> On Jun 21, 2017, at 1:39 PM, Conklin, Mike (GfK) <mike.conk...@gfk.com> wrote: > > I have a Ubuntu server with an R installation that has 384 packages > installed. We are trying to replicate the system on a Red Hat Enterprise > server. I downloaded the list of packages from the Ubuntu machine and read it > into an R session on the new machine. Then I ran > install.packages(listofpackages). Now I have 352 packages on the new machine > but several very common packages (like much of the tidyverse, ggplot2, Hmisc) > failed to install because of missing dependencies (most of which are the > other packages that failed to install). > > R version 3.4.0 (2017-04-21) > Platform: x86_64-redhat-linux-gnu (64-bit)
I'd make sure you have reviewed this: https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Essential-programs-and-libraries Best; David. > Running under: Red Hat Enterprise Linux Server 7.2 (Maipo) > > Matrix products: default > BLAS/LAPACK: /usr/lib64/R/lib/libRblas.so > > locale: > [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C > [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 > [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 > [7] LC_PAPER=en_US.UTF-8 LC_NAME=C > [9] LC_ADDRESS=C LC_TELEPHONE=C > [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C > > attached base packages: > [1] stats graphics grDevices utils datasets methods base > > other attached packages: > [1] dplyr_0.7.0 shiny_1.0.3 > > loaded via a namespace (and not attached): > [1] compiler_3.4.0 magrittr_1.5 assertthat_0.2.0 R6_2.2.2 > [5] htmltools_0.3.6 tools_3.4.0 glue_1.1.1 tibble_1.3.3 > [9] Rcpp_0.12.11 digest_0.6.12 xtable_1.8-2 httpuv_1.3.3 > [13] mime_0.5 rlang_0.1.1 >> > > > If I try and install Hmisc for example I get the following errors: > for the first error ERROR: 'configure' exists but is not executable -- see > the 'R Installation and dministration Manual' I did not find the R > Installation and Administration Manual helpful. > > >> install.packages("Hmisc") > Installing package into '/usr/lib64/R/library' > (as 'lib' is unspecified) > also installing the dependencies 'stringi', 'evaluate', 'reshape2', > 'stringr', knitr', 'ggplot2', 'htmlTable', 'viridis' > > trying URL 'https://cloud.r-project.org/src/contrib/stringi_1.1.5.tar.gz' > Content type 'application/x-gzip' length 3645872 bytes (3.5 MB) > ================================================== > downloaded 3.5 MB > > trying URL 'https://cloud.r-project.org/src/contrib/evaluate_0.10.tar.gz' > Content type 'application/x-gzip' length 21914 bytes (21 KB) > ================================================== > downloaded 21 KB > > trying URL 'https://cloud.r-project.org/src/contrib/reshape2_1.4.2.tar.gz' > Content type 'application/x-gzip' length 34688 bytes (33 KB) > ================================================== > downloaded 33 KB > > trying URL 'https://cloud.r-project.org/src/contrib/stringr_1.2.0.tar.gz' > Content type 'application/x-gzip' length 94095 bytes (91 KB) > ================================================== > downloaded 91 KB > > trying URL 'https://cloud.r-project.org/src/contrib/knitr_1.16.tar.gz' > Content type 'application/x-gzip' length 1031259 bytes (1007 KB) > ================================================== > downloaded 1007 KB > > trying URL 'https://cloud.r-project.org/src/contrib/ggplot2_2.2.1.tar.gz' > Content type 'application/x-gzip' length 2213308 bytes (2.1 MB) > ================================================== > downloaded 2.1 MB > > trying URL 'https://cloud.r-project.org/src/contrib/htmlTable_1.9.tar.gz' > Content type 'application/x-gzip' length 152095 bytes (148 KB) > ================================================== > downloaded 148 KB > > trying URL 'https://cloud.r-project.org/src/contrib/viridis_0.4.0.tar.gz' > Content type 'application/x-gzip' length 1787731 bytes (1.7 MB) > ================================================== > downloaded 1.7 MB > > trying URL 'https://cloud.r-project.org/src/contrib/Hmisc_4.0-3.tar.gz' > Content type 'application/x-gzip' length 702759 bytes (686 KB) > ================================================== > downloaded 686 KB > > * installing *source* package 'stringi' ... > ** package 'stringi' successfully unpacked and MD5 sums checked > ERROR: 'configure' exists but is not executable -- see the 'R Installation > and dministration Manual' > * removing '/usr/lib64/R/library/stringi' > ERROR: dependency 'stringi' is not available for package 'stringr' > * removing '/usr/lib64/R/library/stringr' > ERROR: dependency 'stringr' is not available for package 'evaluate' > * removing '/usr/lib64/R/library/evaluate' > ERROR: dependency 'stringr' is not available for package 'reshape2' > * removing '/usr/lib64/R/library/reshape2' > ERROR: dependencies 'evaluate', 'stringr' are not available for package > 'knitr' > * removing '/usr/lib64/R/library/knitr' > ERROR: dependency 'reshape2' is not available for package 'ggplot2' > * removing '/usr/lib64/R/library/ggplot2' > ERROR: dependencies 'stringr', 'knitr' are not available for package > 'htmlTable > * removing '/usr/lib64/R/library/htmlTable' > ERROR: dependency 'ggplot2' is not available for package 'viridis' > * removing '/usr/lib64/R/library/viridis' > ERROR: dependencies 'ggplot2', 'htmlTable', 'viridis' are not available for > pacage 'Hmisc' > * removing '/usr/lib64/R/library/Hmisc' > > > Any help is appreciated. > -- > W. Michael Conklin > Executive Vice President > Marketing & Data Sciences - North America > GfK | 8401 Golden Valley Road | Minneapolis | MN | 55427 > mike.conk...@gfk.com<mailto:mike.conk...@gfk.com> > T +1 763 417 4545 | M +1 612 567 8287 > www.gfk.com<http://www.gfk.com/> > > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. David Winsemius Alameda, CA, USA ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
