Hi, I am trying to run a script on R and it died before finish.
I already read the list archives, and memory help pages
(http://tinyurl.com/yaxco6w), but I am unable to solve the issue.
My Debian shows:
marc...@laia:~$ ulimit
unlimited
marc...@laia:~$
On system monitor (gnome) I see that R reaches 1.9 Gb, before die.
The R code is:
> ls() ## only todos.norm object are listed
[1] "todos.norm"
> dim(todos.norm)
[1] 9600 15
>
> library("cluster")
> pearson.dist <- as.dist(1-cor(t(todos.norm), method="pearson"))
Died
What I could do to solve my problem?
> sessionInfo() ## after restart R
R version 2.10.1 (2009-12-14)
i486-pc-linux-gnu
locale:
[1] LC_CTYPE=pt_BR.UTF-8 LC_NUMERIC=C
[3] LC_TIME=pt_BR.UTF-8 LC_COLLATE=pt_BR.UTF-8
[5] LC_MONETARY=C LC_MESSAGES=pt_BR.UTF-8
[7] LC_PAPER=pt_BR.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=pt_BR.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
>
My system:
Linux laia 2.6.32-trunk-686 #1 SMP Sun Jan 10 06:32:16 UTC 2010 i686 GNU/Linux
Than you very much!
--
Marcelo Luiz de Laia
Brazil
Linux user number 487797
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