Yes. https://lmgtfy.com/?q=R+ancova
--
Sent from my phone. Please excuse my brevity.
On November 21, 2016 9:09:58 PM PST, li li wrote:
>Hi all,
>Is there an R function which can handles dependent response in Analysis
>of covariance model. The dependence structure is known and is
Hi all,
Is there an R function which can handles dependent response in Analysis
of covariance model. The dependence structure is known and is there to
account for it in ANCOVA analysis in R?
Thanks.
Hanna
[[alternative HTML version deleted]]
_
Hi,
I have two within-subject factors A and B, and covariate CV, and wanna run
an ANCOVA on the dependent variable DV.
my code is:
ancova=aov(DV~factor(A)*factor(B)+CV+Error(factor(subject)/(factor(A)*factor(B))),data=data)
Is that correct?
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View this message in context:
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Hi,
I have 2 factors A and B, and the covariate CV, and wanna run an
within-subject ANCOVA on the dependent variable DV.
Previously my ANOVA was
anova=aov(DV~factor(A)*factor(B)+Error(factor(subject)/(factor(A)*factor(B))),data=data)
how do I modify this code to included a covariate CV to run
Hi,
I have two within-subject factors A and B, and covariate CV, and wanna run
an ANCOVA on the dependent variable DV.
my code is:
ancova=aov(DV~factor(A)*factor(B)+CV+Error(factor(subject)/(factor(A)*factor(B))),data=data)
Is that correct?
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Dear list members:
I am trying to calculate power for an ANCOVA analysis.
I have found different solutions such as power.t.test and power.anova.test
but they seem to refer to the ANOVA part of the ANCOVA.
My model is of the form:
lm (y ~ factor + x1 + x2 + x2*myfactor)
where myfactor is a fact
On Feb 12, 2012, at 7:39 AM, Evagelopoulos Thanasis wrote:
Could you please help me on the following ANCOVA issue?
This is a part of my dataset:
sampling dist h
1wi 200 0.8687212
2wi 200 0.8812909
3wi 200 0.8267464
4wi0 0.8554508
5wi0
I am at my machine now. The subset of the data you sent has only two
groups and doesn't
have a significant interaction. Therefore I can't talk about specifics for
your example.
The glht test you did compared the means of the sampling factor ignoring
the dist covariate. Your description
said you
ancova in HH is a wrapper for aov
that displays a set of lattice plots.
the problem you are seeing is probably that glht ignores covariates (with an
appropriate message) unless you specify an optional argument.
I will reply in more detail when i am at
my computer.
in the meantime, look at ?glht
Inline below
On Feb 12, 2012, at 13:39 , Evagelopoulos Thanasis wrote:
[...]
>
> Because there exist significantly different regression slopes, I did a post
> hoc test with glht() to find out between which samplings:
>
>> summary(glht(mod, linfct=mcp(sampling="Tukey")))
>
I believe this compa
Could you please help me on the following ANCOVA issue?
This is a part of my dataset:
sampling dist h
1wi 200 0.8687212
2wi 200 0.8812909
3wi 200 0.8267464
4wi0 0.8554508
5wi0 0.9506721
6wi0 0.8112781
7wi 400 0.868721
I am trying to do and ANCOVA with ten sites that I want to compare condition
at, with Length as a covariate.
Most examples I have found only deal with two levels and I am unsure if the
same code applies for more than two levels. Here is what I have, and I just
wanted to double check that I am on t
PM
To: Yusuke Fukuda; 'Peter Ehlers'
Cc: r-help@r-project.org
Subject: RE: [R] ANCOVA for linear regressions without intercept
Hi Yusuke,
Does the following get what you are after?
### Make some test data.
> set.seed(123)
> edf <- data.frame(sex = c(rep("Male"
rc.ca]
Sent: Tuesday, 5 April 2011 12:08 PM
To: Yusuke Fukuda; 'Peter Ehlers'
Cc: r-help@r-project.org
Subject: RE: [R] ANCOVA for linear regressions without intercept
Hi Yusuke,
Does the following get what you are after?
### Make some test data.
> set.seed(123)
> edf <- data
ot;blue", lty = 2)
> abline(a = 0, b = coef(lmr1f)[2], col = "orange", lty = 2, lwd = 4)
>
The other two tests can be set up and run similarly. Don't
forget to adjust for multiple comparisons...
HTH
Steve
Steven McKinney, Ph.D.
Statistician
Molecular Oncology an
ssage-
From: Peter Ehlers [mailto:ehl...@ucalgary.ca]
Sent: Saturday, 2 April 2011 1:35 AM
To: Yusuke Fukuda
Cc: 'Bert Gunter'; r-help@r-project.org
Subject: Re: [R] ANCOVA for linear regressions without intercept
See inline.
On 2011-03-31 22:22, Yusuke Fukuda wrote:
> Thanks Ber
usuke Fukuda
Cc: r-help@r-project.org
Subject: Re: [R] ANCOVA for linear regressions without intercept
If you haven't already received an answer, a careful reading of
?formula
will provide it.
-- Bert
On Wed, Mar 30, 2011 at 11:42 PM, Yusuke Fukuda wrote:
Hello R experts
I have two linear regre
fference is significant or not.
Thanks for your help.
From: Bert Gunter [mailto:gunter.ber...@gene.com]
Sent: Friday, 1 April 2011 12:56 AM
To: Yusuke Fukuda
Cc: r-help@r-project.org
Subject: Re: [R] ANCOVA for linear regressions without intercept
If y
If you haven't already received an answer, a careful reading of
?formula
will provide it.
-- Bert
On Wed, Mar 30, 2011 at 11:42 PM, Yusuke Fukuda wrote:
>
> Hello R experts
>
> I have two linear regressions for sexes (Male, Female, Unknown). All have a
> good correlation between body length (r
Hello R experts
I have two linear regressions for sexes (Male, Female, Unknown). All have a
good correlation between body length (response variable) and head length
(explanatory variable). I know it is not recommended, but for a good practical
reason (the purpose of study is to find a single c
Francesco:
1. You need to seek local statistical help.
2. The answer to your question is: it depends in how you define
"influence significantly." If you define it as "the interaction term
is significant" then, by definition the answer is yes. If you want to
understand what is going on and make me
Dear [R] Users,
I have implemented a linear model with this syntax:
model<- lm (var_dependent ~ var_indipendent + factor + var_indipendent :
factor, dataframe)
anova (model)
Response: var_dependent
Df Sum Sq Mean Sq F valuePr(>F)
var_indip
I am trying to run an ancova and am having trouble setting it up properly.
I have nearly 10,000 measurements of fish length, girth and stage of sexual
development. I am suspicious that the stage of development is affecting the
length (as they get full of eggs they get more round and are more diffic
I am trying to run an ancova and am having trouble setting it up properly.
I have nearly 10,000 measurements of fish length, girth and stage of sexual
development. I am suspicious that the stage of development is affecting the
length (as they get full of eggs they get more round and are more diffic
Thankyou all for the replies!
I am sure you can guess the next question that is coming...
I expanded the code (and the data set) to now include a third type "C",
which I made VERY similar to A:
anco <- read.table(tmp, header=TRUE)
close.connection(tmp)
wind <- data.frame(day=rep(anco$day, 3)
I recommend the ancova function in the HH package.
install.packages("HH")
library(HH)
example(ancova)
?ancova
For your example,
tmp <- textConnection(
"day A B
0 10.010.0
7 9.0 9.1
14 8.0 8.2
21 7.0 7.3
28 6.0 6.4
35 5.0 5.5
42
Hello,
I am VERY new to R, just picking it up infact. I have got my head around the
basics of ANOVA with post hoc tests but I am struggling with regression,
especially with ANCOVAs.
I have two sets of data, one of type A, one of type B. Both have been placed
in a wind tunnel and sampled every w
can anyone help me how to do a complete analysis of covariance in RBD?pls
help me...
--
View this message in context: http://n4.nabble.com/ancova-tp2014984p2014984.html
Sent from the R help mailing list archive at Nabble.com.
__
R-help@r-project.org m
7;, 'run 2'))
# plot:
library(lattice)
xyplot(y ~ x, data=d, groups=id, type=c('p','r'))
# ANCOVA
summary(l <- lm(y ~ x * id, data=d))
# plot confidence intervals
dotplot(confint(l), col=1, xlab='95% Conf. Int.')
Is there any way to tell if these two pop
Could someone or Richard explain to me what he meant by
"This also shows a singular Error(). We look at the data and see that
plot is identical to the three-way veget:fruit:block interaction."
It seems to me that I just needed to recoded the plots, in order to get rid
of the Error message. If t
When we ran a regular ANOVA we showed that both mice and raccoons respond
positively to cover. So we decided to use raccoons as a co-variate because
those are mouse predators and their presence per se could explain part of
the variation on mice activity. That is the reason why I'm running this
AN
Ok, now we can talk.
1. covariates: coon
Your model specification put coon sequentially last, effectively testing
the hypothesis that the slope associated with coon, after
adjusting for all the factors, is zero.
My model place coon sequentially first, effectively testing the
hypotheses that the
What does the command
c:\progra~1\R\R-2.9.1\bin\Rgui --vanilla
do?
At first I thought that I could run it from R. But then it did not work.
I'm using a mac, and I don't know how access MSDOS in a mac. I actually
installed R on the pc and tried to run the command from MSDOS and it also
didn't wor
Your model formula cannot be correct.
The phrase
Error(block/plot, data = track)
is wrong.
It has to be something like this
Error(block/plot), data = track
The Error function requires a well-defined formula.
The "," character cannot be inside the Error function.
You misunderstood my use of
I can actually run the code from my post.
I used the nabble for my list server
http://www.nabble.com/ANCOVA-with-defined-error-terms-td25055311.html#a25100032
I don't know which server you use, but that one is not truncated, I can copy
the code just fine and run it.
Anyway, here it is again
summ
Your email program truncated the model. It would not run,
hence was not reproducible.
The last few characters of the first line are
+Error(block/plot,
which is syntactically impossible because there is no
closing parenthesis before the comma.
Try executing your email and see the difficulty.
Hi Richard, there are no empty cells.
I transform everything into factor, except the co-variate coon.
Here is the full analysis with dput of the data.
I'm afraid I have not enough DF for the thre-way interaction using your
model as well. 12 plots divided in 3 blocks, each plot assigned to 2 cros
The three-way interactions you mention are included in the model formula
I suggested. If they didn't appear in the expansion, it suggests
that you have some aliasing due to empty cells.
I can't do any more without your dataset.
You can post your dataset with random response values.
The exact dat
Thank you Richard, this works. But, the model you suggested me lacks some
between subjects interactions, namely:
veget:time:block
fruit:time:block.
According to Sokal and Rohlf I need to report those as well.
Also, any ideas why the sum of squares on my model are different from yours
summar
Yes, I meant summary(). anova() isn't defined for aovlist objects and
summary() is.
Warning message:
In aov(kotz.mice ~ kotz.coon + block * veget * fruit * time -
block:veget:fruit:time + :
Error() model is singular
You will need to investigate the singular Error() model. You might want
Thanks Richard,
I tried running the analysis the way you suggested but here is the error
that I get
> track.aov <- aov(mice ~ coon+block*veget*fruit*time -
> block:veget:fruit:time
+ + Error(block/plot), data = track)
Warning message:
In aov(kotz.mice ~ kotz.coon + block * veget
track.aov <- aov(mice ~ coon
+ block*veget*fruit*time - block:veget:fruit:time
+ Error(block/plot), data = track)
anova(track.aov)
I think this is what you are looking for. This model in words says,
What is the effect of the four-way crossing after adjusting fo
I am trying to run an ANCOVA with defined error terms. Thus I have to use
AOV and not lm.
my response variable is proportion of mice paw prints on track plates. These
plates were placed on plots that had vegetation and fruit manipulated to two
levels each (present or absent), and were sampled mo
Dear Patrick,
> -Original Message-
> From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org]
On
> Behalf Of Patrick B é dard
> Sent: January-30-09 6:31 PM
> To: r-help@r-project.org
> Subject: [R] Ancova
>
> Hello,
>
> I have the following
Hello,
I have the following ancova:
my_ancova = aov(x~a+b)
How do I obtain the means of b once the covariate a has been removed?
thanks
__
Patrick Bédard Ph.D.
Dept. of Neuroscience
Brown University
[[alternative HTML version deleted]]
__
TECTED]
> project.org] On Behalf Of Samuel Okoye
> Sent: Tuesday, December 09, 2008 2:03 AM
> To: [EMAIL PROTECTED]
> Subject: [R] ANCOVA
>
>
> Hello,
>
> Could you please help me in the following question:
> I have 16 persons 6 take 0.5 mg, 6 take 0.75 mg and 4 take placebo! Can
&
Hello,
Could you please help me in the following question:
I have 16 persons 6 take 0.5 mg, 6 take 0.75 mg and 4 take placebo! Can I use
the ANCOVA and t-test in this case? Is it possible in R?
Thank you in advance,
Samuel
[[alternative HTML version deleted]]
___
answer does not
ensure that a reasonable answer can be extracted from a given body of
data.
~ John Tukey
-Oorspronkelijk bericht-
Van: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED]
Namens lara harrup (IAH-P)
Verzonden: woensdag 3 september 2008 10:47
Aan: r-help@r-project.org
Onderwerp: [R
And perhaps I should also have added: fit your model without an intercept and
look at your coefficients. You should be able to work it out from there
quite easily. Anyway, you now have the main pieces.
Regards, Mark.
Mark Difford wrote:
>
> Hi Lara,
>
>>> And I cant for the life of me work ou
Hi Lara,
>> And I cant for the life of me work out why category one (semio1) is being
>> ignored, missing
>> etc.
Nothing is being ignored Lara --- but you are ignoring the fact that your
factors have been coded using the default contrasts in R, viz so-called
treatment or Dunnett contrasts. Tha
Hi
I am using R version 2.7.2. on a windows XP OS and have a question
concerning an analysis of covariance with count data I am trying to do,
I will give details of a scaled down version of the analysis (as I have
more covariates and need to take account of over-dispersion etc etc) but
as I am sur
On Sat, 16 Aug 2008, Brown, Heidi wrote:
Having spent the last few weeks trying to decipher R, I feel I may
finally be getting somewhere, but i'M still in need of some advice and
all my tutors seem to be on holiday!
Basically a bit of background, I have data collected on a population of
Liza
Having spent the last few weeks trying to decipher R, I feel I may finally be
getting somewhere, but i'M still in need of some advice and all my tutors seem
to be on holiday!
Basically a bit of background, I have data collected on a population of Lizards
which includes age,sex, and body condit
On 3/06/2008, at 2:56 AM, Daniel Brewer wrote:
I have some data with two categorises plus/minus (p53) and a
particular
time (Time) and the outcome is a continuous vairable (Result). I
set up
a maximum model.
ancova <- lm(Result~Time*p53)
summary(ancova)
..
Coefficients:
Esti
I have some data with two categorises plus/minus (p53) and a particular
time (Time) and the outcome is a continuous vairable (Result). I set up
a maximum model.
ancova <- lm(Result~Time*p53)
> summary(ancova)
..
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) 0.05919
On Mon, 2008-04-21 at 17:21 +0200, Birgit Lemcke wrote:
> Hello Gavin,
>
> thanks for you answer.
> If I use it without " with" I get back the same error.
> The "with" thing was only to try out for functions that do not
> contain a data-argument. I still try to learn and therefor I
> sometimes
Hello Gavin,
thanks for you answer.
If I use it without " with" I get back the same error.
The "with" thing was only to try out for functions that do not
contain a data-argument. I still try to learn and therefor I
sometimes just try.
It is understood that I am on the way to simplify the mode
On Mon, 2008-04-21 at 15:43 +0200, Birgit Lemcke wrote:
> Hello R users!
>
> I got again an error message.
Something here is causing compiled code to segfault ("crash"). I don't
know what the problem is here exactly --- I'll let those much more
acquainted with R look into that --- but you seem to
Hello R users!
I got again an error message.
I used this code:
with (FemMal85_Sex, {
ModelFemMal85<-
glm
(Sex~outLatTep_like_other*outLatTep_like_conduplicate*outLatTep_keeled_w
inged*spathellae_co
Hello John,
I am really sorry about that. I wanted to include the code but I
forgot and you are completely right, I forgot the family-argument.
Thanks for the help.
B.
Am 21.04.2008 um 14:50 schrieb John Fox:
> Dear Brigit,
>
> My guess is that you forgot to specify the argument family=binom
Dear Brigit,
My guess is that you forgot to specify the argument family=binomial in
the call to glm().
Had you included the commands that you used as well as the error that
was produced, it wouldn't be necessary to guess.
I hope this helps,
John
On Mon, 21 Apr 2008 14:23:13 +0200
Birgit Lemck
R version 2.6.2 PowerBook G4
Hello R User,
I try to perform an ANCOVA using the glm function.
I have a dataset with continuous and categorical data (explanatory
variables) and my response variable is also binary categorical.
Fehler: NA/NaN/Inf in externem Funktionsaufruf (arg 4)
Zusätzlich: Wa
On Nov 15, 2007 4:36 PM, Johan A. Stenberg <[EMAIL PROTECTED]> wrote:
> Dear all,
>
> I'm quite sure that this is a stupid question, but I'll ask anyway.
> I want to perform an ANCOVA with two continuous factors and three
> categorical factors.
>
> Plant population growth rate (GR) = dependent vari
Your model is fully saturated. It specifies terms that use
up all degrees of freedom. There are no degrees of freedom left
over for a Residual term and therefore there is no denominator for
the tests.
When you drop one term, then those degrees of freedom are left over,
that is they form the Res
On Thu, 2007-11-15 at 16:36 +0100, Johan A. Stenberg wrote:
> Dear all,
>
> I'm quite sure that this is a stupid question, but I'll ask anyway.
> I want to perform an ANCOVA with two continuous factors and three
> categorical factors.
>
> Plant population growth rate (GR) = dependent variable
>
Dear all,
I'm quite sure that this is a stupid question, but I'll ask anyway.
I want to perform an ANCOVA with two continuous factors and three
categorical factors.
Plant population growth rate (GR) = dependent variable
Seed reduction due to herbivory (SR) = continuous explanatory variable
Herbi
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