Hello, Why do you think it is a package error?
The error message says that "the file [...] has different numbers of columns". Please check that file first.
Regards, Pascal Le 22/01/2013 16:05, [email protected] a écrit :
Dear, I am using the R package SNPRelate but I found an error when I run the following command. Do you know what might be the problem? Thanks in advance.vcf.fn <- system.file("extdata","str.vcf",package="SNPRelate") snpgdsVCF2GDS(vcf.fn,"test.gds")Start snpgdsVCF2GDS ... Extracting bi-allelic and polymorhpic SNPs. Scanning ... file: D:/Program Files/R/R-2.14.2/library/SNPRelate/extdata/str.vcf Error in scan.vcf.marker(fn, method) : The file (D:/Program Files/R/R-2.14.2/library/SNPRelate/extdata/str.vcf) has different numbers of columns. Best regrads -- Dr. Ye SUN Key Laboratory of Plant Resources Conservation and Sustainable Utilization South China Botanical Garden, Chinese Academy of Sciences Xingke Road 723,Tianhe District, Guangzhou 510650, PR China [[alternative HTML version deleted]] ______________________________________________ [email protected] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
______________________________________________ [email protected] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
