I have downloaded data from:
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE162562&fbclid=IwAR0iZQhttG8HzGhFIIMWbFgNszQrVDgiyVChYzQ_ypCx_d-1pn_tm7STjGs
and now I want to compare:
healthy vs Mild healthy vs Highly exposed seronegative (ishgl) Healthy vs
Asymptomatic covid19 patient healthy vs Highly exposed seronegative (non
ishgl) from this data.
I started like :
library(edgeR)
library(limma)
library(GEOquery)
library(Biobase)
Sys.setenv("VROOM_CONNECTION_SIZE" = 131072 * 2)
setwd("D:\\")
untar("GSE162562_RAW.tar")
filelist = list.files(pattern = ".*.txt.gz")
But after getting text files I don't know how to proceed further. I want to
find degs from these files *Plz help me *
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