I had the same problem but it now works if you remove some of the #info lines
at the top of the file so that the number of lines is the same as the
example sequence.vcf file before the data starts
--
View this message in context:
http://r.789695.n4.nabble.com/SNPRelate-package-error-tp4656236p4
Hello,
Why do you think it is a package error?
The error message says that "the file [...] has different numbers of
columns". Please check that file first.
Regards,
Pascal
Le 22/01/2013 16:05, sun...@scib.ac.cn a écrit :
Dear,
I am using the R package SNPRelate but I found an error when
Dear,
I am using the R package SNPRelate but I found an error when I run the
following command. Do you know what might be the problem? Thanks in
advance.
> vcf.fn <- system.file("extdata","str.vcf",package="SNPRelate")
> snpgdsVCF2GDS(vcf.fn,"test.gds")
Start snpgdsVCF2GDS ...
Extract
Sweden
Tel: +46 (0)40 391237
e-mail: joao.fadi...@med.lu.se
-Original Message-
From: John Kane [mailto:jrkrid...@inbox.com]
Sent: den 12 september 2012 15:13
To: Joao Fadista; r-help@r-project.org
Subject: RE: [R] SNPRelate package error
Are you sure that you have write permission to the
Are you sure that you have write permission to the directory that R is trying
to write to?
John Kane
Kingston ON Canada
> -Original Message-
> From: joao.fadi...@med.lu.se
> Sent: Wed, 12 Sep 2012 12:37:42 +
> To: r-help@r-project.org
> Subject: [R] SNPRelat
Dear all,
I am using the R package SNPRelate but I found an error when I run the
following command. Do you know what might be the problem? Thanks in advance.
> vcf.fn <- system.file("extdata", "sequence.vcf", package="SNPRelate")
> snpgdsVCF2GDS(vcf.fn, "test.gds")
Start snpgdsVCF2GDS ...
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