Re: [R] R died on large data set

What is 'died'? What is the error message? On Sat, Feb 20, 2010 at 7:13 AM, Marcelo Laia wrote: > Hi, I am trying to run a script on R and it died before finish. > > I already read the list archives, and memory help pages > (http://tinyurl.com/yaxco6w), but I am unable to solve the issue. > > M

Re: [R] R died on large data set

Some suggestions: The line: pearson.dist <- as.dist(1-cor(t(todos.norm), method="pearson")) includes several data manipulations in "one go". Each manipulation creates at least one extra copy of your data in memory. When you do it this, you make it harder for the R garbage collector to clean o

[R] R died on large data set

Hi, I am trying to run a script on R and it died before finish. I already read the list archives, and memory help pages (http://tinyurl.com/yaxco6w), but I am unable to solve the issue. My Debian shows: marc...@laia:~$ ulimit unlimited marc...@laia:~$ On system monitor (gnome) I see that R reac