Re: [R] automated image processing

2009-12-08 Thread Gregoire Pau
Hello Martial, Cell segmentation is not easy in many cases. Cells may overlap and contain complex structures such as organelles or cytoskeletal fibers that hinder the determination of cell membranes. There is no one-size-fits-all algorithm that can process and analyse cellular tissues in an

Re: [R] automated image processing

2009-12-08 Thread Romain Francois
Hi, Depending on what you want to do, the RImageJ package might be for you. It is a very simple wrapper around ImageJ: http://rsbweb.nih.gov/ij/ Romain On 12/08/2009 11:40 AM, Martial Sankar wrote: Hi, I am looking for a R package which is capable to process and analysis pictures of tissues

[R] automated image processing

2009-12-08 Thread Martial Sankar
Hi, I am looking for a R package which is capable to process and analysis pictures of tissues (stained) in an automatic way. I had a look on biops and EBImage (Bioconductor) but they are not automatic... Did you already use/know a such package ? Thanks, - Martial