[R] Insu scribe

-- Anne 耀日 [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and

Re: [R] Rename variables starting with digits

2` = c(5, 5, 6, 4, 5, 3), `3_T3_start` = c(4.76, 5.1, 3.87, 3.61, 2.83, 3.7), `3_T3` = c(7, 3, 4, 2, 5, 3), `4_T4_start` = c(6.09, 6.99, 5.21, 5.19, 5.02, 6.34), `4_T4` = c(4, 5, 5, 4, 3, 6)), row.names = c(NA, -6L), class = c("tbl_df", "tbl", "data.frame"

[R] Rename variables starting with digits

understand what I'm doing wrong. ```{r} behavioral_df <- behavioral_df %>% rename_with(.fn = ~paste0("v"), starts_with('^\\d')) ``` I appreciate if you can help. Best, Anne [[alternative HTML version deleted]] __

[R] Change of language interface in R

Can anyone please tell me how to change the language interface so as to receive error messages in English. Currently it's a mixed jargon of French an English. Thank you for any help. Anne [[alternative HTML version deleted]] __ R-h

Re: [R] Code modification for post-hoc power

Dear Michael, Thanks a lot for your suggestion. This is what I am trying to do with R (longpower and gee packages). But I am getting stuck with a confusing error message sent earlier I don't understand. Best, Anne -Message d'origine- De : Michael Dewey [mailto:li...@dewey.m

[R] Code modification for post-hoc power

subject. Yours sincerely, Anne __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal,

Re: [R] Strange paradox

hypothesis that the extra parameters are all zero. But I might be wrong... -Message d'origine- De : CHATTON Anne Envoyé : vendredi, 5 octobre 2018 10:46 À : 'r-help@r-project.org' Objet : Strange paradox Hello, I am currently analysed two nested models using the same sample

[R] Strange paradox

), suggesting that the confounders (x3 and x4) account for the prediction of the dependent variable. Does anyone have an explanation of this strange paradox? Thank you for any suggestion. Anne __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and

[R] Problems to obtain standardized betas in multiply-imputed data

nts of the multiply-imputed regressions using this command : sdBeta <- lm.beta(FitImp) I get the following error message: Error in b * sx : argument non numérique pour un opérateur binaire Can anyone help me with this please? Anne __ R-help@r-proje

[R] Further questions

Hi R folks, In my previous post I forgot to mention that I was new to R. I was really grateful for your quick help. I have two further questions: 1) In the graph of a regression line I would like to show one specific residual yi obs - yi pred (let's take the person whose residual is 76). How do I

Re: [R] Problem with regression line

Hi Gerrit! Thank you so much! I mistakenly reversed the order of the variables of the regression. Actually what I meant to write was: lm(BloodPressure ~ Age). Best, Anne -Message d'origine- De : Gerrit Eichner [mailto:gerrit.eich...@math.uni-giessen.de] Envoyé : mercredi 18 avril

[R] Problem with regression line

main = eq, xlab = "Age (Year)", ylab = "Blood Pressure (mmHg)") abline(SimpleLinearReg1, col="red") mean(Age) mean(BloodPressure) abline(h=142.53, col="green") abline(v=45.13, col="green") But I cannot get the regression line. Can anybody tell me w

[R] p-value=0 running log-rank test

18 150.543 385.172 3.91e+02 Chisq= 430 on 3 degrees of freedom, p= 0 Thank you in advance. Anne. [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mail

Re: [R] Quantiles on multiply imputed survey data - mitools

Thanks so SO much. Brennan www.toxstrategies.com From: Anthony Damico Date: Wednesday, May 11, 2016 at 11:17 AM To: Anne Bichteler Cc: "r-help@r-project.org" Subject: Re: [R] Quantiles on multiply imputed survey data - mitools hi, you want se=T M_quantile <-

Re: [R] Quantiles on multiply imputed survey data - mitools

n(make.formula(get('var_name' summary(M_mean) M_quantile <- with(des_mult, svyquantile(make.formula(get('var_name')), quantiles = c(.5))) summary(M_quantile) Thanks again, Brennan www.toxstrategies.com From: Anthony Damico Date: Tuesday, May 10, 2016 at 10:37

[R] Quantiles on multiply imputed survey data - mitools

Hello, and thank you for considering this question: The svystat object created with multiply imputed NHANES data files is failing on calling survey::svyquantile. I'm wondering if I'm diagnosing the issue correctly, whether the behavior is expected, and whether y'all might have any ideas for wor

[R] Rugarch package: arfimaspec and arfimafit

following error: Error in pars[idx["mxreg", 1]:idx["mxreg", 2], 1] = fit.mean[i] : replacement has length zero Do you know where it comes from and how I can fix it? Thank you and have a nice day, Anne-Marie

Re: [R] Function, that assigns two vectors to each other

(pa=1), the pe's would be a1=84 --> pe=12; a2=113 --> pe=89, a3=96 --> pe=24, a4=76 --> pe=0 I hope, that is clearer than before :) Thanks a lot, Anne Am 24.07.2013 14:47, schrieb John Kane: > Welcome to R-help > it is a bit hard to see exactly what you want without d

[R] Function, that assigns two vectors to each other

w variable "Percentile.AG1". Every person that scored 6 in "Punkte.AG1" gets a "6" in the new variable "Percentile.AG1". The same thing should be done for the other tasks. I new to R, so I don't have any clue, how to solve that. It would b

[R] Problem with svm.tune

I am trying to learn to tune a svm model in R. I'm using the sonar data set used by David Mease in his Google Tech Talk video. I downloaded the data from his site. There are 130 observations in the training set. I am able to run a svm model. But when I try to run this command: tune_svm <-tune.sv

[R] Plot multiple Graphics via Layers

Thank very much you for your help, Anne-Marie Gallrein -- M. Sc. Anne-Marie B. Gallrein Technische Universität Dresden Institut für Klinische, Diagnostische und Differentielle Psychologie Diagnostik und Intervention 01062 Dresden Tel. +49 351 463-34004 gallr...@psychologie.tu-dresden.de X<-

[R] Spatial AND Temporal Dependency with lme, or other function?

Hi, I've got a new dataset which I don't know how to analyze with R. My knowledge about R is limited for this kind of problem. I've tried to find a solution with some spatio temporel packages and lme/lmer functions, but didn't find any similar example. I've got 10 locations on a coast on which

[R] glm convergence warning

Hello, When I run the following glm model: modelresult=glm(CID~WS+SS+DV+DS, data=kimu, family=binomial) I get the following warning messages: 1: glm.fit: algorithm did not converge 2: glm.fit: fitted probabilities numerically 0 or 1 occurred What I am trying to do is model my response variable

[R] I can't open a .nc file with the "cdfcont" function of the clim.pact package

Hello, I am new at using R. I would like to use the following functions of the "clim.pact" package: ncdfcont and retrieve.nc I have installed the package "clim.pact" in Rstudio. I have downloaded the "ncdf pack" from unicar (including ncdump and ncgen). The ncdf file I'm working on is called "es

[R] cumsum function to determine plankton phenology

Apologies for the empty email earlier! I have species abundance data sampled at a weekly frequency or sometimes monthly depending on the year. The goal is to identify the dates in an annual cycle in which the cumulative abundance of a species reaches some threshold. Here's an example of the data

[R] cumsum formula to determine plankton phenology

Dear R-users -- -- Heather Anne --- Heather A. Wright, PhD candidate Ecology and Evolution of Plankton Stazione Zoologica Anton Dohrn Villa Comunale 80121 - Napoli, Italy website<http://www.szn.it/SZNWeb/cmd/ShowArchiveItem?TYPE_ID=HUMANRESOURCE&

Re: [R] Is using glht with "Tukey" for lme post-hoc comparisons an appropriate substitute to TukeyHSD?

appropriate to use interaction_average=TRUE when non-significant interaction terms are present in the model, or does it depend on your specific research questions? Alternatively, should you just remove non-significant interaction terms from the model? Thank you, Anne Quoting "Rich

Re: [R] Is using glht with "Tukey" for lme post-hoc comparisons an appropriate substitute to TukeyHSD?

. Both TukeyHSD and glht give essesntially identical confidence intervals for the example in ?glht. What aren't you satisfied with? amod <- aov(breaks ~ tension, data = warpbreaks) confint(glht(amod, linfct = mcp(tension = "Tukey"))) TukeyHSD(amod) On Mon, Jan 2, 2012 at 6:19 PM,

[R] Is using glht with "Tukey" for lme post-hoc comparisons an appropriate substitute to TukeyHSD?

sts generated from the glht code is providing me with appropriate p-values for my post-hoc comparisons. I feel like I have reached a dead end and am not sure where else to look for information on this issue. I would be grateful for any feedback on this matter. Anne Cheverie M.Sc.

[R] How much data can R process?

Would like to know how much data can R process - number of rows and columns? [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-proj

[R] Comparing two lines - Ancova: lm or aov?

Hello! I have measurements (length and volume) of fish collected in two years. I want to know if the the relationship between length and volume is the same for both years. The number of fish measured is different for each year. I don't know whether lm or aov is more appropriate to use. Here are t

Re: [R] Odp: For-loop

>Hi Petr, > >thank you, I got it. In fact I was looking for the function aggregate() which >I didn't know. > >aggregate(x = t(data), by = list(cov$Month, cov$Area), FUN = "sum") > >that is doing exactly what I need. > >Anne >-Ursprüngli

[R] For-loop

it work or what would be an easier solution? Thank you for your help, Anne data=data.frame(matrix(1:99,nrow=5,ncol=36)) colnames(data)=c(paste("plot",1:36)) cov=data.frame(rep(1:3,12),c(rep("Jan",12),rep("Feb",12),rep("Mar",12)),rep(c(1,1,1,2,2,2,3,3,3,4,4,4)

[R] Nemenyi test as a post-hoc test to Kruskal Wallis

be a problem, that my model isn't balanced? In Class1 I happen to have 4 elements, while there are 90 in class2. Thank you for your help, Anne ___ GRATIS: Spider-Man 1-3 sowie 300 weitere Videos! _

Re: [R] SEM : Warning : Could not compute QR decomposition of Hessian

find them. Thanks again, Regards, Anne John Fox a écrit : Dear Anne, I started to diagram your model but stopped when I noticed some problems: (1) Some variables, such as pays_alti, are clearly endogenous, since they have arrows pointing to them, yet are declared as fixed exogenous varia

[R] SEM : Warning : Could not compute QR decomposition of Hessian

tx_chomage, auto33, NA pourcagric <-> pourcagric , auto34, NA pourc_jeunes<-> pourc_jeunes , auto36, NA pop99<-> pop99 , auto36, NA rev_imp_foyer <-> rev_imp_foyer , auto38, NA eq_CONC <-> eq_CONC, auto39, NA eq_sante <->eq_sante , auto40, NA eq_edu<->

Re: [R] Producing residual plots by time for lme object

The plot also works if you replace "na.exclude" with "na.omit". On Wed, 7 Jul 2010, Deepayan Sarkar wrote: DS > On Fri, Jul 2, 2010 at 11:40 AM, Gregory Gentlemen DS > wrote: DS > > Fellow R-users, DS > > DS > > I have a longitudinal data set with missing values in it. I would like to produce

[R] how to work with big matrices and the ff-package?

really glad if anybody can help me understanding the functionality and show me how to convert between the different data types. Thanks in advance, Anne S. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.

Re: [R] total summary of matrix

Thanks, that helped! -- Anne Skoeries Am 05.02.2010 um 10:40 schrieb Patrick Burns: summary(c(the.matrix)) should work for you. Or perhaps more telling: summary(as.vector(the.matrix)) On 05/02/2010 09:33, Anne Skoeries wrote: Hi, is there a way to receive a total summary of a numerical

[R] total summary of matrix

atrix. Anyone an idea how to do it? Thanks in advance, -- Anne Skoeries __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide comm

Re: [R] How do people use Sweave / R / Databases

ackage was just for building a set of functions for my use or to contribute to cran. But, another use is to "package" up an analysis with all the data, functions, etc, including sweave scripts. Your work can then be repeated by someone else who has installed R. Anne __

Re: [R] Plotting numeric values against non numeric items

Check out the interaction.plot function. On Fri, 8 Jan 2010, lse1986 wrote: l > l > Hi i want do a line graph. l > l > My y axis contains numeric values. My x axis contains non numeric l > statements. l > l > This is what i want the graph to look like. l > l > When i try to plot this graph

[R] Introduction to mark-recapture analysis in R?

!  Cheers, Anne -- Jetzt kostenlos herunterladen: Internet Explorer 8 und Mozilla Firefox 3.5 - sicherer, schneller und einfacher! http://portal.gmx.net/de/go/atbrowser [[alternative HTML version deleted]] __ R-help@r-project.org

[R] tktext-window smaller than text

column=1, row=0, sticky="ns") tkgrid(scrergHor, column=0, row=1, sticky="we") tkinsert(txt, "0.0", paste(capture.output(resultKmean), collapse="\n")) Trying the upper code would wrap the lines that are contain more than 100 characters. How can I ke

[R] For loop isn't working correctly

Hi. With your help, I've fixed the errors in my for loops. But now, the for loop isn't working correctly. There should be a plot, but there's no plot when I run the for loop.. This is the code: letters = c("A","B","C","D","E","F","G","H","I","J") numbers = 1:3 for(i in 1:6){

[R] Problems with code

The following code isn't working and we can't figure out why.. letters = c("A","B","C","D","E","F","G","H","I","J") numbers = 1:3 for(i in 1:6){ #6 letters for (j in 1:3) { #3 numbers for (k in -1:1) {

[R] Pattern Matching within Vector?

#x27;t count. Keep vector= (V,I,PT,M,E), count =5 OK. There must be a more elegant way to do this! Something with vector-wise pattern matching or so?... By the way, I dont care e.g. which of "V" or "MV" is counted, what is important is that they are only counted as 1. Thank

Re: [R] summary of rpart-Object in tktext window?

Thanks! That's it! Perfect! -- Anne Skoeries Olgastr. 54 74072 Heilbronn Phone: +49 (0)7131 - 390 33 33 Mobil: +49 (0)176 - 212 37 770 Mail: h...@anne-skoeries.de Am 14.09.2009 um 15:50 schrieb Henrique Dallazuanna: tkinsert(tex, "end", paste(capture.output(summary(fit)), c

[R] summary of rpart-Object in tktext window?

ummary of an object is a list, I always get back the following error-message: cannot handle object of mode 'list' So, is there a different tk-window I should use for this kind of "list" or does anyone have an idea how to put the list into a tktext- wi

[R] Copy & Paste from tktext on Mac

ackages: [1] tcltk stats graphics grDevices utils datasets methods base other attached packages: [1] tkrplot_0.0-18 rpart_3.1-44 relimp_1.0-1 Thanks so much! -- Anne Skoeries __ R-help@r-project.org mailing list https://stat.ethz.ch/mai

[R] boxplot with log="y" and values starting at 0

g of the boxes, because some of the mins and first quantiles are 0. Can anybody help and tell me how I can generate a logarithmic y scale starting at 0? Thanks in advance, -- Anne Skoeries [[alternative HTML version deleted]] __ R-help@r-

Re: [R] calling a function with dynamically generated buttons

Thanks, works just fine! Great! -- Anne Skoeries Am 12.08.2009 um 16:04 schrieb jim holtman: Untested, but try something like this: for(i in 1:(reihen-1)) { but <- tkbutton(base, text = classi[i], command = local({ anzeige <- data.matrix(dataframe[i,-c(s

[R] calling a function with dynamically generated buttons

d 3 buttons and choose button1, it generates a plot with the parameters of button3. The same plot after pressing button2 or button3. How can I make sure, that each button calls the function with it's "own" parameters? So that button1 calls the function with the first row of m

[R] error message "memory not mapped"

d base packages: [1] tcltk stats graphics grDevices utils datasets methods base Thanks for the help, -- Anne Skoeries [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinf

[R] help with randomisation test...

times. And make a histogram of the resulting corelation coefficients. You see, this is quite complicated. Does any of you have any idea how to start? I am very very grateful for any suggestions! The helper will get a parcel with swiss chocolate ;-) !! Best wishes from Bern, Anne -- Anne

Re: [R] remove multiple columns by name from dataframe

That works perfekt! Thanks so much! -- Anne Skoeries __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self

[R] remove multiple columns by name from dataframe

= -delete) newData <- data[-delete] But as I try the way with a minus I'll get the message: "invalid argument to unary operator" There must be a simple way to delete all of the columns, but I just don't get it. Thanks for your help, -- Anne Skoeries

[R] variable driven summary of one column

nd if I try summary(data[get("variable)] it gives me back a different result since the data isn't a factor anymore but a list. Thanks for the help, Anne __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PL

[R] Genstat into R - Randomisation test

INDOW=1; ORIENTATION=vertical; KEY=0; BARCOVERING=1.0] slope; PEN=2 Does anybody have done something similar and has any idea how to make the randomisation part? I would be very grateful for any help!! Thanks in advance, Anne -- Anne Kempel Institute of Plant Sciences University of Bern

[R] Syntax in lmer...

RGR~Fertilizer+Status+Fertilizer:Status+(1|Age)+(1|Family/Species)+(0+Fertilizer|Family/Species),data=rgr) I`m thankful for any comments! anne -- Anne Kempel Institute of Plant Sciences University of Bern Altenbergrain 21 CH-3103 Bern kem...@ips.unibe.ch __ R-h

[R] lmer

RGR~Fertilizer+Status+Fertilizer:Status+(1|Age)+(1|Family/Species)+(0+Fertilizer|Family/Species),data=rgr) I`m thankful for any comments! anne -- Anne Kempel Institute of Plant Sciences University of Bern Altenbergrain 21 CH-3103 Bern kem...@ips.unibe.ch __ R-hel

[R] Problem with RMA using limma, oligo and pdInfoBuilder packages

know if the problem is in the package I built or if I can use some code to answer this question. I list all codes used to build and install the package “pd.ragene.1.0.st.v1” and used to analyze expression arrays below. Many thanks for your help, Anne-Marie Madore ## building the

[R] cosinor analysis

me some advices, please!? Thanks Anne Berger Institute of Zoo- and Wildlife Research, Berlin, Germany Swedish University of Agricultural Sciences, Dept. of Wildlife, Fish and Environmental Studies, Umeå, Sweden [[alternative HTML version deleted

[R] tryCatch - return from function to main script

ample - I promise to look deeper into the details of exception handling in R when I'm back. Thanks a lot!! Anne-Marie __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.

Re: [R] recursively divide a value to get a sequence

Wed, 2008-07-09 at 11:40 +0200, Anne-Marie Ternes wrote: >> Hi, >> >> if given the value of, say, 15000, I would like to be able to divide >> that value recursively by, say, 5, and to get a vector of a determined >> length, say 9, the last value being (set to) zero

[R] recursively divide a value to get a sequence

t. Thanks a lot for your help, hope the question is not too dumb... Anne-Marie __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.

Re: [R] Sweave / Latex per-chapter output

all this I can get "whole document" PDFs or "per-chapter" PDFs - Great! Actually, then I go on and feed the tex file(s) to "latex2html", a great tool, to generate HTML equivalents all ready with navigation, buttons and all. Maybe it's not yet perfect, but for sur

[R] position legend below x-axis title

graphical example with code would be very helpful. So, the question is, if there is per chance a way to pass "side" and "line" arguments to "legend", and if not, what is the best way to do what I try to do? BTW, the plot types involved are mostly line plots and barplot

Re: [R] Binning groups

On Thu, 22 May 2008, francogrex wrote: f > f > Hi, this is probably quite simple but I can't seem to do it correctly. I have f > a data frame of counts of infections in different ages; something like: f > count=c(1, 1, 1, 2, 2, 2, 3, 3, 3, 3, 4, 4, 4, 4, 4, 7, 8, 8, 9, 9, f > 10, 11, 15, 17,

[R] Sweave / Latex per-chapter output

g incidence rates several times in later chapters). If there is a better way to split the code without having to requery the database at each chapter, I'll be glad to know about that too! BTW, I'm working on Ubuntu Linux. Thanks a lot for your insight, Anne-Marie

Re: [R] two graphs in one figure?

bars had contour lines (more like the barplot)... would that be possible? Thank you so much again. Anne-Katrin Barplot is probably not the best way here (it is possible, but more work

Re: [R] two graphs in one figure?

axis(4,at=c(1,2,3,4,5,6)) text(6,2.9, "2nd y-axis", srt = 270, xpd = TRUE) par(new=TRUE) plot(x, y2, lty=2,type="l", xlab="x-axis", ylab= "y-axis") I dont think "barplot" is the right thing to use here since I cant specify the x-valueswhat can I

[R] two graphs in one figure?

that the "0"-values from the barchart are displayed as well? Thank you so much! Anne-Katrin -- Psst! Geheimtipp: Online Games kostenlos spielen bei den GMX Free Games! http://games.entertainment.gmx.net/de/entertainment/games/free [[alternative HTML version deleted]

[R] genotype analysis

h basic statistical than R questions. But I'd be glad if you could help me find the best solution for my type of analysis, resp. point me to good resources that show me how to do this. The problem is that most resources show "how to" do the analysis, but they don't explain at all h

[R] p-value in Spearman rank order

Dear R-helpers, I would like to do a Spearman rank order test, and used the cor() function with the method "spearman". It gives me a number (correlation coefficient?) , but how can I get the p-value? Thank you for the help in advance! Regards, Anne-Katrin -- [[a

Re: [R] How to make reference to R in the method section in a scientific article? (fwd)

On Mon, 4 Feb 2008, Falco tinnunculus wrote: Ft > Dear all, Ft > Ft > How do I make reference to R in the method section in a scientific article? Ft > Should I state the web aderess? Ft > Ft > And, is this the proper way to report the lme test? Ft > Ft > Ft > "The relationships were assumed to be

Re: [R] How to make reference to R in the method section in a scientific article?

On Mon, 4 Feb 2008, Falco tinnunculus wrote: Ft > Dear all, Ft > Ft > How do I make reference to R in the method section in a scientific article? Ft > Should I state the web aderess? Ft > Ft > And, is this the proper way to report the lme test? Ft > Ft > Ft > "The relationships were assumed to

Re: [R] book on regular expressions

not locate that message on the CH > archive. CH > CH > Thanks. CH > -Christos There are MANY FREE tutorials on regular expressions. Just google regular expressions tutorial. Anne __ R-help@r-project.org mailing list https://stat.ethz.ch/mai