Is there any package for Vector Auto-regressive with exogenous variable other
than fastVAR?
Because it is not able to solve my problem of not taking the base in the
model.
Please suggest some appropriate solution
--
View this message in context:
http://r.789695.n4.nabble.com/Is-there-any-pa
I have been experiencing issues with an R script hanging when connecting to
an Oracle database. To help debug, I found a function here in the nabble
forum and made a small test script:
#!/usr/bin/Rscript --no-restore --no-save --no-init-file
library("RJDBC")
drv<-JDBC("oracle.jdbc.OracleDri
Hi people,
I'm looking at the influence of sample size on a dataset, so I randomly
sampled from the data with different sample sizes multiple times using
the "sample" and "replicate" function. For example:
/replicate(1000, sample("variable name", "sample size", replace=T))/.
I saved the data,
Data attached - didn't realize I could do that last night. Here's the data
inport piece of my code, change the pathname to your computer.
asym<-read.csv('/Users/kirstensimmons/Desktop/Asym04.csv')
asym
#put the data into a data matrix
asym_matrix<-data.matrix(asym)
On Thu, Oct 4, 2012 at 6:35
On Oct 3, 2012, at 22:27 , arun wrote:
> HI,
>
> I guess I understand what you meant (read the very first post on the same
> subject).
Umm, the first post on "(no subject)" that I have is about Ruby on Rails from
March 2010
Please use sensible subject lines, folks!
-pd
--
Peter Dalgaa
On Oct 3, 2012, at 12:58 PM, Kirsten wrote:
> Hey everyone,
>
> I'm working on a contour plot depicting asymptomatic prevalence at varying
> durations of infectiousness and force of infection. I've been able to work
> everything out except for this one - my legend title keeps getting cut off.
Off-topic here. Try https://stat.ethz.ch/mailman/listinfo/r-sig-debian.
I also strongly recommend that you be more specific about what you have tried
and how it didn't work as you expected when you post there.
---
Jeff Newmil
That is silly. The primary difference is that certain bugfix patches have been
applied. A side-effect of this "first patched" status is that unintentional
bugs may have been introduced, so unless you have already encountered a bug
that was patched there then you are likely better off sticking w
On Oct 3, 2012, at 1:58 PM, Mark B wrote:
> Hi,
> I am trying to color the data points on my boxplot but I only get the
> default black.
You mean the outlier points?
> Not sure why. Any ideas?
Look at:
? bxp
... and try ,,, outcol="red"
> Thank you,
> Mark
>
> Here is my code.
>
>
>
On Oct 3, 2012, at 12:42 PM, kkarr wrote:
> Hi,
> I am having trouble installing a previous version of a package, and multiple
> version of the package in R 2.12 or 2.15. I have download the tar.gz
> packages from the CRAN archive, and created an folder holding all the files.
>
> install.packa
Hi
I am comparing different interpolation methods on climate data. I have
found quite a few functions (e.g. spline and kriging) but I wonder if
Nearest-neighbor interpolation and Natural neighbor function are
available in an R package?
Thanks,
Camilo
Camilo Mora, Ph.D.
Department of Geog
Hi,
I am trying to color the data points on my boxplot but I only get the
default black.
Not sure why. Any ideas?
Thank you,
Mark
Here is my code.
> dat.g100 <- dat.sg[100,] # selected gene (row) from a dataframe of
37 columns
> d1 <- as.matrix(dat.g100[,1:18]) # subset 1
> d2 <- as.matrix(d
HI,
I guess I understand what you meant (read the very first post on the same
subject).
Try this:
set1<-structure(list(ID = c("ds001", "ds001", "ds001", "ds001", "ds001",
"ds001", "ds001", "ds001", "ds001", "ds001", "ds001", "ds001",
"ds002", "ds002", "ds002", "ds002", "ds002", "ds002", "ds002"
)
Hey everyone,
I'm working on a contour plot depicting asymptomatic prevalence at varying
durations of infectiousness and force of infection. I've been able to work
everything out except for this one - my legend title keeps getting cut off.
Here's what I have:
filled.contour(x=seq(2,30,length.ou
Is the primary difference between the current version download (e.g., 2.15.1)
and the "patched" download of these R files that the patched files have NOT
been verified? Please confirm and thanks!
[[alternative HTML version deleted]]
__
R-help
Sorry for any cross messaging. Here are what I've tried and more info. The
error sticks :(
I installed the latest R2.15.1 (64bit) on my machine, per Uwe's comments.
The same error happened. Log file of WinBUGS look perfectly normal:
###
display(log)
check(C:/Jinmodel/test_c
Hi,
I am having trouble installing a previous version of a package, and multiple
version of the package in R 2.12 or 2.15. I have download the tar.gz
packages from the CRAN archive, and created an folder holding all the files.
install.packages("changepoint_0.3.tar.gz",
lib="~/Rtools/dir/of/pkgs/
Hi, Dan:
That's great.
Do you have a package that would be a reasonable home for this
solution? If yes, I would encourage you to add functions similar to
those described by Malcolm Fairbrother. If it were mine, I think I
might prefer to call rdist.earth directly rather than ma
This message from Malcolm Fairbrother at R-sig-ME, who has a potential
solution...
[Begin forwarded message]
I struggled with this a couple years ago, and the best solution I could find
(or at least that I think I found) was to modify corStruct.R, gls.R, and lme.R,
adding a new function "dist2"
You need to use
p[IND] <- .C(stats:::C_pkstwo, length(x[IND]), p = x[IND],
instead of
p[IND] <- .C(C_pkstwo, length(x[IND]), p = x[IND],
--
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Sent from the R help mailing list archive a
Hello,
Try
Fnum <- function(x, beta){
sapply(x, function(x) integrate(f,lower=-x,upper=0,beta=beta)$value)
}
And all results were the same.
Hope this helps,
Rui Barradas
Em 03-10-2012 21:59, Gerrit Draisma escreveu:
Dear R-users,
I want to use the function Fnum below
in another integra
Dear R-users,
I want to use the function Fnum below
in another integrate procedure.
How do I write Fnum so that it returns a vector of values?
And will the last integrate return the right answer?
(I tried Vectorize() in several places,
but got all sorts of errors.)
Thanks for helping out.
Ger
In S+ 8.2 help(options) says
time.zone
a character string specifying the default time zone when none is given in a
time object.
Its default value is "GMT". It is used as the default value of the 'zone'
argument to the
constructors of "timeDate" objects (where it says "time object" it cou
On Oct 3, 2012, at 11:00 AM, Santosh wrote:
> Dear Rxperts,
> Was wondering if there is any function in R similar to
> options("time.zone"): found in S-Plus that can help in looking at the
> default timezone settings..
Many of us have no way to understand questions based on analogies with S. Are
On 03/10/2012 3:14 PM, Jason Love wrote:
Hi all,
Sorry about posting such a basic question, but I can't seem to find out a
way of flipping a column and row of a matrix.
In matlab, this can be easily done by putting a prime next to a variable
name. (e.g., a -> a')
If anyone knows, please help.
t
Do you mean all the rows and columns, or just a row and column as you said?
Your reference to matlab makes me think the former, in which case all
you need is ?t - the transpose function.
Sarah
On Wed, Oct 3, 2012 at 3:14 PM, Jason Love wrote:
> Hi all,
> Sorry about posting such a basic questio
Hi all,
Sorry about posting such a basic question, but I can't seem to find out a
way of flipping a column and row of a matrix.
In matlab, this can be easily done by putting a prime next to a variable
name. (e.g., a -> a')
If anyone knows, please help.
-Jason
[[alternative HTML version del
Well, if I read the error message right, your image is too large. I
think you should explore alternate formats - does the journal accept
figures in a vector format such PS, EPS or PDF? Such figures will be
much easier to handle than a humongous tiff with file size of 60+
megabytes.
HTH,
Peter
I also had a lot of trouble to create the figs exactly as I want then
using R alone.
Now, I generally create a postscript image in R and I use gimp after so
I can easily modify the resolution.
On 10/3/2012 11:56 AM, David Winsemius wrote:
On Oct 3, 2012, at 11:52 AM, David Winsemius wrote:
HI,
You mentioned what you don't want as output.
So, this might be a bit of guesswork.
Try this:
set1<-structure(list(ID = c("ds001", "ds001", "ds001", "ds001", "ds001",
"ds001", "ds001", "ds001", "ds001", "ds001", "ds001", "ds001",
"ds002", "ds002", "ds002", "ds002", "ds002", "ds002", "ds0
On Oct 3, 2012, at 11:52 AM, David Winsemius wrote:
>
> On Oct 3, 2012, at 11:05 AM, Sheppard,Jennifer [Sas] wrote:
>
>> Hi all,
>>
>> I am trying to create images in R suitable for journal publication. I'd
>> like to make an image that is 3.6" wide and 5.08" length, and 1200 dpi.
>> When I c
On Oct 3, 2012, at 11:05 AM, Sheppard,Jennifer [Sas] wrote:
> Hi all,
>
> I am trying to create images in R suitable for journal publication. I'd
> like to make an image that is 3.6" wide and 5.08" length, and 1200 dpi.
> When I create a tiff file that is 800 dpi and 4x4", it works (although
>
Can someone please help with the error message below?
thanks!
Start: AIC=-Inf
value ~ 1 + Core_CPI__ + GDP_change + Unemployment + housing +
interest + S_P + d1 + d2 + d3
Error in if (any(ch)) { : missing value where TRUE/FALSE needed
In addition: Warning message:
attempting model select
Hi all,
I am trying to create images in R suitable for journal publication. I'd
like to make an image that is 3.6" wide and 5.08" length, and 1200 dpi.
When I create a tiff file that is 800 dpi and 4x4", it works (although
doesn't look good).
But when I create a tiff that is the size and dpi I wa
Sys.time()
Regarding changing time zones you may want to search for POSIXct
Best Regards,
Bhupendrasinh Thakre
Sent from my iPhone
On Oct 3, 2012, at 1:00 PM, Santosh wrote:
> Dear Rxperts,
> Was wondering if there is any function in R similar to
> options("time.zone"): found in S-Plus that ca
On 03.10.2012 20:00, Santosh wrote:
Dear Rxperts,
Was wondering if there is any function in R similar to
options("time.zone"): found in S-Plus that can help in looking at the
default timezone settings..
Sys.timezone()
Uwe Ligges
Thanks much,
Santosh
[
[[alternative HTML version
On 03.10.2012 19:48, liang@us.pwc.com wrote:
My stepAIC function works for one set of data but not anotherone set
of data shows the steps of eliminating variables, versus another set of
data doesn't throw away any variables.
Can anyone please explain why?
Without data nor output? No.
On 03.10.2012 19:50, Yakamu Yakamu wrote:
Hi all,
I am making 2 barplots with 3 different bars inside with command :
bar.wdHo<-barplot(wdHo.mean, names=c(""), cex.lab=1.0, cex.axis=1, cex.names=1, ylim=c(0,15), xlab="",
ylab=expression(paste("Thickness (mm"^{2},")")), density=c(0,27,200), col
On 03.10.2012 19:58, liang@us.pwc.com wrote:
See error message below: can someone please help with this? Thanks!
Residuals:
ALL 9 residuals are 0: no residual degrees of freedom!
Residual standard error: NaN on 0 degrees of freedom
Multiple R-squared: 1, Adjusted R-squared: N
Hi,
It sounds to me like you want to change the location of the tick marks
rather than the axis range (which you've already done). For that see
?axis and its various options for placement and labeling and the yaxt
option under ?par to suppress the default axis labels.
Sarah
On Wed, Oct 3, 2012 a
On 02.10.2012 21:55, Lucas Chaparro wrote:
Dear R friends.
After having some troubles learning how to create a ffdf object, now I find
myself having problems saving it.
this is the data i´d like to save:
str(DATA)
List of 3
$ virtual: 'data.frame': 6 obs. of 7 variables:
.. $ VirtualVmode
See error message below: can someone please help with this? Thanks!
Residuals:
ALL 9 residuals are 0: no residual degrees of freedom!
Residual standard error: NaN on 0 degrees of freedom
Multiple R-squared: 1, Adjusted R-squared: NaN
F-statistic: NaN on 8 and 0 DF, p-value: NA
My stepAIC function works for one set of data but not anotherone set
of data shows the steps of eliminating variables, versus another set of
data doesn't throw away any variables.
Can anyone please explain why? Thanks
__
T
The most common case that I see that error is when someone fits their
model using syntax like:
fit <- lm( mydata$y ~ mydata$x )
instead of the preferred method:
fit <- lm( y ~ x, data=mydata )
The fix (if this is what you did and why you are getting the error) is
to not use the first way and in
I have copied this to the R-help list. You only repied to me and it is much
likelier that you will get help if it is posted to the list. In relpying you
should generally use reply all rather than reply in posting.
I still don't quite see what you are trying to get. Most of the ID and reponse
Hi all,
I am making 2 barplots with 3 different bars inside with command :
bar.wdHo<-barplot(wdHo.mean, names=c(""), cex.lab=1.0, cex.axis=1, cex.names=1,
ylim=c(0,15), xlab="", ylab=expression(paste("Thickness (mm"^{2},")")),
density=c(0,27,200), col=c("grey90","black","grey"), beside=TRUE, ax
https://stat.ethz.ch/mailman/listinfo/r-help
On Wed, Oct 3, 2012 at 1:39 PM, tony toca wrote:
>
See below.
> __
> R-help@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.
[[alternative HTML version deleted]]
__
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https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained,
Hello,
Homework? We don't do homework. Why do you want the ks test and not,
say, a chi-squared test? Tips: 1)ks is for contiuous data and 2) who
told you this comes from a poisson population if it doesn't really seem so?
Hope this helps,
Rui Barradas
Em 03-10-2012 05:30, yang ji escreveu:
f
Dear list,
I am running into 2 problems when using the optimize function from the
stats package (note: I've also tried unsuccessfully to use optim,
nlm, & nlminb). The second problem is caused by my solution to the
first, so I am asking if anyone has a better solution to the first
question, or i
Please post this on the r-sig-mixed-models list, not here. You are
waayyy more likely to get useful help there.
Also this is primarily a statistics, not an R issue. You may wish to
consider consulting with your local statistician to help you
understand the statistics.
Cheers,
Bert
On Wed, Oct 3
On 03.10.2012 17:51, yiyiwang wrote:
Dear all
I used R2WinBUGS package's bugs() function to generate MCMC results. Then I
tried to save the simulation draws in R, using read.bugs() function. Here is
a simple test:
##
library(coda)
library(R2WinBUGS)
#fake some data to test
Thanks, both of you, this is really helpful!
Rui, this is a very neat, clear, and effective way to do what I need to do.
It is essentially the same idea that I was trying to do with a for loop,
but instead with a function, obviously. I really appreciate the additional
functions that you taught m
Dear people of the help list
I am drying to analyze my data using the 'lmer' function and I keep having
problems.
This is the model:
> fm1<-lmer(dbh~spec+scheme+(1|Plot),data=d, REML=FALSE).
I analyse tree size (dbh) of 3 different species (spec) and 3 planting
schemes (scheme). I have 5 plo
> I'm new to this and struggling away with ggplot. I need to
> plot some line graphs for about 4 series. I have the values
> to plot and also the value of the standard error of the
> value. Is it possible to plot the standard error bars when
> the value are already calculated as opposed to
This can happen if your newdata data.frame does not include
all the predictors required by the formula in the model. In that
case predict will look in the current evaluation environment to
find the missing predictors, and those will generally not match
what is in your newdata. E.g.,
> x1 <- 1:6
On 03/10/2012 11:07 AM, Hervy Cyril wrote:
My OS is a 64-bit Windows Server 2008 SP2 and I have a sysadmin account on the
server.
Sounds like it's a question for Microsoft (or their web site) then. You
might want to start here:
http://technet.microsoft.com/en-us/library/cc753446.aspx
Dunca
On Oct 3, 2012, at 6:41 AM, James Maas (MED) wrote:
> I'm new to this and struggling away with ggplot. I need to plot some line
> graphs for about 4 series. I have the values to plot and also the value of
> the standard error of the value. Is it possible to plot the standard error
> bars w
Hi:
I was wondering if there is any R package to estimate a two-or three
equation system in a panel setting.
Say, I have 100 firms and their expenditure on wind generated power and
solar-generated power.
S_i = X1_i*b1 + u1_i
W_i = X2_i* b2 + u2_i
(X1 and X2 need not be the same.. but for s
> Most critical issues vis-a-vis open source licenses come into play when you
> cross the line from simply being a user/developer to copying and
> distributing. In the latter case, whether you plan to charge for the
> resultant product or make it available for free, is irrelevant.
I think the m
On 03/10/2012 16:12, Hervy Cyril wrote:
My OS is a 64-bit Windows Server 2008 SP2 and I would like to limit RAM usage
on the server.
Ask your sysadmins, as Duncan Murdoch advised. R only know about
virtual memory usage, not RAM usage.
Thank you.
Best regards
Cyril Hervy
-Message d'
My OS is a 64-bit Windows Server 2008 SP2 and I have a sysadmin account on the
server.
Thank you.
Best regards
Cyril Hervy
-Message d'origine-
De : Duncan Murdoch [mailto:murdoch.dun...@gmail.com]
Envoyé : mercredi 3 octobre 2012 15:39
À : Hervy Cyril
Cc : R-help (r-help@r-project.org
I am very new to R and I basically used SPSS to do my model selection, which
I had used generalized linear model.
So my best model is P= D + T + L + T*L and there is a parameters table from
the SPSS output which I suppose I have to use the coefficients (column B) in
the table (as attached) when I
My OS is a 64-bit Windows Server 2008 SP2 and I would like to limit RAM usage
on the server.
Thank you.
Best regards
Cyril Hervy
-Message d'origine-
De : Prof Brian Ripley [mailto:rip...@stats.ox.ac.uk]
Envoyé : mercredi 3 octobre 2012 15:43
À : Hervy Cyril
Cc : R-help (r-help@r-proje
I'm new to this and struggling away with ggplot. I need to plot some line
graphs for about 4 series. I have the values to plot and also the value of the
standard error of the value. Is it possible to plot the standard error bars
when the value are already calculated as opposed to letting R d
Hi! I'm trying to debug the cosmo R package because I'm trying to find out
where all the motifs are.
I display some of them printing the "motif" variable but I don't know how
to show all of the found motifs in one run.
http://www.bioconductor.org/packages/2.10/bioc/html/cosmo.html
I think that th
> Of course I can extend the new dataframe with a few thousands
> NAs, but is there a more elegant solution?
That should not be necessary: predict.lm should work on any number of newdata
rows, whether longer or shorter than the original data set.
However, the help page for predict.lm says (among
On Oct 3, 2012, at 9:56 AM, Spencer Graves
wrote:
> On 10/3/2012 7:26 AM, Marc Schwartz wrote:
>> On Oct 3, 2012, at 4:49 AM, Narendra wrote:
>>
>>> Hi,
>>>
>>> I have developed one application using ggmap package.It is based on google
>>> map.
>>> I am a bit confused regarding its licensing
On 10/3/2012 7:26 AM, Marc Schwartz wrote:
On Oct 3, 2012, at 4:49 AM, Narendra wrote:
Hi,
I have developed one application using ggmap package.It is based on google
map.
I am a bit confused regarding its licensing terms.I want to know that can i
use it with my other applications.
Is it legal
Hi everybody,
recently a member of the community pointed me to the useful predict.lm()
comment. While I was toying with it, I stumbled across the following
problem.
I do the regression with data from five years. But I want to do a prediction
with predict.lm for only one year. Thus my dataframe f
On Oct 3, 2012, at 4:49 AM, Narendra wrote:
> Hi,
>
> I have developed one application using ggmap package.It is based on google
> map.
> I am a bit confused regarding its licensing terms.I want to know that can i
> use it with my other applications.
> Is it legal?
In the case of a third part
On Wed, 2012-10-03 at 12:09 +0100, Simon Wood wrote:
> If b is a fitted gam object...
>plot(b,all.terms=TRUE)
> --- see ?plot.gam
Many thanks for your answer! But the problem is not as simple. My model
has one te(), and two parametric interactions: two numeric variables
whose effects are changi
Hi,
Have you read the documentation for merge? The relevant section says
" If 'all.x' is true, all the non matching cases of 'x' are appended
to the result as well, with 'NA' filled in the corresponding
columns of 'y'; analogously for 'all.y'."
Please do get in the habit of reading
On 03/10/2012 5:12 AM, Hervy Cyril wrote:
Hello,
In our structure, users connect to a server (64GB of memory) where they launch
R. How can I limit the amount of RAM that could use a user.
The function memory.limit(size=...) can limit the amount of memory but I would
like users can't change this
And your OS is? See the footer and the 'at a minimum' information the
posting guide asks for.
I think you are confusing 'memory' and 'RAM': the two concepts are distinct.
But R is not a special case, and you do it the same way as you do this
for any other process, by your OS facilities.
On
Hello,
I'm glad it helped.
Now you have what is a data structure problem. The computations are the
same but in a different output.
First of all a terminology issue. In R the correct names for the data
structures you've refered to are 'list', 'matrix' and 'array'. To make
it short,
vector -
I have two macs both running OS 10.6.8. One has JGR 1.7-9 and the other
1.7-11. When I run 'descriptives' from the analysis menu on the same data
set on both machines. It runs as expected on 1.7-9 but give the error
message in the header in version 1.7-11. Other analysis procedures seem to
run
Please show the data set...
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h
Hi...
I have one 2 data set with 3 variables and 4 observations. I want to combine
the two data sets. I tried with merge but it gives only the common values. I
need common values and and remaining values also. Please help me?
this is my data set
dataset:1
nameva1 va2
AA 10 100
BB
I had the same problem by trying to install the mgcv package. The problem
came from the Matrix package
library(Matrix)
=> same error as yours
I have reinstalled the Matrix package, now everything work fines
best
chris
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Hello,
In our structure, users connect to a server (64GB of memory) where they launch
R. How can I limit the amount of RAM that could use a user.
The function memory.limit(size=...) can limit the amount of memory but I would
like users can't change this option in R. Is it possible?
Thank you.
Cy
Thank you very much for your suggestions. They both worked!
Actually I am trying to make an array of length 7, where each array
contains a different number of 2 by 2 matrices. The vector "n" defines the
different number of matrices across the arrays. Therefore, the parameter
"l" has to change in e
Dear list,
I am trying to impute the missing values for the first level variables in a two
level data set using MICE package. Here is my code and error I got:
> aa=mice(a,maxit=0)
> aaa=aa$pred
> aaa
V1 V2 V3 V4 V5 V6 V7 V8 V9 V10
V1 0 0 0 0 0 0 0 0 0 0
V2 0 0 0 0 0 0 0
Hi,
I have developed one application using ggmap package.It is based on google
map.
I am a bit confused regarding its licensing terms.I want to know that can i
use it with my other applications.
Is it legal?
--
With Regards,
Narendra Pratap
Principal Research Developer
Hitech Robotic Systemz Lt
1. Not sure what you want. What "details" are you looking for exactly? If
you call predict(trainset) without the newdata argument, you will get the
(out-of-bag) prediction of the training set, which is exactly the "predicted"
component of the RF object.
2. If you set type="votes" and norm.v
Thank you so much for the advice, the cordless trackball has made a world of
difference, as well as the streches and the R package that tells you one
take a break.
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Sent from the R help m
Hi all,
I am using Ubuntu and I am having quite a bit of difficulty trying to
get R to use the system proxy settings. Any suggestions?
Thanks,
Sachin
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PLEASE do read the p
On 12-10-03 1:59 AM, ishi soichi wrote:
platform x86_64-apple-darwin9.8.0
arch x86_64
os darwin9.8.0
system x86_64, darwin9.8.0
version.string R version 2.13.1 (2011-07-08)
I am trying to write a function that takes a few objects as input.
test <- function(di
This is a wrapper around gnm by Turner and Firth to make fitting
log-multiplicative models as convenient as possible: it provides simple
functions, good starting values, jackknife or bootstrap standard errors,
and direct plotting of the results.
In addition, it makes it possible to identify scores
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