On Mon, 26 May 2014 09:43:45 AM Ranjan Maitra wrote:
> ...
> Though, I have to say I don't quite see how you managed to install R
> without the above package (it is a required dependency on Fedora).
> ...
> Hope the above helps!
>
> Best wishes,
> Ranjan
>
Hi Ranjan,
As I always install R from so
Nothing to do with R versions. 'quartz()' is a Mac plotting device.
?Devices
--
David
Sent from my iPhone
> On May 26, 2014, at 2:58 PM, "Megersa" wrote:
>
> Which version of R is used for quartz function please?
>
>
>[[alternative HTML version deleted]]
>
>
Which version of R is used for quartz function please?
[[alternative HTML version deleted]]
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PLEASE do read the posting guide http://www.R-project.org/posting-gu
I am trying to use the plotmo package to generate a partial dependence plot
for a CART model created with rpart. When running plotmo, I get "Error:
get.plotmo.y returned the wrong length (got 204938 expected 205000)". The
rpart predict function does indeed return 204938 results, but plotmo is
suppo
On May 26, 2014, at 9:42 AM, Prof Brian Ripley wrote:
> On 26/05/2014 13:16, ritwi...@isical.ac.in wrote:
>> Dear R helpers,
>>
>>
>> today I found something interesting in R. 0^0 gives value 1 in R. But it
>> is undefined in mathematics. During debugging a R code, I found it and it
>> effects
On May 24, 2014, at 7:47 PM, Hurr wrote:
> Thanks again Jim.
> I stuck xaxs="i" in the existing par() command and it worked as I wanted it.
> I haven't looked at the documentation yet, but that's next.
Generally a better approach would be to study the documentation first.
> Hurr
>
>
>
For numeric/continuous/normal values you can use the mvrnorm function
in the MASS package (set the empirical argument to TRUE to force the
exact correlation). Some would argue that you should not compute
correlations with binary variables, but you could generate 4 normals,
then take the last 2 and
Thanks Gabor. I'll try that.
Jack
Sent from my iPad
> On May 26, 2014, at 2:40 PM, Gabor Grothendieck
> wrote:
>
> On Mon, May 26, 2014 at 8:53 AM, Jack H. Pincus
> wrote:
>> Thanks for your suggestions. I did some further digging and found the
>> problem was more subtle. I use Dashlane, a
We would like to announce the following statistics course:
Topic: Introduction to MCMC, Linear mixed effects models and GLMM
with R
Where:Parks Canada, Banff, Canada
When: 22-26 September, 2014
Flyer: http://www.highstat.com/Courses/Flyer2014_09Banff.pdf
Website: http://www.hig
library(methods)
Regards,
Yihui
--
Yihui Xie
Web: http://yihui.name
On Mon, May 26, 2014 at 9:48 AM, Witold E Wolski wrote:
> the same script which is not working with Rscript does work with R CMD BATCH.
>
> I thought the main difference between Rscript and R CMD BATCH is where
> the ouptut ge
Thank you
I spend more time looking into it since I placed the question and it seems
that there is a conflict between two or more packages when open jointly with
the wavelet package for this specific example. I am trying to identify the
packages.
Many thanks againÂ
BarnabyÂ
-Or
Hi there,
I hope to use the emf plot produced by R in Word. However, I have
problems with setting the plot size. Here is a mini-example code:
win.metafile("abcd.emf", height =4, width=4)
plot(1:10)
dev.off()
I hope to get a emf plot with size 4x4in and pointsize 12pt. However, I
got a plot w
On Mon, May 26, 2014 at 8:53 AM, Jack H. Pincus
wrote:
> Thanks for your suggestions. I did some further digging and found the
> problem was more subtle. I use Dashlane, a password management program, which
> requires IE to run in protected mode under Win 8. Disabling protected mode
> solved t
Pass 'slab' to the rma() function instead of the forest() function. Also,
'slab' is evaluated in the data frame passed via the 'data' argument, so no
need to use empa$... And there is a 'subset' argument for rma(). Might as well
use it. This should do it:
resultREML <- rma(yi=yi, vi=vi, method=
It was passed through (see the archive). I suspect the problem is that your
question seems to be about statistics rather than about R. For future
reference, I also note that it was posted in HTML format rather than plain
text, and small, reproducible examples are always expected because it is no
Hi,
I couldn't reproduce the error.
str(wt.aligned)
Formal class 'dwt' [package "wavelets"] with 11 slots
..@ W :List of 3
.. ..$ : num [1:32, 1] -0.252 0.19 0.315 0.451 0.169 ...
.. ..$ : num [1:16, 1] 0.5324 -0.0644 0.2494 0.6509 0.1955 ...
.. ..$ : num [1:8, 1] -0.558 0.734 -0.12
You might find searching the web on this topic educational. Consider [1] and
[2], for example.
I doubt this will be changing, so you should do your exponentiation in a
function that handles your special case.
By the way, as nice as RStudio might be, it is not R... it USES R. Examples
like your
Hi,
May be you can try ?cut
dat <- read.table(text="INCOME
20100
26800
55050
82000",sep="",header=TRUE)
dat <- transform(dat, INCOME_RANGE=as.character(cut(INCOME,breaks=seq(0,1e5,
by=25e3),labels=c("below 25000", "25000-4", "5-74999","75000-9"
dat
# INCOME INCOME_RANGE
#1
Hey,
I want to build a forest plot which states author and year for a subset of
studies.
But if I use this argument:
resultREML <- rma(yi=yi, vi=vi, method = "REML",
data = subset(empa, task=="x"))
resultREML
forest(resultREML, , slab=paste(empa$author, empa$year,sep = ",")
Wrong forum. Please contact Statconn for support.
---
Jeff NewmillerThe . . Go Live...
DCN:Basics: ##.#. ##.#. Live Go...
Live: O
I have divided my data into a training set and a test set.
I have then applied a logistic transformation to the variables
in the training set and have used pam to assign the observations
to one of four clusters.
My question is How do I score the test observations now that I have the
training set w
On 26/05/2014 13:16, ritwi...@isical.ac.in wrote:
Dear R helpers,
today I found something interesting in R. 0^0 gives value 1 in R. But it
is undefined in mathematics. During debugging a R code, I found it and it
effects my program severely. So my question is why it is defined 1 in R?
Is there
I am having this problem because I need to run a meta-analysis and to align
all the variants between the different studies included in the
meta-analysis I need to know the effect allele used to get the beta (so
that I can flip the beta if the effect allele is flipped compared to all
other studies).
Thanks for your suggestions. I did some further digging and found the problem
was more subtle. I use Dashlane, a password management program, which requires
IE to run in protected mode under Win 8. Disabling protected mode solved the
problem with R help.
Jack
> On May 26, 2014, at 12:02 AM, J
Hi
I posted a question to this list, and received an email indicating that it is
awaiting moderation. However I have not received any feedback yet. If the
question is not appropriate, I’d like to know where or how I should post
differently, if possible.
Thanks and Regards
Justin Michell
__
Thanks
Mensaje original
De: Barry Rowlingson
Fecha:26/05/2014 03:11 AM (GMT-05:00)
A: Juan Ulises Bohorquez Carvajal
CC: John Kane ,"r-help@R-project.org"
Asunto: Re: [R] R License
On Sat, May 24, 2014 at 4:11 PM, Juan Ulises Bohorquez Carvajal
wrote:
> Thanks, could you send t
But then how do you know which allele is the reference and which the risk
allele (between A/T/C/G)?
2014-05-26 1:41 GMT+01:00 David Duffy :
> francesca casalino asked:
>
>
>> Does anyone know how to find the reference allele used for genetic
>> associations ran in snpStats?
>>
>> A is ref alle
Thank you Ray and Jim.
It works with file.choose().
I post following the output.
Antonio Carazo
Regional Sales Manager FOSS IBERIA.
Ph. D. student in Social Sciences.
> list.files()
[1] "DATOS1.txt" "open.exe" "R.dll"
"R.exe" "Rblas.dl
It's not a TeX issue veven, it's a Fedore issue :-)-O
pdflatex is standard in all (most) TeX distributions.
TeXLive is probably the standard TeX distribution for Linux, it has
a Windoze version and a MacTeX version (or rather two, a complete
and a basic). I have used both on Linux and the Mac re
Dear R package developers and users,
I am pleased to announce the official release of our newly developed
package 'dnet', which intends to analyse omics data in terms of network,
evolution and ontology.
It has features:
1. Identification of gene-active networks from high-throughput omics data;
2.
Dear R helpers,
today I found something interesting in R. 0^0 gives value 1 in R. But it
is undefined in mathematics. During debugging a R code, I found it and it
effects my program severely. So my question is why it is defined 1 in R?
Is there any particular reason or its a bug in the R software
This is what I tried:
R CMD check $(PKGNAME)_$(PKGVERS).tar.gz --no-manual --no-rebuild-vignettes
R CMD build --no-manual --no-rebuild-vignettes $(PKGSRC)
But still somehow the R CMD build attempts to build the vignettes (OK
with me), but also run
texi2dvi on them producing the error message below
the same script which is not working with Rscript does work with R CMD BATCH.
I thought the main difference between Rscript and R CMD BATCH is where
the ouptut gets redirected and that Rscript should preferred over the
old R CMD BATCH.
On 26 May 2014 15:12, Witold E Wolski wrote:
> I do wan
Hi,
> As I could not find any way to install pdflatex (it didn't appear on a yum
> search), I tried a method that claimed to install pdflatex via a package
Trying
yum provides */pdflatex
will yield the package name:
texlive-latex-bin-bin.
Though, I have to say I don't quite see how you ma
I do want to run a R script (runrox.sh) containing two commands:
library(roxygen2)
roxygenize("imsbInfer")
When pasting these 2 lines into R they run with no error.
But when calling:
Rscript runrox.sh
the script produces this error:
roxygen fails with
Error: Failure in roxygen block beginning
thanks for your reply, Wolfgang!
Regarding the dots/circle -"problem" I am relieved now :-)
Regarding the Trim and Fill outcome I don't really think that it's the
wrong side, I just dont know how to interpret the result.
regtest () reveals a negative z, which is not significant.
ranktest () reve
On Sun, May 25, 2014 at 7:18 PM, Jack Pincus wrote:
> I've been using R for about 9 months and just installed R 3.1.0 on a new
> computer running Windows 8.1. IE is the default browser. When I type
> help(round) or ?round the address:
> http://127.0.0.1:25976/library/base/html/Round.html app
>From help(forest.rma):
pch -- plotting symbol to use for the observed effect sizes or outcomes. By
default, a solid circle is used. Can also be a vector of values. See points for
other options.
pch.fill -- plotting symbol to use for the effect sizes or outcomes filled in
by the trim and fill
thanks for your reply, Michael!
ad primary studies:
yup, I have a large set of studies: At the moment I consider 126 data sets
in my analysis.
ad interpretation:
thats an interesting information. But usually there should be found an
effect.
ad "bit" :-):
I am irritiated, because in the plots I h
At 09:34 26/05/2014, Verena Weinbir wrote:
Hey guys,
I have tested the metafor trim and fill function (y:SD, x:SMD)on my data
set and yielded the following result:
1. missing studies on the right: 34
That seems a lot of missing studies unless you have a very large set
of primary studies.
At 13:10 22/05/2014, Verena Weinbir wrote:
Hello,
thank you very much for your replies. I am
almost done :-) but theres one study left, where
I only have sample size (not group size), mean
values and standarddeviations. Is there a way to
compute cohens d from this data?
You could assume
Hey guys,
I have tested the metafor trim and fill function (y:SD, x:SMD)on my data
set and yielded the following result:
1. missing studies on the right: 34
2. open circles on the rights side appear to be the number of additional
effects
3. adjusted d would be higher than observed d.
Since nor
On Sat, May 24, 2014 at 4:11 PM, Juan Ulises Bohorquez Carvajal
wrote:
> Thanks, could you send to me an official certificate in pdf with this
> information? Or a certified email to support the information license?
And what would be the authority that supplies such a certificate? R is
not the pr
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