Re: [R] R bioconductor agilent aCGH analysis

2012-07-27 Thread arun
HI, I think you will get better response if you post in bioconductor mailing list (http://www.bioconductor.org/help/mailing-list/). A.K. - Original Message - From: Preeti To: r-help@r-project.org Cc: Sent: Friday, July 27, 2012 6:05 PM Subject: [R] R bioconductor agilent aCGH

Re: [R] R bioconductor agilent aCGH analysis

2012-07-27 Thread David Winsemius
On Jul 27, 2012, at 3:05 PM, Preeti wrote: Hi, I would like to analyze some agilent aCGH copy number files. As a start, I would like to normalize this data. I don't know what is the standard way to do this. Which package is the standard one that people use for this purpose? The chips that

[R] R bioconductor agilent aCGH analysis

2012-07-27 Thread Preeti
Hi, I would like to analyze some agilent aCGH copy number files. As a start, I would like to normalize this data. I don't know what is the standard way to do this. Which package is the standard one that people use for this purpose? The chips that I am looking at are the agilent sure print 1M (G444