Hi!
I have difficulty crossmeta package. Especifically the datasets wont
download from NCBI through R.
# my code
library(crossmeta)
library(Biobase)
library(AnnotationDbi)
data_dir <- file.path(getwd(), "data") # specify where data will be downloaded
gse_names <- c("GSE9601", "GSE15069", "GSE50841", "GSE34817", "GSE29689")
get_raw(gse_names, data_dir)
# R response:
No supplemental files found.
Check URL manually if in doubt
However, the supplemental files exist and I can download them.
I wondered if there is a way to use manually downloaded datasets for crossmet?
______________________________________________
R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
