 < min(t) ){ for (i

[R] HELP FOR COMPUTING ENVIRONMENTAL EFFICIENCY INDEX/ LUENBERGER INDEX

2012-10-30 Thread Wang Sonne Soazic Elise
Dear Members  I am Writing to you because I need help to compute the Malmquist Luenberger   index  with  R with my panel data of 10 central Africa countries from the year 1980 to 2008. I have three inputs and 2 outputs which one is undesirable (CO2) and the other (GDP for agriculture is the des

Re: [R] Help for Fisher's exact test

2012-07-16 Thread Steve Lianoglou
>> >> >> >> >> A.K. >> >> >> >> >> >> >> >> >> >> >> >> >> >> From: Guanfeng Wang >> To: arun >> Cc: R help >> Sent: Monday, July 16,

Re: [R] Help for Fisher's exact test

2012-07-16 Thread Guanfeng Wang
better to email them for the package they > used. I tried fisher.test(), but it is returning errors. > > > > > A.K. > > > > > > > > > > > > > > From: Guanfeng Wang > To: arun > Cc: R help > Sent:

Re: [R] Help for Fisher's exact test

2012-07-16 Thread Guanfeng Wang
ile="Analyzeddata.csv") > > > > Hope this helps you. > > A.K. > > P.S: Please send your requests to R-help rather than to a single person. > It will get more responses. > __

[R] Help for Fisher's exact test

2012-07-15 Thread Guanfeng Wang
Hi, R-help, I have a group of data from RNA-seq want to be analyzed by Fisher's exact test in R. I want to compare the significant difference of about 30, individuals in two different samples, and I have no idea how to use R, so could you please give me some suggestions or the scripts for

Re: [R] Help for string opeation

2012-06-29 Thread arun
F" A.K. - Original Message - From: Pascal Oettli To: Takatsugu Kobayashi Cc: R-help@r-project.org Sent: Friday, June 29, 2012 3:16 AM Subject: Re: [R] Help for string opeation Hello, Does 'unlist' function do what you are asking about? Regards. Le 29/06/2012 11:

Re: [R] Help for string opeation

2012-06-29 Thread Pascal Oettli
Hello, Does 'unlist' function do what you are asking about? Regards. Le 29/06/2012 11:52, Takatsugu Kobayashi a écrit : Hi R users, I appreciate if you could give me some hint/help on this string operation. Suppose I have a list of string objects in varying sizes like [[1]] [1] "A" [2] "B"

[R] Help for string opeation

2012-06-28 Thread Takatsugu Kobayashi
Hi R users, I appreciate if you could give me some hint/help on this string operation. Suppose I have a list of string objects in varying sizes like [[1]] [1] "A" [2] "B" [3] "C" [[2]] [1] "D" [2] "E" [[3]] [1] "F" Then I would like to create a vector that contains all elements like [1] "A"

Re: [R] Help for boxplot

2012-06-14 Thread S Ellison
> -Original Message- > First, i use the BOXPLOT() and SUBSET() to produce the box > plot of all the 5 funds performance individually: > ... > *So the FIRST QUESTION is how to eliminate the other 5 > strategies on the Y-aix? * either use boxplot(NetReturn~factor(Strategy),data=filtere

[R] Help for boxplot

2012-06-13 Thread adamshun
Hi guys, I am doing a project to evaluate the 7 individual fund performance from a portfolio compared with all fund performance utilizing the same strategy. Lets say in total there are 10 strategies and in the portfolio there exist 5 strategies. First, i use the BOXPLOT() and SUBSET() to produc

Re: [R] Help for numericDeriv function

2012-05-18 Thread William Dunlap
> -Original Message- > From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On > Behalf > Of Cengiz Zopluoglu > Sent: Friday, May 18, 2012 11:33 AM > To: r-help@r-project.org > Subject: Re: [R] Help for numericDeriv function > > I missed a

Re: [R] Help for numericDeriv function

2012-05-18 Thread Cengiz Zopluoğlu
I missed a couple line of codes in the previous e-mail. Here is whole code again: load <- matrix(c(3,0,1,4,1,3),nrow=3,ncol=2,byrow=TRUE) l <- matrix(nrow=nrow(load),ncol=ncol(load)) for(i in 1:nrow(load)) { for(j in 1:ncol(load)) { l[i,j]=paste("l",i,j,sep="")}} for(i in 1:nrow(load)){ for(j in

[R] Help for numericDeriv function

2012-05-18 Thread Cengiz Zopluoğlu
Hi, I am stuck on something for a couple days, I am almost about to give up. This looks simple, but I can't figure out. I hope I can get some help here. I am trying to do some symbolic and numerical derivations. Let me explain the problem. Let's say, I have a matrix as follows: > load <- matrix(

[R] Help for carying out ILS

2012-03-07 Thread Priya . Saha
Hi l would like to know from which package l would be able to carry out ILS. Regards, Priya Saha [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the postin

Re: [R] Help for R parallelization

2011-12-17 Thread Dirk Eddelbuettel
Alvaro, On 17 December 2011 at 12:23, Alvaro Jose Abackerli wrote: | Dear Sir/Madam, | | I am a Brazilian researcher working in São Paulo – Brazil. I’ve being using R-software for many years with my students in some engineering applications, but up to now we've being using only in stand-alone

Re: [R] Help for RODBC usage on mac

2011-11-25 Thread Prof Brian Ripley
Please ask about RDBMSs on R-sig-db. On 25/11/2011 06:34, Jeff Zhang wrote: Hi all, I try to use RODBC on my mac machine. I google a lot but could not find a very comprehensive tutorial. Finally, I install iODBC, but there's no Hmm, iODBC is part of Mac OS X. driver in iODBC. And I found so

[R] Help for RODBC usage on mac

2011-11-25 Thread Jeff Zhang
Hi all, I try to use RODBC on my mac machine. I google a lot but could not find a very comprehensive tutorial. Finally, I install iODBC, but there's no driver in iODBC. And I found some commercial ODBC driver. Actaully I just want to learn it ,so free driver will be suitable for me. Does anyone h

[R] help for hierarchial regression output

2011-07-03 Thread stamkiral
hi everybody, Im struggeling with hierarchial regression analysis. I need some need to interpret output consider this is my hierarchial regression analysis output: http://www.hizliupload.com/img/88056685462955425818.jpg ı want to ask question about how to interpret 2 way interaction. both in

[R] help for fgui

2011-04-12 Thread David L Lorenz
Anybody use fgui? I find it very handy. I have a question about an argument to the call to gui in the first example. The argument is argFilter, my question has to do with specifying multiple filters. The argument in that example is argFilter=list(flname="{{Text files} {.txt}}") ) #

Re: [R] r help for growth rate

2011-02-28 Thread Jim Lemon
On 02/28/2011 07:49 PM, Muzna Alvi wrote: I'm havinf a problem with a simple file i have the following data State 1960 1970 1980 1990 1 All India 35988.70 37346.00 39707.30 42321.00 2Andhra Pradesh 3431.03 3163.27 3687.23 3695.63 3 Assam 1902.93 2001.60 2278.4

[R] r help for growth rate

2011-02-28 Thread Muzna Alvi
I'm havinf a problem with a simple file i have the following data State 1960 1970 1980 1990 1 All India 35988.70 37346.00 39707.30 42321.00 2Andhra Pradesh 3431.03 3163.27 3687.23 3695.63 3 Assam 1902.93 2001.60 2278.47 2525.33 4 Bihar 5277.07 513

Re: [R] help for a loop procedure

2011-01-28 Thread Serena Corezzola
Hello Petr. First of all, thank you for your help! "If i understand you correctly, your real table U has 32 rows and you want to consider all subsets of at most 10 rows." Sorry, I wasn’t clear: I have more datasets to analyse, some of them of just 10 samples, and others of 32. So: sum(ch

Re: [R] Help for lattice. par(new=TRUE)

2011-01-28 Thread Deepayan Sarkar
On Fri, Jan 21, 2011 at 8:22 PM, Fabrice Tourre wrote: > Hi list, > I want to plot two plot in the same figure. I set par(new=TRUE). But > it does not work. > > library(lattice) > myPanel <- function(x,...) > { >       panel.histogram(x,alpha=0.4,...) >       ltext(0.4,1.5,paste("Mean=","0.05",dig

Re: [R] help for a loop procedure

2011-01-28 Thread Petr Savicky
On Thu, Jan 27, 2011 at 05:30:15PM +0100, Petr Savicky wrote: > On Thu, Jan 27, 2011 at 11:30:37AM +0100, Serena Corezzola wrote: > > Hello everybody! > > > > > > > > I?m trying to define the optimal number of surveys to detect the highest > > number of species within a monitoring season/session

Re: [R] help for a loop procedure

2011-01-27 Thread Petr Savicky
On Thu, Jan 27, 2011 at 11:30:37AM +0100, Serena Corezzola wrote: > Hello everybody! > > > > I?m trying to define the optimal number of surveys to detect the highest > number of species within a monitoring season/session. > > To do this I want to run all the possible combinations between a set

[R] help for a loop procedure

2011-01-27 Thread Serena Corezzola
Hello everybody! I’m trying to define the optimal number of surveys to detect the highest number of species within a monitoring season/session. To do this I want to run all the possible combinations between a set of samples and to calculate the total number of species for each combination of 2,

[R] Help for lattice. par(new=TRUE)

2011-01-21 Thread Fabrice Tourre
Hi list, I want to plot two plot in the same figure. I set par(new=TRUE). But it does not work. library(lattice) myPanel <- function(x,...) { panel.histogram(x,alpha=0.4,...) ltext(0.4,1.5,paste("Mean=","0.05",digit=2)),cex=0.8) ltext(0.8,1.5,paste("s.d.=","0.06",digit=2)),cex

Re: [R] Help for R plot

2011-01-18 Thread Fabrice Tourre
Hi Thanks for you suggestion. I used histograme in lattice packages. If it is possible lattice can do it, it will be better. On Mon, Jan 17, 2011 at 3:28 PM, Peter Ehlers wrote: > On 2011-01-17 02:26, Fabrice Tourre wrote: >> >> Hi all, >> How to plot as the coordinate  as in my attachment? I wan

Re: [R] Help for R plot

2011-01-17 Thread Dieter Menne
Fabrice Tourre wrote: > > How to plot as the coordinate as in my attachment? I want to trim the > coordinate and one of plot as the figure in attachment. Does any one > have such example? > http://markmail.org/message/3jn2sqoep36ckswb (for a lattice-lookalike) and package plotrix Dieter

Re: [R] Help for R plot

2011-01-17 Thread Peter Ehlers
On 2011-01-17 02:26, Fabrice Tourre wrote: Hi all, How to plot as the coordinate as in my attachment? I want to trim the coordinate and one of plot as the figure in attachment. Does any one have such example? Thanks. Maybe you're looking for something like axis.break or gap.plot in the plotri

[R] Help for R plot

2011-01-17 Thread Fabrice Tourre
Hi all, How to plot as the coordinate as in my attachment? I want to trim the coordinate and one of plot as the figure in attachment. Does any one have such example? Thanks. <>__ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-

Re: [R] HELP for repeated measure ANCOVA with varying covariate

2010-12-30 Thread Dong Xie
Dear Dror, Thank you for the suggestion!! Dong -- View this message in context: http://r.789695.n4.nabble.com/HELP-for-repeated-measure-ANCOVA-with-varying-covariate-tp3167290p3168500.html Sent from the R help mailing list archive at Nabble.com. ___

Re: [R] HELP for repeated measure ANCOVA with varying covariate

2010-12-30 Thread DrorD
Hi Dong, I have a similar question and you can find the answers received by now in this http://r.789695.n4.nabble.com/Doing-a-mixed-ANOVA-after-accounting-for-a-covariate-td3164230.html thread . dror -- View this message in context: http://r.789695.n4.nabble.com/HELP-for-repeated-measure-ANCO

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