HI, I think you will get better response if you post in bioconductor mailing list (http://www.bioconductor.org/help/mailing-list/).
A.K. ----- Original Message ----- From: Preeti <pre...@sci.utah.edu> To: r-help@r-project.org Cc: Sent: Friday, July 27, 2012 6:05 PM Subject: [R] R bioconductor agilent aCGH analysis Hi, I would like to analyze some agilent aCGH copy number files. As a start, I would like to normalize this data. I don't know what is the standard way to do this. Which package is the standard one that people use for this purpose? The chips that I am looking at are the agilent sure print 1M (G4447a) array and a custom chip with similar format. My raw data is a text file with spot locations and intensities. It is a two color array. Thanks for your help! [[alternative HTML version deleted]] ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
