om the CRAN repository.
Formerly available versions can be obtained from the archive.
This was a transitional package from Mar 2012 to Sept 2013. Packages
depending on it ought to have changed to igraph long ago.
Consider using package ‘igraph’ instead.
As is suggested, you should insta
Loris Bennett writes:
> Hi,
>
> On Linux with R 3.5.1 and OpenMPI 2.1.0 I have built Rmpi and can run a
> simple example just using Rmpi and printing out the rank of each worker.
>
> However, when I try to use doMPI by running the following
>
> library(Rmpi)
&
- startMPIcluster(count=2)
2 slaves are spawned successfully. 0 failed.
> registerDoMPI(cl)
> clusterSize(cl)
[1] 2
> closeCluster(cl)
but the program hangs and I have to end it with Ctl-C.
Can anyone shed any light on what might be wrong?
Cheers,
Loris
--
Dr. Loris Bennett (Mr
ure that your are using the correct
combination of compiler and MPI implementation to build the packages and
then ensure that the environment is correspondingly set up for the jobs
you submit to the cluster.
I would maintain that installing Rmpi should normally be done by the
cluster administrator and the
LKARNI
>>
>> [[alternative HTML version deleted]]
>>
>>__
>>R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
>>https://stat.ethz.ch/mailman/listinfo/r-help
>>PLEASE do read the posting
X_3.0.0/com.ibm.swg.im.infosphere.biginsights.install.doc/doc/install_install_r.html
If that doesn't help (and probably even if it does) you should consider
joining the RDS Users Group, if you haven't already:
http://wiki.stat.ucla.edu/hpmrg/index.php/RDS_Analyst_Users_Group
Cheers,
Lori
that is
geographically close. Occasionally there can be problems with HTTP
vs. HTTPS, which can lead to spurious errors about a packages not being
available for your version of R. Because R caches the mirror, if you
run into any issues you might have to exit R and start again.
Cheers,
Loris
--
Dr. Lori
t;)
from the R shell and the launcher just like a regular binary.
Cheers,
Loris
--
Dr. Loris Bennett (Mr.)
ZEDAT, Freie Universität Berlin Email loris.benn...@fu-berlin.de
__
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h
..) :
> unable to load shared object
> '/Library/Frameworks/R.framework/Versions/3.3/Resources/library/rgdal/libs/rgdal.so':
Have you installed the GDAL library itself? The R package rgdal needs
this. See the "SystemRequirements" section on the CPAN page:
https://CRAN.R
e was
R core for sure, but probably both.
Is this indeed the case for R core? To my naive eye, the error message
suggests more of a known limitation, rather than a bona fide bug.
Cheers,
Loris
--
Dr. Loris Bennett (Mr.)
ZEDAT, Freie Universität Berlin Email loris.benn...@fu-berlin.de
a general problem/issue with R, or is this something more
package-specific which should be addressed on R-sig-Geo?
Cheers,
Loris
--
Dr. Loris Bennett (Mr.)
ZEDAT, Freie Universität Berlin Email loris.benn...@fu-berlin.de
__
R-help@r-project.o
pen, as it is just too subjective an
issue. However, I seem to remember that you can use /setminted to set
the style and
pygmentize -L styles
will give you a list of predefined styles. Maybe one of them is suitable.
Cheers,
Loris
--
Dr. Loris Bennett (Mr.)
ough for anyone to point me in the right direction?
I am aware that this question would be probably better posted on
r-sig-geo, but as I am just an HPC janitor trying to help a customer and
am not a geo-scientist myself, I thought I'd ask here first before
signing up to (yet another) list.
m the string, but
shouldn't there be a more straightforward way to obtain the part of the
version that is used in .libPaths() by default?
Or am I misunderstanding something?
Cheers,
Loris
--
Dr. Loris Bennett (Mr.)
ZEDAT, Freie Universität Berlin Email loris.benn...@fu-berlin.de
g in the wrong place.
>
> -pd
Now I understand. I had scenario A and FAIL, then added the symbolic
link to get B and SUCCESS, whereby normalizePath means that the actual
directory and not the symbolic link is being used.
It all makes sense now (in an odd sort of way). Thank you.
[snip
"Berry, Charles" writes:
>> On Nov 23, 2017, at 4:34 AM, Loris Bennett
>> wrote:
>>
>> Hi,
>>
>> TL;DR
>> -
>>
>> I define the path
>>
>>/cm/shared/apps/R/site-library/3.4.2
>>
>> and
quot;4", whereas it in
fact returns "4.2". So I actually set the path to ".../3.4.2" and
that's where R looks for packages.
But why does libPaths display the the path I *thought* I had set, but in
fact looks at the path I *really did* set?
Cheers,
Loris
--
Dr. Loris
tapackage consists of 'r-core' plus various other packages. These
are the packages that 'rpm' sees.
Cheers,
Loris
--
Dr. Loris Bennett (Mr.)
ZEDAT, Freie Universität Berlin Email loris.benn...@fu-berlin.de
__
R-help@r-project
-like install.
Cheers,
Loris
--
Dr. Loris Bennett (Mr.)
ZEDAT, Freie Universität Berlin Email loris.benn...@fu-berlin.de
__
R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do
ile in order to accomplish the upgrade.
> Many thanks,
> Luigi
>
Have you looked here:
https://cran.r-project.org/doc/manuals/r-release/R-admin.html#Installing-R-under-Unix_002dalikes
?
Cheers,
Loris
--
Dr. Loris Bennett (Mr.)
ZEDAT, Freie Universität Berlin Email lo
Martin Maechler writes:
>>>>>> Loris Bennett
>>>>>> on Mon, 8 Aug 2016 14:12:47 +0200 writes:
>
> > Loris Bennett writes:
> >> Thanks for the link, John. However, there is a hyphen missing. It
> >> should be:
>
Loris Bennett writes:
> Thanks for the link, John. However, there is a hyphen missing. It
> should be:
>
>
> http://www.dummies.com/how-to/content/how-to-read-errors-and-warnings-in-r.html
>
> Appropriately, with the correct URL we find the too often forgot
t have helped me recognise that I was just being dopey.
>>
>> Thanks to John and Rui.
>>
>> Loris
>>
>> writes:
>>
>>> Hello,
>>>
>>> You're missing a double quotes. Right after format=
>>>
>>> Hope this helps,
missing a double quotes. Right after format=
>
> Hope this helps,
>
> Rui Barradas
>
>
> Citando Loris Bennett :
>
>> Hi,
>>
>> When I try
>>
>> d <- as.difftime("6-08:18:33",format=%d-%H:%M:%S")
>>
>> I get:
>>
ng for the format which
corresponds to "number of days"?
I could misuse "%j" for "day of the year as a decimal number", but
ultimately the "difftime" object is still a data, rather than a length
of time and I should be looking at a package like 'lubri
be
packages to do this.
Can anyone suggest what one would call this sort of plot?
Cheers,
Loris
--
Dr. Loris Bennett (Mr.)
ZEDAT, Freie Universität Berlin Email loris.benn...@fu-berlin.de
__
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based distribution, there will often be only specific versions
available for the version of your particular distribution. In this
case, you might have to install from source.
Regards
Loris
--
Dr. Loris Bennett (Mr.)
ZEDAT, Freie Universität Berlin Email loris.benn...@fu-berlin.de
_
Dear all,
Possibly as a result of an update to R 3.3.0, a script which I had been
running regularly via cron, the following line
p_named <- p_anon + geom_dl(aes(label=user,colour=user),
list("top.points",
cex = 0.5, rot = -45, hjust =
ng 'destdir' and 'clean=FALSE', but neither helps.
Is there such an option? If so, what is it? If not, how can I preserve
'config.log'?
Cheers,
Loris
--
Dr. Loris Bennett (Mr.)
ZEDAT, Freie Universität Berlin Email loris.benn...@fu-berlin.de
Dear Pan Yang,
pan yang writes:
> Dear R-community,
>
> I faced this problem when I tried to install the R gsl wrapper in my
> university's HPC cluster. Before installing the R wrapper, I have already
> installed the 'gsl' version 2.1 in my own directory '/home/pyangac/dev'. I
> have tested the
Loris Bennett writes:
> Loris Bennett writes:
>
>> Hi Sunish,
>>
>> Sunish Kumar Bilandi writes:
>>
>>> Hi Team,
>>>
>>> I am using RedHat 5 and installed R using YUM, (R version 3.2.3) Now I
>>> want to update R version tp 3
Loris Bennett writes:
> Hi Sunish,
>
> Sunish Kumar Bilandi writes:
>
>> Hi Team,
>>
>> I am using RedHat 5 and installed R using YUM, (R version 3.2.3) Now I
>> want to update R version tp 3.3.0, but I am unable to do that, Is
>> there any alternat
vailable is
too old. R 3.3.0 requires zlib >= 1.2.5, whereas the version in the SL
repositories is 1.2.3.
So if this is the problem, then you either have to install newer version
of zlib from source or switch to RH7, which comes with zlib 1.2.7.
Cheers,
Loris
--
Dr. Loris Bennett (Mr.)
Z
Mark Fingerle writes:
> Dear all,
> I have a .txt file which contains multiple tables and I would like to
> read these tables separately in order to create graphs for each one.
> The tables are separated by a blank line, have a variable number of
> lines, fixed nr. Of rows, have a header and a c
tion, as it doesn't store class structure metadata.
>
> So again, the best bet is to secure multiple levels, the .RDdata
> image to preserve the R types, the R script to be able to identify
> the relevant variable(s), and the text version to avoid depending on
> availablility
Hi,
Fazulur Rehaman writes:
> Dear Sir/Madam,
>
> Navigation keys not working in R installed on linux (Linux version
> 3.10.0-327.10.1.el7.x86_64). I am using R version 3.0.1. When I press
> up arrow its giving "^[[A". Could you please suggest me how to
> overcome this problem.
>
> Here is my R
E=/path/to/R/3.2.3/lib64/R
export PATH=/path/to/R/3.2.3/bin:$PATH
to your .bashrc file (e.g. /home/carol/.bashrc).
HTH
Loris
--
Dr. Loris Bennett (Mr.)
ZEDAT, Freie Universität Berlin Email loris.benn...@fu-berlin.de
__
R-help@r-project.org
Hi Bjørn-Helge,
Bjørn-Helge Mevik writes:
> Loris Bennett writes:
>
>> It seems that R needs libcurl 7.28.0, but my platform (Scientific Linux
>> 6.7) only provides version 7.19.7.
>
> We got "bit" by this when upgrading to 3.2.2. If you cannot upgrade
>
Duncan Murdoch writes:
> On 29/02/2016 6:09 AM, Loris Bennett wrote:
>> Hi,
>>
>> I recently installed version 3.2.3. When I call
>>
>> install.packages("RCurl")
>>
>> I get a pop-up menu labelled "HTTPS CRAN Mirror" with a shorti
ry "(HTTP mirrors)" I get the list of HTTP
mirrors with which I am familiar from previous versions of R. These
mirrors I can reach.
I assume I have some local, probably firewall-related problem, but can
someone confirm that the HTTPS mirrors do indeed work?
Cheers,
Loris
--
D
Javier Villacampa González
writes:
> Hello,
>
> I have a silly questions:
>
> is possilbe to install R in a AIX OS Machine?
> Where can I found the download files?
>
> Thank you in advance
>
> Javier
It may be difficult to find a version pre-packaged for AIX, but you can
always compile R yoursel
Martin Maechler writes:
>>>>>> Loris Bennett
>>>>>> on Thu, 8 Oct 2015 12:07:20 +0200 writes:
>
> > Dear Luca, Luca Cerone writes:
>
> >> Dear Loris and Wolfgang, thanks a lot for the help!
> >>
Dear Luca,
Luca Cerone writes:
> Dear Loris and Wolfgang,
> thanks a lot for the help!
>
> I wasn't aware of the module project. I'd rather use the "official"
> way of having co-existent R versions in this case,
> but is a good tool to know!
As far as I can tell from a quick look, "R Installati
Dear Luca,
Luca Cerone writes:
> Dear all,
> on one shared machine we have an older R version installed. Some packages
> have known issues with that version that are fixed in newer R versions.
>
> Since that is a production machine with many jobs running we would like to
> keep things as they ar
Loris Bennett writes:
> Hi,
>
> I am collecting data about network errors and would like to visualise
> the results in some sort of graph which reflects the hierarchy of the
> components in the network (i.e. core switches are connected to leaf
> switches and nodes are connecte
Hi,
I am collecting data about network errors and would like to visualise
the results in some sort of graph which reflects the hierarchy of the
components in the network (i.e. core switches are connected to leaf
switches and nodes are connected to leaf switches).
The errors are in file which look
Loris Bennett writes:
> Hi Jim,
>
> jim holtman writes:
>
>> Here is what it does locally on my PC:
>>
>>> library("igraph")
>>> topo_data <- read.table(text = "ibcore01ibswitch01
>> + ibcore01ibswitch02
Swagato Chatterjee writes:
> *@Loris: However, you'll probably have to make sure that all the packages
> you*
> *need are installed on the server.*
>
> This is where I need a help.
Presumably the program 'cron' will be used to run your script. If the
program is run as root, you will have to as
Shivi82 writes:
> Hello All,
>
> As i am a newbie in R so most of you would have seen this question zillion
> times. I searched for the answer on this forum as well on other various
> forums however could not find the answer i am looking for.
>
> I am dplyr package and used a very basic code:
Swagato Chatterjee writes:
> Hello,
>
> I have written a R script which runs a regression of a dataset and saves
> the result in a csv file.
>
> Now this dataset has to be edited periodically which is done in a server. I
> need to run the R script in a server so that the results can also be share
Joseph Mbowe writes:
> Dear R members, I want to call my R script thorough php but no I am not
> getting output
> When I call my r script by bat file works fines also when run by Rstudio it
> works fines
> but when i cant call via php
> here is the php code:
> exec('C:/"Program Files"/R/R-3.2.0/
Hello Lionel,
Lionel SPINELLI writes:
> Hello all,
>>
> I am looking for information on how to install R on a network disk so
> that it can be used by several users mounting this network disk from
> different computers.
>
> We are using a cluster and shared computers in my lab. Those machines
>
6
>
> The PDF file is attached. So maybe it is something with your remote
> connection.
You're right. Running locally even the plot of complete network takes
less than 0.2 seconds via the X11 device. I'll have a closer look at
the connection.
Thanks,
Loris
> Jim Hol
Hi,
With the following data
ibcore01ibswitch01
ibcore01ibswitch02
ibcore01ibswitch03
ibcore02ibswitch01
ibcore02ibswitch02
ibcore02ibswitch03
ibswitch01 node001
ibswitch01 node002
ibswitch01 node003
ibswitch02 node004
ibswitch02
Loris Bennett writes:
> Hi Petr,
>
> See inline.
>
> PIKAL Petr writes:
>
>> Hi
>>
>> see inline
>>
>>> -Original Message-
>>> From: R-help [mailto:r-help-boun...@r-project.org] On Behalf Of Loris
>>> Bennett
>
Hi Petr,
See inline.
PIKAL Petr writes:
> Hi
>
> see inline
>
>> -Original Message-
>> From: R-help [mailto:r-help-boun...@r-project.org] On Behalf Of Loris
>> Bennett
>> Sent: Monday, March 09, 2015 4:35 PM
>> To: r-h...@stat.math.ethz.ch
&
--
>> From: R-help [mailto:r-help-boun...@r-project.org] On Behalf Of Loris
>> Bennett
>> Sent: Monday, March 09, 2015 2:56 PM
>> To: r-h...@stat.math.ethz.ch
>> Subject: [R] Add sum line to plot of multiple x values
>>
>> Hi,
>>
>> Here are my data:
&
Hi,
Here are my data:
> d
user files date
1 alice18 2013-09-15
2 bob 5 2013-09-15
3 carol21 2013-09-15
4 alice22 2013-09-08
5 bob 9 2013-09-08
6 carol14 2013-09-08
7 alice26 2013-09-01
8 bob 3 2013-09-01
9 carol22 2013-09-01
I would like to plot
saikiran putta writes:
> I am new to R programming and trying to mine this pdf file
> http://164.100.180.82/Rollpdf/AC276/S24A276P001.pdf. This pdf file is in
> non-English language and I'm not able to figure out how to proceed. And,
> I'm not even sure how to extract information from a PDF file,
"CasasPrat,Merce [Ontario]" writes:
> Hi,
>
> I'm new to R (was using Matlab previously)
>
> Matlab has a very convenient utility that I haven't been able to find
> in R. When working interactively, you can find a previous command that
> starts with a certain letter by typing such a letter and th
Hi Mark,
Mark Leeds writes:
> Hi All: I have a regular expression problem. If a character string ends
> with "rhofixed" or "norhofixed", I want that part of the string to be
> removed. If it doesn't end with either of those two endings, then the
> result should be the same as the original. Below
Loris Bennett writes:
> Hi,
>
> With ggplot2 I can use the following to create a rectangle
>
> geom_rect(aes(ymin=as.Date("8-Apr-2014", format="%d-%b-%Y"),
> ymax=as.Date("30-Apr-2014", format="%d-%b-%Y"),
>
Hi,
With ggplot2 I can use the following to create a rectangle
geom_rect(aes(ymin=as.Date("8-Apr-2014", format="%d-%b-%Y"),
ymax=as.Date("30-Apr-2014", format="%d-%b-%Y"),
xmin="node002",xmax="node098"),
where the x values are levels of a factor. This works if I
Loris Bennett writes:
> Hi,
>
> I have a list of dates like this:
>
> date
> 2009-12-03
> 2009-12-11
> 2009-10-07
> 2010-01-25
> 2010-01-05
> 2009-09-09
> 2010-01-19
> 2010-01-25
> 2009-02-05
> 2010-01-25
> 2010-01
=TRUE)
hist(as.Date(t$date), "years", format = "%d/%m/%y", freq=TRUE)
However, I would rather not label the breaks themselves, but instead
print the date with the format "%Y", between the breaks.
Is there a simple way of doing this?
Regards
Loris
--
Dr
names.arg=levels(t$date))
Although this works, it strikes me as a little clumsy. In particular,
the creation of the matrix for the barplot seems somewhat inelegant.
I suspect I may be missing something. Does anyone have a better
solution?
Thanks
Loris
--
Dr. Loris Bennet
Loris Bennett writes:
Bad news: I found no solution to this problem.
Good news: The problem does not occur with version 2.10.0.
Loris
> Loris Bennett writes:
>
> I get the same problem using R version 2.9.2.
>
> I would be very grateful if anyone could shed some light
Loris Bennett writes:
I get the same problem using R version 2.9.2.
I would be very grateful if anyone could shed some light on this
issue.
Regards
Loris
> loris.benn...@fu-berlin.de (Loris Bennett) writes:
>
>> Hi,
>>
>> I am getting the following error
>>
&g
loris.benn...@fu-berlin.de (Loris Bennett) writes:
> Hi,
>
> I am getting the following error
>
># (R-2.9.1/src/library/methods): gmake front
>
>/bin/sh: 0403-057 Syntax error at line 1 : `;' is not expected.
>gmake: *** [front] Error 2
&g
X 5.3.
Cheers,
Loris
--
Dr. Loris Bennett
Computer Centre
Freie Universität Berlin
Berlin, Germany
__
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https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide
loris.benn...@fu-berlin.de (Loris Bennett) writes:
> Hi,
>
> I am trying to install R 2.9.0 on AIX 5.3. During the 'make' run I get
> the following error:
>
>Error: Invalid DESCRIPTION file
>
>Invalid Priority field.
>Packages with priorities &#x
'base' or 'recommended' or 'defunct-base' must
already be known to R.
See the information on DESCRIPTION files in section 'Creating R
packages' of the 'Writing R Extensions' manual.
Execution halted
make: 1254-004 The error code
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