Re: [R] HISTOGRAM

2018-11-09 Thread Rick Bilonick
First, a histogram would not be appropriate (your data appear to be categorical - a histogram is for continuous numeric vales) - you would need a bar plot. You should make two vectors (one for the category names and the other for the frequencies) and use the barplot function. On Fri, Nov 9, 2018 a

Re: [R] Is there t.test with null hypothesis?

2016-09-08 Thread Rick Bilonick
You need to include the argument "mu=1" (without parentheses). For example: > t.test(group1,group2, mu=1) for a two-sample independent groups t-test. If you type: > ?t.test you can see the help information for the t.test function. RIck On 09/08/2016 08:06 AM, Matti Viljamaa wrote: I’m tryin

Re: [R] Logical operator in R

2016-01-22 Thread Rick Bilonick
On 01/22/2016 10:46 AM, li li wrote: Hi all, I encountered the following strange phenomenon. For some reason, the obs_p[1] and res1$st_p[89] have the same value but when I run "==", it returns FALSE. Can anyone help give some explanation on this? Thanks very much! Hanna obs_p[1] [1]

Re: [R] Lavaan

2015-06-24 Thread Rick Bilonick
Have you considered using the semPlot package? It works nicely with lavaan models (among other sem packages). There is also the DiagrammeR package. Rick On 06/23/2015 10:48 AM, DzR wrote: Dear Senior users of R/R Studio, I am very new to this environment hence am unable to plot the SEM model

Re: [R] chi-square test

2014-09-15 Thread Rick Bilonick
On 09/15/2014 10:57 AM, eliza botto wrote: Dear useRs of R, I have two datasets (TT and SS) and i wanted to to see if my data is uniformly distributed or not?I tested it through chi-square test and results are given at the end of it.Now apparently P-value has a significant importance but I cant

Re: [R] CFA with lavaan or with SEM

2013-02-01 Thread Rick Bilonick
Not sure if you are aware of the OpenMx SEM package (http://openmx.psyc.virginia.edu/). It's a very full-featured structural equation modeling package. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read th

Re: [R] FIML with missing data in sem package

2011-12-01 Thread Rick Bilonick
On 12/01/2011 07:18 AM, John Fox wrote: > To:r-help@r-project.org > Subject: [R] FIML with missing data in sem package > You should check out the OpenMx R package. Just search for OpenMx and SEM. You can download from the web site. It does FIML and is an excellent SEM package. Rick B . _

[R] Installing Rmpi on Centos 5.2

2009-03-26 Thread Rick Bilonick
I am trying to install the R package "Rmpi" which needs libmpi. I've installed openmpi and lam in Centos 5.2: [r...@rab45-1 /]# rpm -qv openmpi openmpi-1.2.5-5.el5 openmpi-1.2.5-5.el5 [r...@rab45-1 /]# rpm -qv lam lam-7.1.2-14.el5 lam-7.1.2-14.el5 I'm using this to install Rmpi: R CMD INSTALL /h

Re: [R] Power analysis for MANOVA?

2009-02-01 Thread Rick Bilonick
On Wed, 2009-01-28 at 21:21 +0100, Stephan Kolassa wrote: > Hi Adam, > > first: I really don't know much about MANOVA, so I sadly can't help you > without learning about it an Pillai's V... which I would be glad to do, > but I really don't have the time right now. Sorry! > > Second: you seem to

Re: [R] Ordinal Package Errors

2009-01-14 Thread Rick Bilonick
On Wed, 2009-01-14 at 16:38 +, Prof Brian Ripley wrote: > You need to ask the author (as the posting guide asked you to). > > I'm tempted to not help further given the (almost complete) lack of > cooperation of that author with R's recommendations, but note > 'ordinal..so' in your log and l

[R] Ordinal Package Errors

2009-01-14 Thread Rick Bilonick
I'm trying to install the ordinal package (http://popgen.unimaas.nl/~plindsey/rlibs.html). I downloaded ordinal03.tgz and untarred it. rmutil was previously installed (and appears to work ok.) Then I installed ordinal: [r...@localhost ~]# R CMD INSTALL /home/chippy/Download/ordinal * Installing t

[R] Errors running gam examples

2008-11-09 Thread Rick Bilonick
I'm running R 2.8.0 under Fedora 8 (32-bit). I installed the gam package. I can fit gam models, but I get error messages when I try to use step.gam and plot.gam, even for examples: > library(gam) > ?plot.gam > data(gam.data) > gam.object <- gam(y ~ s(x,6) + z,data=gam.data) > plot(gam.object,se=TR

[R] Getting R and x11 to work

2008-06-05 Thread Rick Bilonick
I'm using Suse Linux Enterprise Desktop 10.2 (SP2) on an HP 2133 (x86) mini-notebook. (There apparently are a LOT of bugs in 10.1!) I downloaded R-base from the openSuse 10.2 repository and was (finally) able to install it (after installing blas and gcc-fortran). I can start an R session and do com

Re: [R] Using lme (nlme) to find the conditional variance of therandom effects

2007-11-12 Thread Rick Bilonick
On Tue, 2007-11-13 at 01:03 -0500, Rick Bilonick wrote: > > Is there some way to get ranef with postVar=TRUE to show what the > variances are, or what the lower and upper bounds are? qqmath makes nice > plots but I need to obtain the numerical values. > > Rick B. > I fou

Re: [R] Using lme (nlme) to find the conditional variance of therandom effects

2007-11-12 Thread Rick Bilonick
ilto:[EMAIL PROTECTED] On Behalf Of Rick Bilonick > > Sent: Monday, November 12, 2007 4:40 PM > > To: R Help > > Subject: [R] Using lme (nlme) to find the conditional > > variance of therandom effects > > > > Using lmer in the lme4 package, you can compute t

[R] Using lme (nlme) to find the conditional variance of the random effects

2007-11-12 Thread Rick Bilonick
Using lmer in the lme4 package, you can compute the conditional variance-covariance matrix of the random effects using the bVar slot: bVar: A list of the diagonal inner blocks (upper triangles only) of the positive-definite matrices on the diagonal of the inverse of ZtZ+Omega. With the appropriate

Re: [R] Confidence Intervals for Random Effect BLUP's

2007-11-09 Thread Rick Bilonick
On Fri, 2007-11-09 at 18:55 +, Prof Brian Ripley wrote: > I think Bert's point is important: I picked up a student on it in a case > study presentation on this week because I could think of three > interpretations, none strictly confidence intervals. I think 'tolerance > interval' is fairl

Re: [R] Confidence Intervals for Random Effect BLUP's

2007-11-09 Thread Rick Bilonick
On Fri, 2007-11-09 at 10:01 -0800, Bert Gunter wrote: > Ummm... > > Define: "Confidence interval for BLUP" . > > I know what a confidence interval for a parameter or function of parameters > (which is what a predicted value is) is; but a BLUP is neither, so I don't > get what a confidence interva

[R] Confidence Intervals for Random Effect BLUP's

2007-11-09 Thread Rick Bilonick
I want to compute confidence intervals for the random effect estimates for each subject. From checking on postings, this is what I cobbled together using Orthodont data.frame as an example. There was some discussion of how to properly access lmer slots and bVar, but I'm not sure I understood. Is th

Re: [R] Executing a Function in a Loop With a ChangingValue foran Argument

2007-10-25 Thread Rick Bilonick
On Thu, 2007-10-25 at 16:26 +1000, [EMAIL PROTECTED] wrote: > I wondered if the real problem was bigger than your abstract version. > OK. Here is one way to do it > > > myfunc <- function(x) { > nam <- deparse(substitute(x)) > val <- mean(x) > cat("mean(", nam, ") =", val, "\n") >

Re: [R] Executing a Function in a Loop With a Changing Value foran Argument

2007-10-24 Thread Rick Bilonick
On Thu, 2007-10-25 at 15:34 +1000, [EMAIL PROTECTED] wrote: > There are many simple ways to do this, if I understand you correctly. > Here is an example > > > dat <- data.frame(matrix(rnorm(25), 5, 5)) > > names(dat) > [1] "X1" "X2" "X3" "X4" "X5" > > vars <- names(dat)[-1] > > vars > [1] "X2" "X3

[R] Executing a Function in a Loop With a Changing Value for an Argument

2007-10-24 Thread Rick Bilonick
I want to run a function in a loop and replace one of the arguments from a large list each time through the loop. If I was writing it out manually: myfunc(x=var1) myfunc(x=var2) etc. But I want to do this in a loop where x is replaced by a new name. Something like: for(i in vars) { myfunc(x=i)

[R] Cannot Install rimage

2007-10-02 Thread Rick Bilonick
I'm trying to install rimage in R version 2.5.1 running on Fedora 6 (kernel 2.6.22.7-57.fc6 with the headers and gcc installed, along with fftw2 and libjpeg and headers): > install.packages("rimage") Warning in install.packages("rimage") : argument 'lib' is missing: using '/usr/lib/R/library' tryi