Re: [R] Fastest way to compare a single value with all values in one column of a data frame

2013-01-30 Thread Jessica Streicher
If you wanted this for all values in x that are smaller, i'd use x[x$a < y$a,] <- y for just the smallest: x[intersect(which(x$a < y$a),which.min(x$a)),] <- y On 29.01.2013, at 22:11, Dimitri Liakhovitski wrote: > Hello! > > I have a large data frame x: > x<-data.frame(item=letters[1:5],a=1:

Re: [R] summarise subsets of a vector

2013-01-23 Thread Jessica Streicher
Professor of Anthropology > Texas A&M University > College Station, TX 77843-4352 > > >> -Original Message- >> From: r-help-boun...@r-project.org [mailto:r-help-bounces@r- >> project.org] On Behalf Of Jessica Streicher >> Sent: Wednesday, January 23

Re: [R] Dot plot of character and numeric matrix

2013-01-23 Thread Jessica Streicher
As an example: chars<-c("A","A","B") numbers<-as.numeric(as.factor(chars)) #make this numerical plot(numbers,c(0.4,0.5,0.6),xaxt="n") #xaxt="n" says to not plot the x-axis axis(side=1,at=numbers,labels=chars) #make the axis with labels On 23.01.2013, at 10:16, Ng Wee Kiat Jeremy wrote: > Dea

Re: [R] summarise subsets of a vector

2013-01-23 Thread Jessica Streicher
Or maybe x<-matrix(test,nrow=10) apply(x,2,mean) On 23.01.2013, at 00:09, Wim Kreinen wrote: > Hello, > > I have vector called test. And now I wish to measure the mean of the first > 10 number, the second 10 numbers etc > How does it work? > Thanks Wim > >> dput (test) > c(0, 0, 0, 0, 0, 0, 0

Re: [R] Assistant

2013-01-22 Thread Jessica Streicher
You're not giving people much to work with. I googled the error, and it seems to come from the call to optim and has likely to do with bad starting parameters. That said, the documentation of fitdistr doesn't suggest it even supports "dbeta", there is only a "beta" mentioned. On 22.01.2013, at

Re: [R] Help with interpolation

2013-01-22 Thread Jessica Streicher
Next time please provide sample data in a form we can easily read in (look at ?dput for example) If i understand this right: yourData<-read.table(header=T,text=" datedays rate 1996_01_02 155.74590 1996_01_02 505.67332 1996_01_02 785.60888 1996_01_0

Re: [R] exporting simulated data

2013-01-17 Thread Jessica Streicher
Rather unspecific. Basically you'd need a loop to create the sets, and a way to write them into a file. You did not specify the format of your data. You might be able to use write, write.table or write.csv and the like. You could also have a look at ?save which allows you to save any R object.

Re: [R] Changing frequency values to 1 and 0

2013-01-16 Thread Jessica Streicher
Sorry, but i don't get the problem at all. Could you provide a bit of y by using dput()? Can you provide an example of how you want the data to look like after the transformation? On 16.01.2013, at 16:42, Andrea Goijman wrote: > Dear list, > > I'm working with a large data set, where I groupe

Re: [R] Code to fetch summary info from vector

2013-01-15 Thread Jessica Streicher
Maybe rle can help a little here rle(b>1) Run Length Encoding lengths: int [1:5] 3 5 5 8 3 values : logi [1:5] FALSE TRUE FALSE TRUE FALSE r<-rle(b>1) r$lengths[r$values] [1] 5 8 # started for the maximum but need to go home now, sorry. Will continue tomorrow if noone else finishes it. g

Re: [R] how to count "A", "C", "T", "G" in each row in a big data.frame?

2013-01-09 Thread Jessica Streicher
Sorry, you wanted rows, i wrote for columns #rows would be: test2<-apply(test[,-c(1:4)],1,function(x){table(t(x))}) #find single values in a row sapply(test2,function(row){ allVars<-paste(names(row),collapse="") u <- unique(strsplit(allVars,"")[[1]]) parts<-sapply(names(ro

Re: [R] how to count "A", "C", "T", "G" in each row in a big data.frame?

2013-01-09 Thread Jessica Streicher
If test is the structure, will test2<-sapply(test[,-c(1:4)],function(x){table(t(x))}) to what you want? On 09.01.2013, at 15:48, jim holtman wrote: > forgot the data. this will count the characters; you can add logic > with 'table' to count groups > > > x <- > structu

Re: [R] how to get a value from a list (using paste function)?

2012-12-27 Thread Jessica Streicher
Well for one, if ever someone looks at your code, cvtest[[lambda.rule]] is much easier to read and understand than eval(parse(text=paste0("cvtest$",lambda.rule))) On 27.12.2012, at 11:44, Heramb Gadgil wrote: > I am not sure why "Never ever!" > > Can you please elaborate. What are the negative

Re: [R] apply with missing values

2012-12-25 Thread Jessica Streicher
A bit of data might be useful. Make a small example and post the data with dput(). On 24.12.2012, at 20:21, jenna wrote: > I am trying to get the means of each participants avg saccade amplitude as a > function of the group they were in (designated by "shape_"), but there are > missing values in

Re: [R] Filling Lists or Arrays of variable dimensions

2012-12-21 Thread Jessica Streicher
@David : In my mind it was quite complete enough. @William: Thanks, didn't know you could do that with data frames, if i ever have to do something similar again i might try this. On 20.12.2012, at 22:39, David Winsemius wrote: > > On Dec 20, 2012, at 10:01 AM, Jessica Stre

Re: [R] Filling Lists or Arrays of variable dimensions

2012-12-20 Thread Jessica Streicher
w, sep="/") # doSomething() > } > } > > grid <- expand.grid(height, width, stringsAsFactors=FALSE) > as.character(grid[1,]) > # [1] "high" "slim", not the [1] "1" "1" you get with stringsAsFactors=TRUE > l[[ as.c

Re: [R] Filling Lists or Arrays of variable dimensions

2012-12-20 Thread Jessica Streicher
705 450 | Mobile. +44 (0) 7929 628 349 > mailto:ccampb...@mango-solutions.com | http://www.mango-solutions.com > Mango Solutions > 2 Methuen Park > Chippenham > Wiltshire > SN14 OGB > UK > > -Original Message- > From: r-help-boun...@r-project.org [mailto:r-help-b

[R] Filling Lists or Arrays of variable dimensions

2012-12-20 Thread Jessica Streicher
Following problem: Say you have a bunch of parameters and want to produce results for all combinations of those: height<-c("high","low") width<-c("slim","wide") then what i used to do was something like this: l<-list() for(h in height){ l[[h]]<-list() for(w in width){

Re: [R] Splitting up of a dataframe according to the type of variables

2012-12-17 Thread Jessica Streicher
f<-factor(c(1,1,2,3)) n<-c(1,1,2,3) df<-data.frame(f,n) sapply(df,is.factor) f n TRUE FALSE df[sapply(df,is.factor)] f 1 1 2 1 3 2 4 3 df[sapply(df,is.numeric)] n 1 1 2 1 3 2 4 3 something like that? On 17.12.2012, at 11:02, Martin Spindler wrote: > Dear R users, > > I have a dataf

Re: [R] Hello R User

2012-12-14 Thread Jessica Streicher
dataset<-data.frame(id=c(1,1,2,3,3,3),time=c(3,5,1,2,4,6)) dataset id time 1 13 2 15 3 21 4 32 5 34 6 36 ids<-unique(dataset$id) for(id in ids){ + dataset$time[dataset$id==id]<-c(0,diff(dataset$time[dataset$id==id])) + } dataset id time 1 10 2 1

Re: [R] VarimpAUC in Party Package

2012-12-12 Thread Jessica Streicher
You need to install the party package and then load the package before you can use its functions: install.packages("party") library(party) On 11.12.2012, at 16:56, Peterson, Kim - DNR wrote: > Greetings! I'm trying to use function varimpAUC in the party package > (party_1.0-3 released Septemb

Re: [R] Non-quadratic plots

2012-12-03 Thread Jessica Streicher
Nevermind, found i can at least do it with pdf() and consorts, so i'll get it right in my images, and thats the main point. On 03.12.2012, at 18:06, Jessica Streicher wrote: > I'd like to make plots that do not have the quadratic layout, like having a > plot that is twice as wi

[R] Non-quadratic plots

2012-12-03 Thread Jessica Streicher
I'd like to make plots that do not have the quadratic layout, like having a plot that is twice as wide as it is high (without distorting everything). Sadly i wasn't able to find anything in par that does that. Best would be with plot(), but i'd use the ggplot package as well if necessary. thanks

Re: [R] Excluding all missing values with dcast ("reshape2" package)

2012-12-03 Thread Jessica Streicher
This is not a reproducible example ;) anyways, dcast has an attribute: drop should missing combinations dropped or kept? does that not do what you want? On 03.12.2012, at 16:07, michael.laviole...@dhhs.state.nh.us wrote: > > Hello--I'm doing a simple crosstab using dcast: > > rawfreq <- d

Re: [R] can't integrate in loop

2012-11-30 Thread Jessica Streicher
Thats not a very precise question. I'll try anyway.. - if you use c, you need to separate the values by commas - i think you mean seq(1,100,0.1), otherwise x only has one value - function sen is not defined - If you call int(1), upper will be 1, not x[i] - why are you making a function and calling

Re: [R] For loop

2012-11-30 Thread Jessica Streicher
TRUE mtest[!duplicated(mtest[,1:2]),] id time value [1,] 13 1 [2,] 12 3 [3,] 11 4 [4,] 21 5 [5,] 23 6 On 30.11.2012, at 17:15, Jessica Streicher wrote: > Hello Bikek, > > please use dput() next time to provide the data, its easier to

Re: [R] For loop

2012-11-30 Thread Jessica Streicher
Hello Bikek, please use dput() next time to provide the data, its easier to use that. also: looking at the data provided, how would you want to decide which value of the non-unique times to retain? Just take the first one? They aren't all the same. On 30.11.2012, at 16:59, bibek sharma wrote:

Re: [R] Deviation standard & variance

2012-11-20 Thread Jessica Streicher
Anyway, need to go home. If you really only want to plot the values of all variables, and its for some reason not important what value belongs to what exact variable: plot(variances,ylim=range(variances,sdevs)) # black circles points(sdevs,col=2,pch=3) #red crosses On 20.11.2012, at 19:32, Elli

Re: [R] Deviation standard & variance

2012-11-20 Thread Jessica Streicher
rly visible in just one plot with hundreds of variables. some kind of distribution maybe, like how likely some value of variance is? do you have an example of what it should look like? Whats the purpose of plotting it? On 20.11.2012, at 19:22, Jessica Streicher wrote: > At least for me this is

Re: [R] Deviation standard & variance

2012-11-20 Thread Jessica Streicher
At least for me this is not enough information to go on Elli. What exactly is the problem? Can you post example data? On 20.11.2012, at 18:39, Elli wrote: > How I can plot the standard deviation and variance separately or is there a > graph where I can show the two? > > > > -- > View this mes

Re: [R] polynomial svms and in-sample error

2012-11-16 Thread Jessica Streicher
wrong with the asumption, that if i get those probabilities, that 0.5 is the threshold to get "the default" result? On 16.11.2012, at 16:32, Jessica Streicher wrote: > Hi again! > > This might be more of a statistical question, but anyway: > If i train several support vector m

Re: [R] Can't see what i did wrong..

2012-11-16 Thread Jessica Streicher
Fixed it by using e1071 instead.. On 15.11.2012, at 17:43, Jessica Streicher wrote: > Guess it has something t do with the values in prob.model. The classifiers > with bad predicitons have positive values and the ones with good predictions > have negative values. > > On 15.11

[R] polynomial svms and in-sample error

2012-11-16 Thread Jessica Streicher
Hi again! This might be more of a statistical question, but anyway: If i train several support vector machines with different degrees of polynomials, and as result, get that higher degrees not only have a higher test error, but also a higher in-sample error, why is that? I would assume i shoul

Re: [R] Can't see what i did wrong..

2012-11-15 Thread Jessica Streicher
Guess it has something t do with the values in prob.model. The classifiers with bad predicitons have positive values and the ones with good predictions have negative values. On 15.11.2012, at 17:18, Jessica Streicher wrote: > I'll try .. lets see > > dput(dframe) > struc

Re: [R] Can't see what i did wrong..

2012-11-15 Thread Jessica Streicher
ways occur however, you may have to run it a few times. On 15.11.2012, at 16:47, Sarah Goslee wrote: > Hi Jessica, > > Talking may help you, but it's kind of a waste of time for the > thousands of readers of R-help unless you provide a reproducible > example and full contex

Re: [R] Can't see what i did wrong..

2012-11-15 Thread Jessica Streicher
Now i let it run for one specific set and got the same bad result, then i deactivated the probabilities and got a good result, then i activated the probabilities again and got a good result .. huh??? On 15.11.2012, at 15:32, Jessica Streicher wrote: > Its not scaling.. so.. > > I g

[R] Can't see what i did wrong..

2012-11-15 Thread Jessica Streicher
with pred.pca<-predict(splits[[i]]$pca,trainingData@samples)[,1:nPCs] dframe<-as.data.frame(cbind(pred.pca,class=isExplosive(trainingData,2))); results[[i]]$classifier<-ksvm(class~.,data=dframe,scaled=T,kernel="polydot",type="C-svc", C=C,kpar=list(degree=degree,scale=scale,offset=

Re: [R] Can't see what i did wrong..

2012-11-15 Thread Jessica Streicher
Its not scaling.. so.. I guess i'll stay severely frustrated, and yes i know this is probably not enough information for anyone to help. Still, talking helps ;) On 15.11.2012, at 15:15, Jessica Streicher wrote: > with > > pred.pca<-predict(splits[[i]]$pca,trainingData

Re: [R] how Can make function for selecting the products

2012-11-06 Thread Jessica Streicher
If i understand this correctly, what you want to use is a vector or a list as a parameter to that function. getdata<-function(letterVec){ ... query<-paste("SELECT *FROM myfile1 where MODEL in", sqlListFromVector(letterVec)) ... } sqlListFromVector<-function(v){

Re: [R] Filling matrix elements with a function

2012-11-06 Thread Jessica Streicher
Not that i really understand what that shall do, but.. why do you define 2 functions that do exactly the same? why do you want to make a matrix of functions instead of a matrix with the results of functions? On 06.11.2012, at 05:11, Aimee Kopolow wrote: > Hi all, > > > I have a matrix simulat

Re: [R] Problem compiling Rnw file

2012-11-05 Thread Jessica Streicher
I'll second the full path option. Just create a variable path_to_data and concatenate it with the names of any files you need in that directory. You could also try to use relative paths if the data is "nearby" and is likely to not change that position. e.g. if the data was in '/home/r/Documents

Re: [R] Error message

2012-11-05 Thread Jessica Streicher
It depends a bit on your setup, but you could have a look at ?memory.size or ?memory.limit and see if any of that helps Jessi On 05.11.2012, at 12:49, Haris Rhrlp wrote: > Dear R users, > > I have this problem with memory i guess > > AA<-array(rep(0,96096000),dim=c(16,5,3003,400)) > Error

Re: [R] Java Exception error while reading large data in R from DB using RJDBC.

2012-11-01 Thread Jessica Streicher
Actually forget that loop, that was old code. Now remember i had to actually split the one query down into several queries to get everything. On 01.11.2012, at 18:38, Jessica Streicher wrote: > I didn't have the same exception yet, but please make sure you have a stable > connec

Re: [R] Java Exception error while reading large data in R from DB using RJDBC.

2012-11-01 Thread Jessica Streicher
I didn't have the same exception yet, but please make sure you have a stable connection (avoid wlan). I personally ran out of memory very often and had to make several queries, combining the results in R instead. This is probably not the best thing to do, but worked for me to fetch large amount

Re: [R] Select the last rows of when specific conditions are met.

2012-11-01 Thread Jessica Streicher
I really don't understand what you want to achieve and how your data presents itself. You have several combinations of trial/subject which are unique? There is a variable for each such combination that you want to test against (tt)? In addition you have data on each such combination (several set

Re: [R] Mean Help

2012-10-31 Thread Jessica Streicher
please provide a bit of the dataframe in the future using the dput() function > x<-data.frame(height=1:10, > color=sample(c("blue","green","brown"),10,replace=T)) > x height color 1 1 blue 2 2 green 3 3 blue 4 4 brown 5 5 blue 6 6 brown 7 7 green 8

Re: [R] help - extract data using column names

2012-10-30 Thread Jessica Streicher
A look at the tutorial might help here, but anyway: Say you have that dataframe down there with the name myData (you should use dput() to give us the data btw), then you can subset that by using myData[rows,columns], where left of the comma you define which rows you want, and right of the comma

Re: [R] newbie: embeding seq in a list

2012-10-30 Thread Jessica Streicher
s <- seq(0.8, 1.2, by = 0.1) as.list(s) to get the first type of list from the sequence. On 30.10.2012, at 16:51, ONKELINX, Thierry wrote: > You first example is a list of 5 items, each item is a number > The second example is a list with one item: a vector with 5 elements. > > You'll need c()

Re: [R] Memory issue with svm modeling in R

2012-10-23 Thread Jessica Streicher
a, > > Thanks for inform this and very sorry for inconvenience, Here I have > attached two Files > 1. crash.png- For Issue with Amazon Instance > 2. localmachine_error.bmp - for Issue with local machine > > Thanks > > On Mon, Oct 22, 2012 at 1:42 PM, Jessica Streich

Re: [R] Memory issue with svm modeling in R

2012-10-22 Thread Jessica Streicher
Hello Vignesh, we did not get any attachments, maybe you could upload them somewhere? On 19.10.2012, at 09:46, Vignesh Prajapati wrote: > As I found the memory problem with local machine/micro instance(amazon) for > building SVM model in R on large dataset(2,01,478 rows with 11 variables), > the

Re: [R] append for .Rdata?

2012-10-22 Thread Jessica Streicher
riment so its only around once. I'll take a look at the lazy-load stuff too, thanks. On 10.10.2012, at 19:47, J Toll wrote: > On Tue, Oct 9, 2012 at 10:35 AM, Jessica Streicher > wrote: >> Can i somehow append objects to an .Rdata file? >> >> I didn't see an o

Re: [R] For loop with i and j and multiple if statements... help!

2012-10-18 Thread Jessica Streicher
- Why are you making a matrix for lookzone if it is ever only one number? - changing a variable used for iteration is bad practice (input in this case) though you aren't changing the rows i guess. - There are too many x and too few y in those ifs. Plus this is shorter: test<-apply(input,

Re: [R] median between matrix column

2012-10-15 Thread Jessica Streicher
Actually i just saw that i copied the wrong code apply(m,2,function(x){median(c(x,m[,5]))}) it should be. Sorry if this confused anyone. On 15.10.2012, at 15:32, eliza botto wrote: > > Dear Arun and Jessica, > thnx for your reply. it realy worked out. > regards > eliza > > >> Date: Mon, 15

Re: [R] median between matrix column

2012-10-15 Thread Jessica Streicher
m<-matrix(1:10,ncol=5) > m [,1] [,2] [,3] [,4] [,5] [1,]13579 [2,]2468 10 apply(m,2,function(x){median(x,m[,5])}) [1] 5.5 6.5 7.5 8.5 9.5 Though i am not 100% sure thats what you mean. But the median of each row between two columns kind of doesn't make

Re: [R] Repeating a series of commands

2012-10-12 Thread Jessica Streicher
This is pretty confusing writeup, but if you have iterations, then yes, you need a loop or a recursion. A loop is probably easier, take a look at ?"for" or ?apply for this. there are several derivates of apply for example, say your outputs are what the code below gives you for each file,

[R] Strange email i'm getting whenever i post to the list

2012-10-10 Thread Jessica Streicher
From: 발송실패알림 Subject:[발송실패 안내] envy721c@naver.cobSDsnLzroZwg66mU7J287J20IOyghOyGoeuQmOyngCDrqrvtlojsig==teuLiOuLpC4= The only plain english in the message is that the mail was denied by the receiver Anyone else getting this? __ R-he

Re: [R] r-plot help-it prints outside frame

2012-10-10 Thread Jessica Streicher
You could set xlim and slim when using plot() plot(vector,xlab="Period",ylab="Values",xlim=range(0,length(vector)+1),ylim=range(vector,est_vector,forecast)) i think - you forgot to provide data for the vectors :) On 10.10.2012, at 11:31, piranha piranha wrote: > Hello, > > i have been doing br

[R] append for .Rdata?

2012-10-09 Thread Jessica Streicher
Can i somehow append objects to an .Rdata file? I didn't see an option for it in the save() method. dump() won't work since i have s4 objects in there. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read th

Re: [R] other way of making a table?

2012-10-09 Thread Jessica Streicher
ying > Research Engineer (Solar/BatteriesO.O#. #.O#. with > /Software/Embedded Controllers) .OO#. .OO#. rocks...1k > --- > Sent from my phone. Please excuse my brevity. &g

Re: [R] other way of making a table?

2012-10-09 Thread Jessica Streicher
--- > Sent from my phone. Please excuse my brevity. > > Jessica Streicher wrote: > >> I'm making tables for prediction results of classifiers (2 classes) >> that show the usual numbers, true positives, false positives, etc >> >> I used the c

[R] other way of making a table?

2012-10-09 Thread Jessica Streicher
I'm making tables for prediction results of classifiers (2 classes) that show the usual numbers, true positives, false positives, etc I used the command table(predictedLabels,realLabels) to make those. I just had a case though ,where one of the label vectors had only one class in it. This wil

Re: [R] Simple - Finding vector in a vector

2012-10-08 Thread Jessica Streicher
> x<-c(NA , 1 ,NA, 1 , 1 , 1 , 1 , 1 ,1 ,NA , 1) > embed(x,3) [,1] [,2] [,3] [1,] NA1 NA [2,]1 NA1 [3,]11 NA [4,]111 [5,]111 [6,]111 [7,]111 [8,] NA11 [9,]1 NA1 > which(rowSums(embed(x,

Re: [R] Why x[1] is not getting substituted?

2012-09-18 Thread Jessica Streicher
> paste("Trial and",x[1],"sheet") [1] "Trial and a sheet" > cat("Trial and",x[1],"sheet") Trial and a sheet On 18.09.2012, at 11:40, Sri krishna Devarayalu Balanagu wrote: > Suppose I want the output as "Trial and a sheet" without quotes > x=c("a", "b", "c") > print("Trial and x[1] sheet") > >

Re: [R] Can anyone help why the errors are coming and rectify it?

2012-09-17 Thread Jessica Streicher
Now i know why using else never worked for me - really, i'd consider this more of a bug than a feature of the language ;) On 17.09.2012, at 14:35, R. Michael Weylandt wrote: > And now it is easy to see why we should all the one true brace style ;-) > > Michael > > On Mon, Sep 17, 2012 at 12:29

Re: [R] Mailing List

2012-09-05 Thread Jessica Streicher
Since noone but you knows what you are interested in - unlikely. You could try to set up your mailclient with rules, deleting mails coming from the list that do not contain certain keywords. On 05.09.2012, at 12:00, Marcus Tullius wrote: > Hello there, > > is there a way I can erase my name fr

Re: [R] Create and Assign value into a variable from Another variable

2012-08-28 Thread Jessica Streicher
I'm not quite sure what you expect as a result there.. On 28.08.2012, at 12:34, Akkara, Antony (GE Energy, Non-GE) wrote: > Ok. > Here I have a variable called "Variable_1". > > Variable_1 <- "MyDataFrame" > > Here I want to create another variable, by assigning the value of > "Variable_1" . >

Re: [R] Create and Assign value into a variable from Another variable

2012-08-28 Thread Jessica Streicher
This? > x<-"y" > assign(x,1) > y [1] 1 On 28.08.2012, at 10:16, Bert Gunter wrote: > Post a small reproducible example to clarify what you want to do. > > -- Bert > > On Mon, Aug 27, 2012 at 11:48 PM, Rantony wrote: >> Hi, >> >> Here i have a variable named "MyVariable" containing particula

Re: [R] colorful plot

2012-08-21 Thread Jessica Streicher
filled.contour(Nooshin, main="Permeability",color.palette=rainbow) filled.contour(Nooshin, main="Permeability",color.palette=terrain.colors) filled.contour(Nooshin, main="Permeability",color.palette=topo.colors) not quite sure what to do with the heat map, but it has a "col" attribute. On 21.08.2

Re: [R] colorful plot

2012-08-20 Thread Jessica Streicher
Dear Nooshin, most attachments will not make it into the list. Please upload it somewhere and link to it instead. alternatively you could post reproducible code to generate your plot so far. On 20.08.2012, at 15:53, nooshin bahar wrote: > Hello guys, > > I want to increase contrast of colors i

Re: [R] no true negative data, need roc curve

2012-08-20 Thread Jessica Streicher
ow to plot points and lines, whats there more to explain? You can use the commands ?plot ? points ?lines and so on to find help on it. On 17.08.2012, at 13:18, Jessica Streicher wrote: > Above mentioned formula is wrong - maybe a typo > http://en.wikipedia.org/wiki/Receiver_operating_cha

Re: [R] no true negative data, need roc curve

2012-08-17 Thread Jessica Streicher
Above mentioned formula is wrong - maybe a typo http://en.wikipedia.org/wiki/Receiver_operating_characteristic The false positive rate is the rate of false positives, meaning how many of the total negatives (all in reality negatives(N), that is, all negatives falsely classified as positives(fp)

[R] The message headers matched a filter rule

2012-08-17 Thread Jessica Streicher
Pretty much every time i reply to a post in this list i get a bounce saying the above, + waiting for approval. I first thought it was because i didn't send in plain, but now they are and it hasn't become any better. Any other ideas? Is this normal? __

Re: [R] no true negative data, need roc curve

2012-08-17 Thread Jessica Streicher
than in threshold 1. It needs to be the same, so what the hell have you DONE? ^^ greetings Jessi On 16.08.2012, at 17:49, Jessica Streicher wrote: > To clarify: > > Is TN = 0 or do you not know TN (N)? > > On 16.08.2012, at 11:51, vjyns wrote: > >> Hi, >>

Re: [R] no true negative data, need roc curve

2012-08-16 Thread Jessica Streicher
To clarify: Is TN = 0 or do you not know TN (N)? On 16.08.2012, at 11:51, vjyns wrote: > Hi, > > I want to plot ROC curve for my detection algorithm which detects > features in different images at two different thresholds. > > 6 different images used and obtained tp, fp and fn. No tn in my c

Re: [R] Column Extraction from matrix

2012-08-16 Thread Jessica Streicher
set.seed(2) a=matrix(rnorm(400),ncol=100) #use a list aList<-list() for(i in 1:dim(a)[2]){ aList[[i]]<-matrix(a[,i],ncol=2) } #get lots of variables for(i in 1:dim(a)[2]){ assign(paste("a",i,sep=""),matrix(a[,i],ncol=2)) } On 16.08.2012, at 08:07, bantex wrote: > Hi all, > > I

Re: [R] significance of character (Anova)

2012-08-13 Thread Jessica Streicher
Also, since there apparently were warnings, how about adding them? On 13.08.2012, at 16:34, peter dalgaard wrote: > > On Aug 13, 2012, at 15:38 , Jennifer Kaiser wrote: > >>> Model: poisson, link: log >>> >>> Response: sb_ek_ber >>> >>> Terms added sequentially (first to last) >>> >>> >>>

Re: [R] Imputing data below detection limit

2012-08-13 Thread Jessica Streicher
Tempting a use of let me google that for you.. Anyway, theres a package called Imputation. I myself used the zoo package. There are probably lots of others since its a real common problem. They usually fill in places in you data that are designated as NA. I do not completely understand what yo

Re: [R] How can we compare two vectors?

2012-08-08 Thread Jessica Streicher
> x=c(5, 8, 28, 29, 30) > y=c(5, 8, 28, 29, 31) > x==y [1] TRUE TRUE TRUE TRUE FALSE > which(x==y) [1] 1 2 3 4 > which(x!=y) [1] 5 > x[x!=y] [1] 30 > y[x!=y] [1] 31 RTFM! - just kidding ;) also, this might not work for floating point numbers, theres a section in the documentation/fa

Re: [R] Coloring specific cells

2012-08-08 Thread Jessica Streicher
If its just a few tables, can't you just copy the text and color it in PowerPoint? If you'd like Latex output i could help maybe, but i'm not sure what you expect. On 08.08.2012, at 14:19, namit wrote: > Hi , > > > I have a data frame XYZ. i want to color the cells where ever we find "G" it

Re: [R] Interpreting predictions of svm

2012-08-08 Thread Jessica Streicher
You should give us the data is what you should do :) Aside from that: you can only make probability predictions if you activated it when making the model. On 07.08.2012, at 17:23, Camomille wrote: > Hi, I have some difficulties in interpreting the prediction of a svm model > using the package

Re: [R] how to identify values from a column of a dataframe, and insert them in other data.frame with the corresponding id?

2012-08-03 Thread Jessica Streicher
?merge and ?unique might help however: why is calee_id a floating point number? Ids are usually stuff thats close to a factor, integers, strings and the like, you know stuff that has a value that isn't dependant on precision. Floating points might just complicate things.. On 03.08.2012, at 12

Re: [R] Sum two Vectors of different length

2012-08-03 Thread Jessica Streicher
Actually this might be shorter for working with indices: v1[names(v1)%in%names(v2)]+v2[names(v2)%in%names(v1)] On 03.08.2012, at 15:41, Petr PIKAL wrote: > Hi > > Your description is quite long but almost uninformative about what you > really want. > > You do not say which values you want to

Re: [R] Sum two Vectors of different length

2012-08-03 Thread Jessica Streicher
Is the Index of what you cut off or add unimportant or do you have indices on which to compare them? If you just want to have the same length, not depending on any indices: v1<-1:9 v2<-1:10 minlength<-min(length(v1),length(v2)) v1[1:minlength]+v2[1:minlength] If indices are important: names(v

Re: [R] Subseting

2012-08-02 Thread Jessica Streicher
; I dotn want to take the pain of writing names of 40 companies > rather than this i want to remove the date for 9 companies which i dont need > > On Thu, Aug 2, 2012 at 3:00 PM, Jessica Streicher > wrote: > data[data$Name %in% names, ] > > should work then. You do know

Re: [R] Subseting

2012-08-02 Thread Jessica Streicher
help? You really aren't explaining your problem well^^ On 02.08.2012, at 11:18, Akhil dua wrote: > sry its not firms > its banks > > On Thu, Aug 2, 2012 at 2:42 PM, Jessica Streicher > wrote: > > On 02.08.2012, at 10:44, Akhil dua wrote: > > > Hi everyone &g

Re: [R] Subseting

2012-08-02 Thread Jessica Streicher
On 02.08.2012, at 10:44, Akhil dua wrote: > Hi everyone > > I have banking data set in long format with 4 columns.One of these columns > is bank name which consist of 49 banks and I want the data for only 40 > banks out of these 49 > so can anyone help me on how to get this 40 banks data > > My

Re: [R] Why the result is coming as NULL?

2012-08-01 Thread Jessica Streicher
I assume "result" means the invalid variable. works with sample data frame i made, so please provide an example of cdb_frame. You can use dput(cdb_frame) for that, or dput(head(cdb_frame)) if you have a lot of data. For example it could be that $Publication is a string, not numeric. On 01.08.2

Re: [R] kernlab kpca predict

2012-07-31 Thread Jessica Streicher
rmind. On 31.07.2012, at 16:25, Jessica Streicher wrote: > Hi! > > The kernlab function kpca() mentions that new observations can be transformed > by using predict. Theres also an example in the documentation, but as you can > see i am getting an error there (As i do with my own data). I&

[R] kernlab kpca predict

2012-07-31 Thread Jessica Streicher
Hi! The kernlab function kpca() mentions that new observations can be transformed by using predict. Theres also an example in the documentation, but as you can see i am getting an error there (As i do with my own data). I'm not sure whats wrong at the moment. I haven't any predict functions wri

Re: [R] Solving quadratic equation in R

2012-07-27 Thread Jessica Streicher
You could have googled "R solve equation", and would have easily reached http://r.789695.n4.nabble.com/R-solve-equation-td882585.html and would have in there found something like this: > z <- matrix(c(-8.313,-1,1), ncol=1) > polyroot(z) [1] 3.42626+0i -2.42626+0i > p<-polyroot(z) > p^2-p [1] 8.

Re: [R] Only one class shown in SVM plot?

2012-07-27 Thread Jessica Streicher
) For example will let you view a bit of that separating plane. I'm not getting creative on how to find the best values there though.. On 27.07.2012, at 10:21, Jessica Streicher wrote: > Now i'm scratching my head as well, thought it might have to do with scaling > at first, s

Re: [R] Only one class shown in SVM plot?

2012-07-27 Thread Jessica Streicher
Now i'm scratching my head as well, thought it might have to do with scaling at first, so i turned it off, and also tried scaling the data for the plot instead, but to no avail, it just switches the color, but doesn't show the correct contours. And it is at least predicting the stuff right, so

Re: [R] Only one class shown in SVM plot?

2012-07-26 Thread Jessica Streicher
example but a wild guess: if your class information is numeric the default is to do eps-regression, not classification. Use factors or specify the type you want to use. ?svm might help there. On 25.07.2012, at 15:31, Meffy wrote: > Hello users! > I'm calculating a simple model using svm(

Re: [R] Execute a function

2012-07-20 Thread Jessica Streicher
Well, what do you want to control there? Need a subset? Need an ordering? On 20.07.2012, at 15:00, Carla Moreira wrote: > Yes, I do. > > But I need to control how the permutations are done. > > Thank you. > > 2012/7/20 Jessica Streicher > You mean execut

Re: [R] Execute a function

2012-07-20 Thread Jessica Streicher
You mean executing the function for all combinations of values? For example, if you have a<-b<-c<-1:2 you would get back the values of myfunc(1,1,1) myfunc(1,1,2) myfunc(1,2,1) myfunc(1,2,2) myfunc(2,1,1) myfunc(2,1,2) myfunc(2,2,1) myfunc(2,2,2) ? On 20.07.2012, at 13:05, carla moreira wrote:

Re: [R] Boxplot names

2012-07-19 Thread Jessica Streicher
Copied the wrong lines, sry l<-rep(list(1:5),20); boxplot(l,names=sample(1:20,20)) of course. thanks for the answer . On 19.07.2012, at 16:17, Peter Ehlers wrote: > On 2012-07-19 06:58, Jessica Streicher wrote: >> When i make Boxplots with a lot of boxes, the names of them get

[R] Boxplot names

2012-07-19 Thread Jessica Streicher
When i make Boxplots with a lot of boxes, the names of them get only written down every second "column". Since they aren't in any way ordered, you don't see anymore to what they belong. example: l<-rep(list(1:5),20); boxplot(l,names=sample(20,1:20)) Is there a way to show them all, or do i have

Re: [R] problem with using apply for dataframe

2012-07-19 Thread Jessica Streicher
apply(mydataframe,2,function(x){ print(x);is.factor(x)}) [1] "1" "2" "3" "4" [1] "16.99" "10.34" "21.01" "23.68" [1] "1.01" "1.66" "3.50" "3.31" [1] "Male" "Male" "Male" "Female" X total_billtipsex FALSE FALSE FALSE FALSE > sapply(mydataframe,fu

Re: [R] how to create table with file link in Rd File

2012-07-17 Thread Jessica Streicher
Yepp, that makes much more sense, look at Eiks post for an answer. I'm terribly sorry, i confused Rd with RData. On 17.07.2012, at 15:18, Jessica Streicher wrote: > Oh, i think i get it now, you're talking about formatting a table in a > documentation file? > > O

Re: [R] how to create table with file link in Rd File

2012-07-17 Thread Jessica Streicher
Oh, i think i get it now, you're talking about formatting a table in a documentation file? On 17.07.2012, at 14:45, purushothaman wrote: > Hi, > > i need to create table like this > > -

Re: [R] how to create table with file link in Rd File

2012-07-17 Thread Jessica Streicher
Try again please, so you have a table/dataframe or some such with 4(?) columns: module_name, class_name, function_name and function_description I guess under the second line shall be an example of data in the table, but i cannot see what belongs to what column. If you have an example table alre

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