Please supply enough information to allow us to reproduce the error. Also, nirK.tree is a different object to nirk.tree, which might be confusing things.
Simon. On Wed, 2007-10-10 at 15:07 +0200, Chris Jones wrote: > Hi all, > > I seem to be having a difficult time using the 'ape' package in R > when it comes to rooting trees. Here's a short screenshot: > > > nirK.tree > > Phylogenetic tree with 23 tips and 21 internal nodes. > > Tip labels: > Burkholder, Burkholde3, Burkholde1, Burkholde4, Burkholde5, > Ralstonia2, ... > Node labels: > , 100, 100, 100, 70, 91,... > > Unooted; includes branch lengths. > > test<-root(nirk.tree, 4) > Error in root(nirk.tree, 4) : subscript out of bounds > > test<-root(nirk.tree, "Burkholde4") > Error in root(nirk.tree, "Burkholde4") : subscript out of bounds > > > > I tried with the example tree provided in the package, and that > seemed to work ok. Any suggestions? > > Many thanks, > Chris > > ______________________________________________ > R-help@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. -- Simon Blomberg, BSc (Hons), PhD, MAppStat. Lecturer and Consultant Statistician Faculty of Biological and Chemical Sciences The University of Queensland St. Lucia Queensland 4072 Australia Room 320 Goddard Building (8) T: +61 7 3365 2506 email: S.Blomberg1_at_uq.edu.au Policies: 1. I will NOT analyse your data for you. 2. Your deadline is your problem. The combination of some data and an aching desire for an answer does not ensure that a reasonable answer can be extracted from a given body of data. - John Tukey. ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
