Re: [R] Question on EBImage package

This is a bug, which I just fixed in EBImage 3.13.1. As Martin suggested, please post EBImage-related questions on the Bioconductor mailing list. Greg On 06/20/2012 02:57 PM, Steven Winter wrote: > >> I am having trouble using the "resize" function (in the package EBImage) >> with matrices conta

[R] auto.arima and intervention analysis

Hello, I'm currently using auto.arima to verify the order of my arima model. I would like to use the model to conduct an intervention analysis. The problem is that, when I include a step function in auto.arima, by including a binary variable in "xreg", the arima order that auto.arima gives is diff

Re: [R] converting a matrix or data.frame into an html table

Have a look at hwrite() in the hwriter package: http://www.embl.de/~gpau/hwriter/index.html If x is a data frame, the following will do it: > library("hwriter") > hwrite(x, "x.html") Cheers, Greg --- Gregoire Pau EMBL Research Officer http://www.embl.de/~gpau/ On

Re: [R] ebimage problems

Dear Kraman, MagickCoreTerminus() has been present in ImageMagick for quite a long time. It seems likely that you're using a very old version of ImageMagick. Please install a newer one. Which versions of ImageMagick, R and EBImage are using ? Best regards, Greg --- Gregoire Pau

Re: [R] Save R2HTML as an object instead of file

Hi Joel, The function hwrite() of the package hwriter does that. > library(hwriter) > hwrite(iris[1:10,]) See examples at http://www.embl.de/~gpau/hwriter/ Cheers, Greg --- Gregoire Pau EMBL Research Officer http://www.embl.de/~gpau/ On 01/12/10 08:53, Joel wrote: Hi Is it possi

Re: [R] Loading an image/picture (png/jpeg/...) to screen...

quantitative image analysis or model/analyse images with statistical models, then R + EBImage is a simple and powerful alternative. Images are just matrices. Kind regards, Greg --- Gregoire Pau EMBL Research Officer http://www.embl.de/~gpau/ Oliver wrote: baptiste auguie googlemail.com> w

Re: [R] Agreement

Hi Tobias, Yes, epiR and irr provide respectively CCC and ICC, but I could not find any implementation of the total deviation index. I might just implement Lin's code. Met vriendelijke groeten, Gregoire From: r-help-boun...@r-project.org [r-help-boun

Re: [R] RWinEdt in WinEdt 6

Yes, I could do that. But the license for WinEdt 6 is not the same as the license for WinEdt 5.x, so I would have to buy WinEdt 5.x to use RWinEdt, which is a bit unfortunate. Maybe I'll do that though. Gregory -- View this message in context: http://r.789695.n4.nabble.com/RWinEdt-in-WinEdt-6-t

Re: [R] RWinEdt in WinEdt 6

Thanks for your reply Uwe. I'll just have to keep up with the cutting and pasting, which isn't so bad. But it's a useful little plugin. Thanks for your willingness to continue to develop it. All the best, Gregory -- View this message in context: http://r.789695.n4.nabble.com/RWinEdt-in-WinEdt-6

[R] RWinEdt in WinEdt 6

I'm having difficulty installing RWinEdt in WinEdt 6. I receive the following message: Error : .onAttach failed in attachNamespace() for 'RWinEdt', details: call: getWinEdt() error: WinEdt is not installed properly. I have tried following the manual instructions in the readme.txt withou

[R] RWinEdt in WinEdt 6

I'm having difficulty installing RWinEdt in WinEdt6. I receive the following message: Error : .onAttach failed in attachNamespace() for 'RWinEdt', details: call: getWinEdt() error: WinEdt is not installed properly. I have tried following the manual instructions in the readme.txt without suc

Re: [R] Poblems wih EBImage

installing ImageMagick ? Hope this helps, Regards, Greg --- Gregoire Pau EMBL Research Officer http://www.embl.de/~gpau/ R Heberto Ghezzo, Dr wrote: Hello, Working with Windows 7 in a HP laptop with R-2.10.1 I download and installed ImageMagick-6.3.7.7-Q16-Windows-dll.exe and GTK 2.12.9-win32-2, then

Re: [R] Unable to load EBImage

previous version of ImageMagick (such as 6.5.x). Hope this helps, Best regards, Greg --- Gregoire Pau EMBL Research officer http://www.ebi.ac.uk/~gpau/ Lamke wrote: Hi group, I've spent half a day trying to figure this out and searched through different forums. I've tried to lo

Re: [R] black cluster in salt and pepper image

:10] See http://www.bioconductor.org/packages/release/bioc/html/EBImage.html how to download/install EBImage. Best regards, Greg --- Gregoire Pau EMBL Research Officer http://www.ebi.ac.uk/~gpau/ Sylvain Sardy wrote: Hi, on a lattice, I have binary 0/1 data. 1s are rare and may form clu

Re: [R] R2HTML Report number format, or Better Way?

..) and supports advanced HTML/CSS formatting options. Best regards, Greg --- Gregoire Pau EMBL Research Officer http://www.ebi.ac.uk/~gpau/ L.A. wrote: Here I am again with question I'll feel foolish for asking, when I see the answer. I'm trying to produce a report and here'

Re: [R] automated image processing

: http://www.bioconductor.org/packages/release/bioc/html/EBImage.html Hope this will help, Greg --- Gregoire Pau EMBL Research Officer http://www.ebi.ac.uk/~gpau/ Martial Sankar wrote: Hi, I am looking for a R package which is capable to process and analysis pictures of tissues (stained) in an

Re: [R] boxplot, data frame and html

row.bgcolor='#ffdc98', br=TRUE) hwriteImage('caixa.jpg', p, br=TRUE) hwrite('', p, br=TRUE) closePage(p) Greg --- Gregoire Pau EMBL Research Officer http://www.ebi.ac.uk/~gpau/ Silvano wrote: Hi, I'm trying put in same page: - a data frame with 3 columns and 45 lin

Re: [R] bwimage

org/packages/release/bioc/html/EBImage.html More information can be found in the vignette: http://www.bioconductor.org/packages/release/bioc/vignettes/EBImage/inst/doc/EBImage-introduction.pdf Best regards, Greg --- Gregoire Pau EMBL Research Officer http://www.ebi.ac.uk/~gpau/ alicedug...@bt

Re: [R] EBImage not loading

version (2.6.2) is pretty outdated. Best regards, Greg --- Gregoire Pau EMBL Research officer http://www.ebi.ac.uk/~gpau/ Quin Wills wrote: Hello all I've just spent a few joyless hours trying to get EBImage to install in R. I'm running Ubuntu (Hardy Heron), fully updated (inclu

Re: [R] newbie HWRITER package question

rg/code/browser/sorttable/sorttable.js' p = openPage('test.html', link.css=lcss, link.javascript=lj) hwrite(iris, p, table.class='sortable', row.bgcolor='#fff4f4') closePage(p) browseURL('test.html') Hope this helps, Best regards, Greg -- Gregoire Pau EMBL Res

[R] Testing for symbolic links

Hello, How can I test in R whether a file is a symbolic link or not ? I haven't found anything relevant in R-help but I may be wrong. Thanks ! Greg --- Gregoire Pau Research Officer EMBL Heidelberg, Germany http://www.ebi.ac.uk/~gpau/ __ R-h

[R] [R-pkgs] hwriter - Writing R objects in HTML format

//www.ebi.ac.uk/~gpau/hwriter/ Its CRAN page is http://cran.r-project.org/web/packages/hwriter/ Hoping this package will be useful to the R community, Best regards, Greg -- Gregoire Pau EMBL/EBI Cambridge, UK http://www.ebi.ac.uk/~gpau ___ R-packages mail

[R] [R-pkgs] hwriter - Writing R objects in HTML format

//www.ebi.ac.uk/~gpau/hwriter/ Its CRAN page is http://cran.r-project.org/web/packages/hwriter/ Hoping this package will be useful to the R community, Best regards, Greg -- Gregoire Pau EMBL/EBI Cambridge, UK http://www.ebi.ac.uk/~gpau ___ R-packag