My apologies... here is the full code in summary
install.packages("ggplot2")
install.packages("ggplot2")
source("https://bioconductor.org/biocLite.R";)
?BiocUpgrade
source("https://bioconductor.org/biocLite.R";)biocLite("BiocUpgrade")
source("https://bioconductor.org/biocLite.R";)
biocLite("BiocUpgrade")
source("https://bioconductor.org/bioLite.R";)
biocLite("netReg")
help("Deprecated")
'BiocManager::install'
biocLite("netReg")
help("oldName-deprecated")
‘??oldName-deprecated’
.Deprecated(new, package=NULL, msg,
old = as.character(sys.call(sys.parent()))[1L])
Best,
Spencer
On Sun, Apr 14, 2019 at 7:20 PM David Winsemius <dwinsem...@comcast.net>
wrote:
>
> On 4/14/19 3:20 PM, Spencer Brackett wrote:
> > Good evening,
> >
> > I am having problems with downloading the package used to generate
> > regression models on R. The following is the error message I received. I
> > tried installing BiocManager instead as suggested, but this too did not
> > work. Any ideas?
> >
> > The downloaded binary packages are in
> > C:\Users\Spencer\AppData\Local\Temp\Rtmp8YKVqx\downloaded_packages
> > installation path not writeable, unable to update packages: class,
> cluster,
> > codetools, foreign,
> > lattice, MASS, Matrix, mgcv, nlme, rpart, survival
> > Warning message:
> > 'biocLite' is deprecated.
> > Use 'BiocManager::install' instead.
> > See help("Deprecated")
>
>
> Since you did not include the code that provoked this message we can
> only guess that you did in fact use `bioLite`. We also cannot tell what
> you mean by "problems with downloading the package used to generate
> regression models on R". The typical first step is to use the glm or lm
> function for this task and those are both in the stats package which is
> installed with the base version of R and is loaded by default when R is
> started up.
>
> "
>
> Have you tried following the suggestion at the end of the message?
>
>
> And do read the Posting Guide and include "commented, minimal,
> self-contained, reproducible code."
>
>
> --
>
> David.
>
> >
> > Best,
> >
> > Spencer
> >
> > [[alternative HTML version deleted]]
> >
> > ______________________________________________
> > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
> > https://stat.ethz.ch/mailman/listinfo/r-help
> > PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> > and provide commented, minimal, self-contained, reproducible code.
>
[[alternative HTML version deleted]]
______________________________________________
R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
