Re: [R] Differential Gene Expression in R

2021-08-22 Thread Anas Jamshed
EdgeR in Galaxy requires factor, group, and contrast so what should I do? On Mon, Aug 23, 2021 at 12:09 AM Matthew McCormack < mccorm...@molbio.mgh.harvard.edu> wrote: >You can look into the edgeR vignette. To get the vignette type > 'vignette("edgeR")' in the R command line. Also, just type

Re: [R] Differential Gene Expression in R

2021-08-22 Thread Matthew McCormack
  You can look into the edgeR vignette. To get the vignette type 'vignette("edgeR")' in the R command line. Also, just type 'vignette()' and R will list all the vignette's for your loaded packages.  Vignettes often have a model analysis that you can follow along and try to adjust to your specif

[R] Differential Gene Expression in R

2021-08-22 Thread Anas Jamshed
I have downloaded data from: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE162562&fbclid=IwAR0iZQhttG8HzGhFIIMWbFgNszQrVDgiyVChYzQ_ypCx_d-1pn_tm7STjGs and now I want to compare: healthy vs Mild healthy vs Highly exposed seronegative (ishgl) Healthy vs Asymptomatic covid19 patient healthy