Re: [R] Meta-analysis on microaray data, when a sinlge experiment contains diferent tissues

Thank for the prompt response. On 9/21/19, ঋষি ( ऋषि / rIsHi ) wrote: > Yes this is not the best place, rather it should be better asked in > bioinformatics forums like biostar and bioconductor. > > On Sat, Sep 21, 2019 at 11:08 AM Mohammadian > wrote: > >> Hi! >&g

[R] Meta-analysis on microaray data, when a sinlge experiment contains diferent tissues

Hi! I dont know whether this is the best place to ask this question, however: Suppose I want to perform meta-analysis on 10 different microarray studies. Study Tissue-source Study1 Neuron Study2 Blood Study3 Neuron and PBMC .. Study10 ... How should I treat Study3? The R pac

[R] Problem with crossmeta package

Hi! I have difficulty crossmeta package. Especifically the datasets wont download from NCBI through R. # my code library(crossmeta) library(Biobase) library(AnnotationDbi) data_dir <- file.path(getwd(), "data") # specify where data will be downloaded gse_names <- c("GSE9601", "GSE15069", "GSE5

Re: [R] Problem in enrichR package

and cc r-help... but > don't expect the maintainer to monitor this list. (This advice is in the > Posting Guide... do re-read it.) > > On July 13, 2019 2:11:54 AM CDT, Mohammadian > wrote: >>Hi all! >> >>I used to use enrichR package for gene enrichment.

[R] Problem in enrichR package

Hi all! I used to use enrichR package for gene enrichment. However the code below does not work anymore: >enrichR::listEnrichrDbs() Error in fromJSON(dbs) : unexpected character '<' > sessionInfo () R version 3.6.0 (2019-04-26) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 7

[R] Problem with lvs Normalization

Hi! Anyone can help how I can do LVS normalization starting from an EList.raw created using: data= read.maimages(files, green.only=T, columns= list(E='gMedianSignal',Eb='gBGUsed')) thanks in advance __ R-help@r-project.org mailing list -- To UNSUBSCRI

[R] Errors with stConstruct() and STFDF()

Hey everyone, I’m new to R and this forum so I apologize in advance for any ambiguity in my question. What I want to do is create a spatiotemporal object (class st) out of an esri shapefile with multiple features and csv file containing data in long format (each row is one observation in space-t

[R] Question about Autoarima and predict function

Hi, I am trying to use autoarima function to make prediction of more than 1 items ( each has 100 values so it is 1x100 dimension matrix) with frequency 52(weekly forecast). The problem is that some of fitted arimas have drift and some not. It gives this error and stop processing Best mod

[R] a question

Hi, I must seek a favour regarding of R project, can we make an application out of R. I mean a small application that automatically runs and do the estimation automatically. Because the things I do is that I copy codes from script to work book and then it runs and gives the output. can it be