Hello,
Inline.
Às 22:44 de 29/04/20, Ana Marija escreveu:
Hi Rui,
thanks for getting back to me
so I tried your method and I got:
sum(b$PHENO==2, na.rm=T)
[1] 828
sum(b$PHENO==1, na.rm=T)
[1] 859
Can you please tell me if
b$PHENO <- (b$FLASER == 2 | b$PLASER == 2) + 1L
just assigns PHENO
I just encountered something that looks exactly like that with R
4.0.0 and the latest RStudio AND with Rtools40 installed under Windows
10 (AND some manual adjustment of the path to delete references to old
versions of Rtools and make sure Rtools40 was there).
I got around it by h
Wouldn't packages that have to be built from source on installation
require Rtools?
Bert Gunter
"The trouble with having an open mind is that people keep coming along
and sticking things into it."
-- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )
On Wed, Apr 29, 2020 at 6:48 PM
On 2020-04-29 19:55 -0400, ProfJCNash wrote:
> In updating (an older computer with) Linux Mint 18.3 I tried to add
> the repository
>
> deb https://cloud.r-project.org/bin/linux/ubuntu xenial-cran40/
>
> as per the "Download R for Linux" instructions. This gave an error
> that there was no Releas
In updating (an older computer with) Linux Mint 18.3 I tried to add
the repository
deb https://cloud.r-project.org/bin/linux/ubuntu xenial-cran40/
as per the "Download R for Linux" instructions. This gave an error
that there was no Release.key file.
After some investigation, I found that
deb ht
Careful so you don't overwrite an existing ~/.Renviron file; it's safer to
use something like:
cat('PATH="${RTOOLS40_HOME}\\usr\\bin;${PATH}"\n', file="~/.Renviron"
append=TRUE)
/Henrik
On Wed, Apr 29, 2020, 15:33 Fox, John wrote:
> Dear Steven,
>
> It's possible that Windows will hide .Ren
On 30/04/20 12:28 am, Eric Leroy wrote:
Dear all, I am sorry to see all the reactions I provoked from a
newbie user. Anyway, thank you for the answer I think that the
pcf3est function responds to my question.
Indeed the spatstat is a very impressive library and I am very grateful to the
the d
Dear Steven,
It's possible that Windows will hide .Renviron, but it's generally a good idea,
in my opinion, in Folder Options > View to click "Show hidden files" and
uncheck "hide extensions". Then .Renviron should show up (once you've created
it).
Best,
John
> -Original Message-
> F
Thank you so much, numbers add up now!
On Wed, Apr 29, 2020 at 5:09 PM wrote:
>
> While I've sent you a maths way to do it,
>
> I'd probably take this approach;
>
> # set b$pheno to 1 as default
>
> b$pheno <- 1
>
> # set the flaser
>
> b$pheno[b$flaser == 2] <- 2
>
> #set the plaser
>
> b$pheno[
https://CRAN.R-project.org/view=ExperimentalDesign
For many R experimental design packages. You might wish to bookmark
the CRAN task view page.
Bert Gunter
"The trouble with having an open mind is that people keep coming along
and sticking things into it."
-- Opus (aka Berkeley Breathed in his "
Hi Rui,
thanks for getting back to me
so I tried your method and I got:
> sum(b$PHENO==2, na.rm=T)
[1] 828
> sum(b$PHENO==1, na.rm=T)
[1] 859
Can you please tell me if
b$PHENO <- (b$FLASER == 2 | b$PLASER == 2) + 1L
just assigns PHENO=2 if b$FLASER == 2 | b$PLASER == 2 and everything else is 1?
Type
?.Renviron
?R.home
?"environment variables"
at the R prompt to get what I think should be the info you need (or at
least useful info).
Bert Gunter
"The trouble with having an open mind is that people keep coming along
and sticking things into it."
-- Opus (aka Berkeley Breathed in his "Blo
Thank you
Yousri
On Wed, Apr 29, 2020 at 5:12 PM Paul Murrell
wrote:
> Hi
>
> This behaviour is as expected.
>
> The layout.show() function is just there to help visualise what the
> layout will look like.
>
> So for testing purposes, you would do something like ...
>
> layout(...)
> layout.sho
Or if you prefer not to load an entire suite of packages to do such a
simple task you could use
b$PHENO <- ifelse(...)
or in this specific case it seems sufficient to do
b$PHENO <- pmax(b$FLASER, b$PLASER)
/Ege
On Wed, 2020-04-29 at 15:30 -0400, Patrick (Malone Quantitative) wrote:
> If you do
Hi Abby,
Once again I must say your form of communication puzzles me. Do you
believe it benefits the open source community to communicate like this?
What about contacting the package maintainer in this way:
"Hi, I was helping someone else using your package to estimate a pair
correlation function
Dear all,
Presently I am working on designing a questionnaire for my discrete choice
experiment. I intend to use R for the "fractional factorial design". I have
the following objective-
The respondent has to choose one out of 4 objects. Each of the 4 objects
are classified by 5 different attribut
Dear all,
I see two issues here:
1. A new user has a hard time finding and using a specific function in
spatstat. As package authors we are always interested in such reports
and we then try to improve documentation, which is indeed a very
important part of any software project. The package is **v
Thanks. Can you kindly tell me what to read to do it the "standard way"?
Also, where can I find file .Renviron.
On 2020/4/28 下午 11:08, Duncan Murdoch wrote:
On 28/04/2020 11:02 a.m., Steven Yen wrote:
In RStudio, I enter File -> Open Project -> and browse to open a .Rproj
file. Then, I click B
In RStudio, I enter File -> Open Project -> and browse to open a .Rproj
file. Then, I click Build -> Build Binary Package. Thanks.
On 2020/4/28 下午 10:55, Duncan Murdoch wrote:
On 28/04/2020 9:56 a.m., Steven Yen wrote:
Thanks. I visited the Rtools web page and learned to run the following
line
Thanks. Updating RStudio to 1.2.5042 did fix the problem. Thank you!
On 2020/4/28 下午 11:30, Duncan Murdoch wrote:
On 28/04/2020 11:16 a.m., Steven Yen wrote:
Thanks. Can you kindly tell me what to read to do it the "standard way"?
Start with ?INSTALL, and find more details in the Writing R Ex
Hello John,
Perhaps you can help me. I am an idiot. I visited the Rtools web page
and learn to run the following lines in R: Still I am getting the same
warning message.
> writeLines('PATH="${RTOOLS40_HOME}\\usr\\bin;${PATH}"', con =
"~/.Renviron")
> Sys.which("make")
Thanks John. Where is file .Renviron located? It must be a hidden file.
I cannot find it.
On 2020/4/28 下午 08:29, Fox, John wrote:
Dear Steven,
Did you follow the instruction on the Rtools webpage to add
PATH="${RTOOLS40_HOME}\usr\bin;${PATH}"
to your .Renviron file?
I hope this help
Thanks. I visited the Rtools web page and learned to run the following
lines. I am still getting the same warning message.
> writeLines('PATH="${RTOOLS40_HOME}\\usr\\bin;${PATH}"', con =
"~/.Renviron")
> Sys.which("make")
make
"C:\\rtools40\\usr\\bin\\make.exe"
O
Hi
This behaviour is as expected.
The layout.show() function is just there to help visualise what the
layout will look like.
So for testing purposes, you would do something like ...
layout(...)
layout.show(n)
Then to actually use the layout, you would do something like ...
layout(...)
plot
Hello,
Here is another way. The condition returns FALSE/TRUE or 0/1. Add 1 to
get the expected result.
It has the advantage of being faster.
b$PHENO <- (b$FLASER == 2 | b$PLASER == 2) + 1L
Hope this helps,
Rui Barradas
Às 20:42 de 29/04/20, Ana Marija escreveu:
Thanks, I did this:
b$PHENO
> suggests that the package isn't fit for CRAN, which I consider a
> direct insult to Adrian and all the hard work he has done
This is my last post on this subject.
I just ran R check on the source package.
After 40 minutes, R check wasn't complete.
And I note the CRAN check results show the pac
Thanks, I did this:
b$PHENO<- ifelse(b$FLASER ==2 | b$PLASER ==2, 2, 1)
On Wed, Apr 29, 2020 at 2:36 PM Ivan Krylov wrote:
>
> On Wed, 29 Apr 2020 14:19:18 -0500
> Ana Marija wrote:
>
> > My conditions for creating a new column PHENO would be this:
> >
> > if FLASER or PLASER =2 then PHENO=2
> >
On Wed, 29 Apr 2020 14:19:18 -0500
Ana Marija wrote:
> My conditions for creating a new column PHENO would be this:
>
> if FLASER or PLASER =2 then PHENO=2
> otherwise PHENO=1
On Wed, 29 Apr 2020 15:30:45 -0400
"Patrick (Malone Quantitative)" wrote:
> If you don't mind using tidyverse, you ca
If you don't mind using tidyverse, you can do this easily with if_else.
b$PHENO<-if_else(...
On Wed, Apr 29, 2020 at 3:21 PM Ana Marija
wrote:
> Hello,
>
> I have a data frame like this:
>
> > head(b)
>FID IID FLASER PLASER
> 1: fam1000 G1000 1 1
> 2: fam1001 G1001
Hello,
I have a data frame like this:
> head(b)
FID IID FLASER PLASER
1: fam1000 G1000 1 1
2: fam1001 G1001 1 1
3: fam1003 G1003 1 2
4: fam1005 G1005 1 1
5: fam1009 G1009 2 1
6: fam1052 G1052 1 1
...
My conditions for cr
NOTE CITATIONS USE BRIEF EXCERPTS
> It's a complaint that no-one responded to your query within 24 hours.
Correction, it wasn't my query.
I was replying to someone else's query.
> Finally, you cast doubt on whether the function pcf3est actually does
> calculate...
You've taken what I said out
Did you update your software sources (/etc/apt/sources.list or entry in
/etc/apt/sources.list.d)?
JN
On 2020-04-29 1:01 p.m., Carlos H. Mireles wrote:
> Hello everyone, I'm trying to upgrade R from 3.6.3 to 4.0.0 using the linux
> terminal commands (sudo apt upgrade r-base r-base-dev) but I get
Hello everyone, I'm trying to upgrade R from 3.6.3 to 4.0.0 using the linux
terminal commands (sudo apt upgrade r-base r-base-dev) but I get a message
that says 3.6.3 is still the latest version. Please see the output below.
How could I fix this?
Thanks much for your help!
Carlos
===
This highlights the literal meaning of the last ] in your correct_brackets:
aff <- c("affgfk]ing", "fgok", "rafgkah]e","a fgk", "bafghk]")
To me, too, the missing_brackets looks more like what was desired, and
returns correct results for a PCRE. Perhaps the regular expression
should have been re
I don't think anyone responded last week.
> Using the mice package, I have created multiple imputed datasets to deal
> with missing data. I am looking for an example of the R code to use in
> order to analyze the set of imputed datasets using tetrachoric correlations
> in such a way that after poo
I am the main author of spatstat, and the author of the code and documentation
for pcf3est.
This is the first time in 25 years that I can remember anyone complaining about
the documentation for the spatstat package.
The available documentation for spatstat includes:
- welcome
Ah, no, this mailing list is about R, not RStudio. It is _possible_ that your
problem could be with R because RStudio requires that R be installed, but you
would need to explain how an error appears when you use RGui or R (from the
command line) to separate any RStudio issues from R issues. If t
Neglected to cc. R-help
-- Forwarded message -
From: Bert Gunter
Date: Wed, Apr 29, 2020 at 7:40 AM
Subject: Re: [R] How can I solve an error after installing RStudio
To: Vahid Borji
No. You have to go to the RStudio website/help pages. RStudio is
separate software from R.
Be
Hi there,
I downloaded Rstudio and installed it on my laptop. When I want to open
Rstudio I see the below message: The program can't start because
api-ms-win-runtime-|1-1-0.dll is missing from your computer. Try
reinstalling the program to fix this problem.
Could you please help me how I can solv
Hello
Load package: ACSWR
> data(sample)
> layout(matrix(c(1,1,2,2,3,3,0,4,4,5,5,0),2,6,byrow=T),respect=F)
> hist(sample[,1],main="Hist for sample I",xlab="sample 1",ylab="freq")
> hist(sample[,2],main="Hist for sample II",xlab="sample 2",ylab="freq")
> hist(sample[,3],main="Hist for sample III",
On Wed, 29 Apr 2020, Blume Christine wrote:
Dear Achim,
Many thanks indeed. Yes, I had thought about this too and, fortunately,
the bootstrapping confirms the results from the "normal" test. However,
I was wondering whether it is mathematically acceptable to report the
pvals from bootstrappi
Dear Achim,
Many thanks indeed. Yes, I had thought about this too and, fortunately, the
bootstrapping confirms the results from the "normal" test. However, I was
wondering whether it is mathematically acceptable to report the pvals from
bootstrapping, but non-bootstrapped correlation coefficien
Dear all,
I am sorry to see all the reactions I provoked from a newbie user. Anyway,
thank you for the answer I think that the pcf3est function responds to my
question.
Indeed the spatstat is a very impressive library and I am very grateful to the
the developers.
Best regards
Eric LEROY
Res
Christine,
thanks for the example. As far as I can see, the "coin" package does not
explicitly compute Spearman's rho. This is probably also the reason why it
isn't reported in the test output. Thus, you would have to do this "by
hand" using cor(..., method = "spearman").
Hope that helps,
Ac
Dear Jim,
Many thanks for following up on this. Sure, I can provide a sample code. At the
end of the code you see that I extract the p-value and the test statistic.
However, I cannot find the correlation coefficient rho anywhere in the object
“r”.
Best,
Christine
if(!require(pacman)) i
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