Re: [R] error in loading rgdal package

2018-02-15 Thread Loris Bennett
Hi Lily, lily li writes: > Hi R users, > > Could you help me to see this problem? I could now load "rgdal" even though > I downloaded the compressed folder. Thanks for your help. > > Loading required package: sp > Error in dyn.load(file, DLLpath = DLLpath, ...) : > unable to load shared object

[R] All Language Translation Solution !!

2018-02-15 Thread Tanya Goyal via R-help
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Re: [R] Codes to conduct network meta-analysis, gemtc package

2018-02-15 Thread shaju jacob via R-help
Thank you so much. Apologies for coming in this with this so basic query. Thanks againĀ  Sent from Yahoo Mail on Android On Fri, 16 Feb 2018 at 7:14 AM, Viechtbauer Wolfgang (SP) wrote: This aside, there is the R-sig-meta-analysis mailing list where this probably belongs: https://stat.et

Re: [R] Using gutenbergr with a firewall

2018-02-15 Thread Patrick Connolly
My question was to ascertain whether anyone had a similar problem with their firewall before I make a request to the controllers of our firewall. With any luck, I might get information that will be useful in ascertaining where the bottle-neck is. So far, nobody has indicated that they can use gu

Re: [R] [FORGED] Re: SE for all levels (including reference) of a factor atfer a GLM

2018-02-15 Thread Rolf Turner
On 16/02/18 15:28, Bert Gunter wrote: This is really a statistical issue. What do you think the Intercept term represents? See ?contrasts. Cheers, Bert Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Bre

Re: [R] SE for all levels (including reference) of a factor atfer a GLM

2018-02-15 Thread Bert Gunter
This is really a statistical issue. What do you think the Intercept term represents? See ?contrasts. Cheers, Bert Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )

[R] SE for all levels (including reference) of a factor atfer a GLM

2018-02-15 Thread Marc Girondot via R-help
Dear R-er, I try to get the standard error of fitted parameters for factors with a glm, even the reference one: a <- runif(100) b <- sample(x=c("0", "1", "2"), size=100, replace = TRUE) df <- data.frame(A=a, B=b, stringsAsFactors = FALSE) g <- glm(a ~ b, data=df) summary(g)$coefficients # I

[R] error in loading rgdal package

2018-02-15 Thread lily li
Hi R users, Could you help me to see this problem? I could now load "rgdal" even though I downloaded the compressed folder. Thanks for your help. Loading required package: sp Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/Library/Frameworks/R.framework/Versions

Re: [R] package MonteCarlo error: object 'packages' not found

2018-02-15 Thread john polo
Will do, Bert. Thank you, John On 2/15/2018 11:58 AM, Bert Gunter wrote: > This looks like the sort of thing that you should ask the package > maintainer (?maintainer). > > Cheers, > Bert > > > > Bert Gunter > > "The trouble with having an open mind is that people keep coming along > and sticki

Re: [R] Codes to conduct network meta-analysis, gemtc package

2018-02-15 Thread Viechtbauer Wolfgang (SP)
This aside, there is the R-sig-meta-analysis mailing list where this probably belongs: https://stat.ethz.ch/mailman/listinfo/r-sig-meta-analysis Best, Wolfgang >-Original Message- >From: R-help [mailto:r-help-boun...@r-project.org] On Behalf Of Bert >Gunter >Sent: Thursday, 15 February,

Re: [R] Fleming-Harrington weighted log rank test

2018-02-15 Thread array chip via R-help
Thank you David! On Wednesday, February 14, 2018, 6:05:46 PM PST, David Winsemius wrote: > On Feb 14, 2018, at 5:26 PM, David Winsemius wrote: > >> >> On Feb 13, 2018, at 4:02 PM, array chip via R-help >> wrote: >> >> Hi all, >> >> The survdiff() from survival package has an ar

Re: [R] Identify does sort the locations

2018-02-15 Thread Franklin Bretschneider
Hi Samuel GRANJEAUD, Isn't this loop more simple to retain the click-order: result = numeric(n) for (i in 1:n) { id = identify(x, y, n=1) result[i] = id } Hope this helps, Best regards, Franklin Bretschneider Dept of Biology Utrecht University brets...@xs4all.nl __

Re: [R] Best Optimization Routines

2018-02-15 Thread JamesRyan(Ryan James)/E&P North America Business Division
Thanks Paul. Appreciate the help. I'll give this a shot. Ryan James D: 713.395.1794 M: 214.843.7301 -Original Message- From: Paul Smith [mailto:phh...@gmail.com] Sent: Thursday, February 15, 2018 7:12 AM To: Ryan James/E&P North America Business Division/SKI Cc: r-help@r-project.org

Re: [R] Identify does sort the locations

2018-02-15 Thread Samuel GRANJEAUD IR/INSERM
Thanks Paul. I have started using locator(). I also found the gatepoints package that sounds interestering. https://CRAN.R-project.org/package=gatepoints Happy R, Samuel On 15-02-2018 21:50, Paul Murrell wrote: Hi Sorry, I think this has always been the behaviour (and the documentation has al

Re: [R] Identify does sort the locations

2018-02-15 Thread Samuel GRANJEAUD IR/INSERM
Hi Paul, Thanks for your answer. I am wondering if in the previous versions, let's say 2.1x, the data were in the selection order... Let me know if there a R fonction taht I can code. Do you think I should use locator function and match points on my own? Best, Samuel ___

Re: [R] Identify does sort the locations

2018-02-15 Thread Paul Murrell
Hi Sorry, I think this has always been the behaviour (and the documentation has always been wrong). Using locator() yourself could be a workaround (with a little more effort required to determine the closest data point). Paul On 16/02/18 09:32, Samuel GRANJEAUD IR/INSERM wrote: Hi Paul,

Re: [R] Identify does sort the locations

2018-02-15 Thread Paul Murrell
Hi Indeed the help page says ... "the indices of the identified points, in the order they were identified" ... and that is a complete lie. Sorry about that :( The simplest thing would be to correct the help page. It would be possible to have identify() return the order, though for backward

Re: [R] package MonteCarlo error: object 'packages' not found

2018-02-15 Thread Bert Gunter
This looks like the sort of thing that you should ask the package maintainer (?maintainer). Cheers, Bert Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) On Thu,

[R] package MonteCarlo error: object 'packages' not found

2018-02-15 Thread john polo
R-users, I can't tell what's causing the following error. The vignette does not make a reference to a "packages" option or parameter. > library(MonteCarlo) Loading required package: abind Loading required package: codetools Loading required package: rlecuyer Loading required package: snow Load

[R] Identify does sort the locations

2018-02-15 Thread Samuel GRANJEAUD IR/INSERM
Hi, Using identify function, I think I should get the index of the selected points in the order I clicked them. This is what I read in the help. But I feel they are ordered. Please let me know what I missed. In the following example, I clicked on the points labelled 7, 5 and 1, but I get 1,

Re: [R] Problem_graphic

2018-02-15 Thread Boris Steipe
I haven't been able to reproduce this because you posted in HTML and no data arrived. Use the dput() function if you want to post data. But: a frequent and trivial reason for disappearing category labels is that the plot window is too small to print them all. Try increasing the plotting window,

Re: [R] Codes to conduct network meta-analysis, gemtc package

2018-02-15 Thread Bert Gunter
This is not a free consulting service. You are expected to put in the work yourself and **may** receive help here if you have specific questions that you need help with when you do so. See the posting guide linked below for details. Cheers, Bert Bert Gunter "The trouble with having an open mi

Re: [R] long vectors not supported yet

2018-02-15 Thread Jeff Newmiller
It does appear to be an error message from R [1] regarding the difference between the maximum length of a data vector (~2^59) and the maximum length of a matrix/array/data frame dimension (~2^31). As to whether this is under consideration for change, I don't know but I would not want such infor

[R] Help with factorized argument in solve.QP

2018-02-15 Thread Philipp Graf
Hello David, same problem here with solve.QP. dykstra is causing problems as well and giving for the value NA if factorized = TRUE: library(quadprog) library(Dykstra) R<-cbind(c(1,1),c(0,1)); d<-c(t(R)%*%R%*%c(2,1)) solve.QP(solve(R),d,-as.matrix(c(1,1)),-2,1,factorized = TRUE) S<-t(

[R] Putting 733 discrete categories on Y-axis in qqplot2 as they are

2018-02-15 Thread greg holly
Hi all; I have 733 discrete categories that will go on y-axis in ggplot2. I used the following command to put the name of x-axis. scale_x_discrete (limits = c("SI", "HOMAIR", "AIR","HOMAB","SG","DI","FI","FG")) Since there are only 8 categories on x it was easy to do. Is there any way to do the

Re: [R] Best Optimization Routines

2018-02-15 Thread Paul Smith
On Tue, Feb 13, 2018 at 7:55 PM, JamesRyan(Ryan James)/E&P North America Business Division wrote: > I have a set of data, the production of oil from a well. And an equation to > predict that forecast. > > The equation requires 5 input variables which are real numbers with upper and > lower boun

Re: [R] long vectors not supported yet

2018-02-15 Thread Loris Bennett
Hi Jeff, Jeff Newmiller writes: >> Hi, >> >> I am running R 3.3.3 and getting the following error: >> >> Error in add_edges(res, edges = t(as.matrix(el[, 1:2])), attr = weight) >> : >>long vectors not supported yet: ../../src/include/Rinlinedfuns.h:138 >> >> when passing a 13 GB Transiti

[R] Codes to conduct network meta-analysis, gemtc package

2018-02-15 Thread shaju jacob via R-help
Hi,I want codes that could help me do NMA from the data. I would appreciate if you could give a dummy table with which I could practice the codes that would help read the data and calculateOdds ratio (OR) Mean difference (MD) forest plot Density plot of posterior samples Estimates of ranks probab