Re: [R] Help installing netReg

2019-04-22 Thread Spencer Brackett
I updated my rStudio to the newest version. "netReg" is apparently unavailable here but I will try to use another function to generate the regression models I am looking for. Thanks, Spencer On Mon, Apr 22, 2019 at 6:35 AM Jeff Newmiller wrote: > Spoken like someone who hasn't encountered the

Re: [R] Help installing netReg

2019-04-22 Thread Jeff Newmiller
Spoken like someone who hasn't encountered the nightmare that ensues when some schmuck fails to limit their actions to only updating the system R library while following it. It is straightforward and painless to simply update the user library instead, and so much the better if they don't have Ad

Re: [R] Help installing netReg

2019-04-21 Thread Caitlin Gibbons
Hi Spencer. On a Windows machine, the message “Installation path not writeable” can be solved by starting RStudio as an administrator. Right click the RStudio icon and select “Run as Administrator”. This should solve that problem. Hope this helps. ~Caitlin Sent from my iPhone > On Apr 21,

Re: [R] Help installing netReg

2019-04-21 Thread Jeff Newmiller
I don't know anything about the Bioconductor installation, but it is normal practice on Windows to install updates to packages distributed with R (such as those below) by "superceding" them in your user library. This happens automatically if you don't specify the destination library to install t

Re: [R] Help installing netReg

2019-04-21 Thread Boris Steipe
"installation path not writeable" tells you that there is a permissions problem with your setup. Sounds like a pretty standard problem. Someone who works with Windows will know the standard solution. Cheers, B. > On 2019-04-21, at 23:49, Spencer Brackett > wrote: > > Boris, > ' > My apolo

Re: [R] Help installing netReg

2019-04-21 Thread Spencer Brackett
Boris, ' My apologies. Thanks for the tip! I tried the command you suggested in your response and got the following... > BiocManager::install("netReg") Bioconductor version 3.8 (BiocManager 1.30.4), R 3.5.1 (2018-07-02) Installing package(s) 'BiocVersion', 'netReg' trying URL ' https://bioconducto

Re: [R] Help installing netReg

2019-04-21 Thread Boris Steipe
This is unrelated to the question on the subject line, we call this "thread hijacking" and that's one of the Things Not To Do. Post a new question. I just wanted to give you the proper incantation for Bioconductor packages. As you already know, don't use bioclite(), which needed to be sourced fr

Re: [R] Help installing netReg

2019-04-21 Thread Spencer Brackett
R users, I am trying to download R Studio onto my Chrombook for convenience, but exited out of the Linux terminal that had opened upon my turning on of Linux(Beta) through my settings. Because of this I am unable to prompt the same type of Linex terminal and can only enable a new one via ctrl al

Re: [R] Help installing netReg

2019-04-21 Thread Spencer Brackett
Mr. Gunter, Yes I have reached out to the bioconductor list but was informed that my inquiry concerning this package was not appropriate for the mailing list. However, I have since tried re implementing the code which I sent and my R Studio says that netReg has successfully been unpacked, so for n

Re: [R] Help installing netReg

2019-04-21 Thread Bert Gunter
netReg is not "the package that generates regression models in R." Tons of packages generate regression models in R, including lm(), which is in the stats package that is part of R's standard distro. So what exactly is it that you want to do that you think requires netReg? And if netReg is require

Re: [R] Help installing netReg

2019-04-21 Thread Spencer Brackett
Good evening, I am having problems with downloading the package used to generate regression models on R. The following is the error message I received. I tried installing BiocManager instead as suggested, but this too did not work. Any ideas? The following is the full summary of what I’ve tried

Re: [R] Help installing netReg

2019-04-15 Thread Christopher W. Ryan
Sorry, was typing on my phone. Not "compy." "Computer." I was asking whether you were working on your own, standalone, computer, or whether perhaps this was an institutional, networked, machine, on which you don't have write permissions that you need. --Chris Ryan Spencer Brackett wrote: > Mr

Re: [R] Help installing netReg

2019-04-14 Thread Spencer Brackett
My apologies... here is the full code in summary install.packages("ggplot2") install.packages("ggplot2") source("https://bioconductor.org/biocLite.R";) ?BiocUpgrade source("https://bioconductor.org/biocLite.R";)biocLite("BiocUpgrade") source("https://bioconductor.org/biocLite.R";) biocLite("BiocUp

Re: [R] Help installing netReg

2019-04-14 Thread Spencer Brackett
Mr. Ryan, If you are referring to the CRAN mirror, my default is US (NY) [https] On Sun, Apr 14, 2019 at 7:23 PM Chris Ryan wrote: > Spencer-- > > What is your compy set-up? Standalone, networked? Where is R installed? Do > you have write privileges to that location? > > Chris Ryan > -- > Sent

Re: [R] Help installing netReg

2019-04-14 Thread Chris Ryan
Spencer-- What is your compy set-up? Standalone, networked? Where is R installed? Do you have write privileges to that location? Chris Ryan -- Sent from my Android device with K-9 Mail. Please excuse my brevity. On April 14, 2019 6:18:37 PM EDT, Spencer Brackett wrote: >Good evening, > > I a

Re: [R] Help installing netReg

2019-04-14 Thread David Winsemius
On 4/14/19 3:20 PM, Spencer Brackett wrote: Good evening, I am having problems with downloading the package used to generate regression models on R. The following is the error message I received. I tried installing BiocManager instead as suggested, but this too did not work. Any ideas? The

[R] Help installing netReg

2019-04-14 Thread Spencer Brackett
Good evening, I am having problems with downloading the package used to generate regression models on R. The following is the error message I received. I tried installing BiocManager instead as suggested, but this too did not work. Any ideas? The downloaded binary packages are in C:\Users\Spence

[R] Help installing netReg

2019-04-14 Thread Spencer Brackett
Good evening, I am having problems with downloading the package used to generate regression models on R. The following is the error message I received. I tried installing BiocManager instead as suggested, but this too did not work. Any ideas? The downloaded binary packages are in C:\Users\Spence