Thank you for that information. I have found an rQTL help group and will try to see if folks over there can help. I apologize for not doing a very good job of communicating my issues over here. I will try my best to produce a reproducible example and post it here if I don't make any progress on resolving my issues. Thank you everyone for your time.
On Sat, May 23, 2015 at 10:16 AM, John Kane <jrkrid...@inbox.com> wrote: > > > http://stackoverflow.com/questions/5963269/how-to-make-a-great-r-reproducible-example > and http://adv-r.had.co.nz/Reproducibility.html > > John Kane > Kingston ON Canada > > > > -----Original Message----- > > From: lig...@statistik.tu-dortmund.de > > Sent: Sat, 23 May 2015 09:36:15 +0200 > > To: claire.oq...@uky.edu, r-help@r-project.org > > Subject: Re: [R] Stepwise rQTL-unknown warning message and odd QTL curve > > > > > > > > On 23.05.2015 01:07, Claire O'Quin wrote: > >> Hi There, > >> > >> I am running a stepwise QTL for a backcross and got the following > >> warning > >> message: > >> > >> Warning message: > >> In lastout[[i]] - (max(lastout[[i]]) - dropresult[rn == qn[i], 3]) : > >> longer object length is not a multiple of shorter object length > > > > So dimensions of the arguments may not match? > >> > >> I can not discern what this means. When I created my plot, the QTL curve > >> on > >> chromosome 3 is very odd (tried attaching it), so I suspect that the > >> warning is connected to that odd curve plot. > >> > >> I tried running the fitqtl just to see what would happen and got an > >> error > >> (Error in solve.default(t(Z) %*% Z, t(Z) %*% X) : system is > >> computationally > >> singular: reciprocal condition number = 1.49755e-24). > >> > >> Any thoughts about what is going on? > > > > No, without knoing what the arguments and the actual code was. > > > > Best, > > Uwe Ligges > > > >> > >> Thank you, > >> Claire > >> > >> > >> > >> ----------------------------------- > >> Claire O'Quin, PhD > >> Postdoctoral Research Scholar > >> University of Kentucky > >> http://www.linnenlab.com/home.html > >> > >> > >> > >> ______________________________________________ > >> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > >> https://stat.ethz.ch/mailman/listinfo/r-help > >> PLEASE do read the posting guide > >> http://www.R-project.org/posting-guide.html > >> and provide commented, minimal, self-contained, reproducible code. > >> > > > > ______________________________________________ > > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > > https://stat.ethz.ch/mailman/listinfo/r-help > > PLEASE do read the posting guide > > http://www.R-project.org/posting-guide.html > > and provide commented, minimal, self-contained, reproducible code. > > ____________________________________________________________ > FREE 3D EARTH SCREENSAVER - Watch the Earth right on your desktop! > Check it out at http://www.inbox.com/earth > > > -- ----------------------------------- Claire O'Quin, PhD Postdoctoral Research Scholar University of Kentucky http://www.linnenlab.com/home.html [[alternative HTML version deleted]] ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
