Maechler; r-help@r-project.org
Subject: Re: [R] Missing dependencies in pkg installs
Checked all the permissions, and it appears that file_test returns a FALSE and
system(ls -l) shows it is executable, so the problem seems to be in R and it's
relationship to RHEL. I tried installing R3.3.3 to
roject.org
Subject: RE: [R] Missing dependencies in pkg installs
I had the same thought in the shower this morning but I was disappointed to
find that SElinux was disabled on the system. My next step will be to install
a previous version of R on the system. My problem is that I am planning a
sh
h
Cc: Conklin, Mike (GfK); Martin Maechler; r-help@r-project.org
Subject: Re: [R] Missing dependencies in pkg installs
Duncan Murdoch writes:
> On 22/06/2017 5:02 PM, Conklin, Mike (GfK) wrote:
> > I am using debug on the .install_packages function...stepping through.
> > Once t
Duncan Murdoch writes:
> On 22/06/2017 5:02 PM, Conklin, Mike (GfK) wrote:
> > I am using debug on the .install_packages function...stepping through.
> > Once the temporary folder is created and the tar file expanded I run
> > file_test and get a FALSE back indicating that the configure file
out of R in the first session I confirm the same result - the
system shows the file as executable
--
W. Michael Conklin
EVP Marketing & Data Sciences
GfK
T +1 763 417 4545 | M +1 612 567 8287
-Original Message-
From: Duncan Murdoch [mailto:murdoch.dun...@gmail.com]
Sent: Thursday, June 22, 2
fK
T +1 763 417 4545 | M +1 612 567 8287
-Original Message-----
From: Duncan Murdoch [mailto:murdoch.dun...@gmail.com]
Sent: Thursday, June 22, 2017 3:06 PM
To: Conklin, Mike (GfK); Martin Maechler; David Winsemius
Cc: r-help@r-project.org
Subject: Re: [R] Missing dependencies in pkg insta
-Original Message-
From: Duncan Murdoch [mailto:murdoch.dun...@gmail.com]
Sent: Thursday, June 22, 2017 11:09 AM
To: Conklin, Mike (GfK); Martin Maechler; David Winsemius
Cc: r-help@r-project.org
Subject: Re: [R] Missing dependencies in pkg installs
On 22/06/2017 11:15 AM, Conklin, Mike (G
ckages() exit status 1
--
W. Michael Conklin
EVP Marketing & Data Sciences
GfK
T +1 763 417 4545 | M +1 612 567 8287
-Original Message-
From: Duncan Murdoch [mailto:murdoch.dun...@gmail.com]
Sent: Thursday, June 22, 2017 11:09 AM
To: Conklin, Mike (GfK); Martin Maechler; David W
_packages'
Updating HTML index of packages in '.Library'
Making 'packages.html' ... done
Warning message:
In install.packages("stringi") :
installation of package 'stringi' had non-zero exit status
--
W. Michael Conklin
EVP Marketing & Data Science
(GfK)
Sent: Thursday, June 22, 2017 10:15 AM
To: Duncan Murdoch; Martin Maechler; David Winsemius
Cc: r-help@r-project.org
Subject: Re: [R] Missing dependencies in pkg installs
Following Duncan's instructions I find that the system and R find that
configure IS executable but if trying to in
packages in '.Library'
Making 'packages.html' ... done
Warning message:
In install.packages("stringi") :
installation of package 'stringi' had non-zero exit status
--
W. Michael Conklin
EVP Marketing & Data Sciences
GfK
T +1 763 417 4545 | M +1 612 567
The "configure exists but is not executable" problem is somewhat common
on Windows, because there's usually no such thing as an executable bit
there. (Cygwin does something to fake one, but Windows generally
doesn't.) If you create a tarball there by default you get no
executable bits marked
> David Winsemius
> on Wed, 21 Jun 2017 18:04:13 -0700 writes:
>> On Jun 21, 2017, at 1:39 PM, Conklin, Mike (GfK)
wrote:
>>
>> I have a Ubuntu server with an R installation that has 384 packages
installed. We are trying to replicate the system on a Red Hat Enterprise
> On Jun 21, 2017, at 1:39 PM, Conklin, Mike (GfK) wrote:
>
> I have a Ubuntu server with an R installation that has 384 packages
> installed. We are trying to replicate the system on a Red Hat Enterprise
> server. I downloaded the list of packages from the Ubuntu machine and read it
> into
I have a Ubuntu server with an R installation that has 384 packages installed.
We are trying to replicate the system on a Red Hat Enterprise server. I
downloaded the list of packages from the Ubuntu machine and read it into an R
session on the new machine. Then I ran install.packages(listofpack
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