Re: [R] Rooting trees using ape

2007-10-10 Thread Simon Blomberg
Please supply enough information to allow us to reproduce the error. Also, nirK.tree is a different object to nirk.tree, which might be confusing things. Simon. On Wed, 2007-10-10 at 15:07 +0200, Chris Jones wrote: > Hi all, > > I seem to be having a difficult time using the 'ape' package in R

Re: [R] Rooting trees using ape

2007-10-10 Thread Ben Bolker
Chris Jones-35 wrote: > > Hi all, > > I seem to be having a difficult time using the 'ape' package in R > when it comes to rooting trees. Here's a short screenshot: > > [snip] > > Can you post your dataset, or a subset of it that replicates the problem, somewhere? (On the list if sho

[R] Rooting trees using ape

2007-10-10 Thread Chris Jones
Hi all, I seem to be having a difficult time using the 'ape' package in R when it comes to rooting trees. Here's a short screenshot: > nirK.tree Phylogenetic tree with 23 tips and 21 internal nodes. Tip labels: Burkholder, Burkholde3, Burkholde1, Burkholde4, Burkholde5, Ralstonia2