Re: [R] Stepwise rQTL-unknown warning message and odd QTL curve

2015-05-23 Thread John Kane
> To: lig...@statistik.tu-dortmund.de > Subject: Re: [R] Stepwise rQTL-unknown warning message and odd QTL curve > > Sorry, I'll try to provide more detail about what I have done so far with > code and any relevant output results. > > >library(qtl) > >sawfly.cross &

Re: [R] Stepwise rQTL-unknown warning message and odd QTL curve

2015-05-23 Thread Claire O'Quin
ne > Kingston ON Canada > > > > -Original Message- > > From: lig...@statistik.tu-dortmund.de > > Sent: Sat, 23 May 2015 09:36:15 +0200 > > To: claire.oq...@uky.edu, r-help@r-project.org > > Subject: Re: [R] Stepwise rQTL-unknown warning message and odd QTL curve >

Re: [R] Stepwise rQTL-unknown warning message and odd QTL curve

2015-05-23 Thread Claire O'Quin
Sorry, I'll try to provide more detail about what I have done so far with code and any relevant output results. >library(qtl) >sawfly.cross <- read.cross(format="csv", file="~/Desktop/Sawfly_data/QTL/Sawfly_QTL.csv", na.strings="NA", genotypes=c("A", "B"), alleles=c("A", "B"), estimate.map=F) --Re

Re: [R] Stepwise rQTL-unknown warning message and odd QTL curve

2015-05-23 Thread John Kane
o: claire.oq...@uky.edu, r-help@r-project.org > Subject: Re: [R] Stepwise rQTL-unknown warning message and odd QTL curve > > > > On 23.05.2015 01:07, Claire O'Quin wrote: >> Hi There, >> >> I am running a stepwise QTL for a backcross and got the following &g

Re: [R] Stepwise rQTL-unknown warning message and odd QTL curve

2015-05-23 Thread Uwe Ligges
On 23.05.2015 01:07, Claire O'Quin wrote: Hi There, I am running a stepwise QTL for a backcross and got the following warning message: Warning message: In lastout[[i]] - (max(lastout[[i]]) - dropresult[rn == qn[i], 3]) : longer object length is not a multiple of shorter object length So