Re: [R] trellis margin sizes in absolute units

2012-07-12 Thread Deepayan Sarkar
On Thu, Jul 12, 2012 at 9:39 PM, Martin Ivanov wrote: > Dear R users, > > I have a lot of experience with traditional R graphics, but I decided to turn > to trellis as > it was recommended for spatial graphs by the sp package. In traditional R > graphics > I always first set the size of the dev

Re: [R] Side by side strip charts

2012-07-12 Thread peter dalgaard
On Jul 13, 2012, at 08:18 , darnold wrote: > Hi, > > I'm looking for some ideas on how to reproduce the attached image in R. > There are three samples, each of size n = 10. The first is drawn from a > normal distribution with mean 60 and standard deviation 3. The second is > drawn from a normal

[R] tck = 0 for the colorkey?

2012-07-12 Thread Martin Ivanov
Dear R users, I am struggling with the colorkey on a levelplot lattice graphic. I want that no ticks are printed on the colorkey. That is, I want their size tck=0. Merely setting tck=0 t in the colorkey parameter does not work. Setting it in the lattice.par.set() removes the ticks from the leve

Re: [R] Side by side strip charts

2012-07-12 Thread Gerrit Eichner
Hi, Arnold, looking at the example section of ?stripchart may help you. Hth -- Gerrit On Thu, 12 Jul 2012, darnold wrote: Hi, I'm looking for some ideas on how to reproduce the attached image in R. There are three samples, each of size n = 10. The first is drawn from a normal distributi

[R] Side by side strip charts

2012-07-12 Thread darnold
Hi, I'm looking for some ideas on how to reproduce the attached image in R. There are three samples, each of size n = 10. The first is drawn from a normal distribution with mean 60 and standard deviation 3. The second is drawn from a normal distribution with mean 65 and standard deviation 3. The t

Re: [R] how to add a variable to a graph title

2012-07-12 Thread Michael Weylandt
plot(1:5, main = paste0("Figure 1: x=", x)) Michael On Jul 12, 2012, at 3:30 PM, JeffND wrote: > Hi folks, > > To simplify my question, consider an example: > > x=runif(1,0,1) > plot(1:5,1:5) > > Now I want to add a title to the above plot showing the vaue of x, so if the > generated x is 0.

[R] Vuong test

2012-07-12 Thread sanchez ana
Dear All, I am using the function vuong from pscl package to compare 2 non nested models NB1 (negative binomial I ) and Zero-inflated model. NB1 <-  glm(, , family = quasipoisson), it is an object of class: "glm" "lm" zinb <- zeroinfl( dist = "negbin") is an object of class: "zeroinfl"   when a

Re: [R] read.table with numeric row names

2012-07-12 Thread Chi Zhang
Thanks. It works very good. Chi On Thu, Jul 12, 2012 at 7:27 PM, arun wrote: > Hello, > > I saw your reply in nabble. Sorry about that. I thought the dataset had > only few columns. > > #You can read first line of a file using: > readLines("foo.txt",n=1)[1] > > > #The more generic colname subs

Re: [R] read.table with numeric row names

2012-07-12 Thread arun
Hello, I saw your reply in nabble.  Sorry about that.  I thought the dataset had only few columns. #You can read first line of a file using: readLines("foo.txt",n=1)[1] #The more generic colname substitution dat1<-read.table(text="  2.5  3.6  7.1  7.9  100  3  4  2    3  200  3.1  4

Re: [R] plot graph by first letter

2012-07-12 Thread imnew
Hi, for my dataset is actually retrieve from a access file not a textfile.thanks Date: Thu, 12 Jul 2012 11:58:30 -0700 From: ml-node+s789695n4636343...@n4.nabble.com To: jubil...@live.com.sg Subject: Re: plot graph by first letter Hi, Try this: dat1<-read.table(text=" Name

[R] How to simulate the relationship of vegetation and groundwater in Minqin Oasis, Gansu Province, China

2012-07-12 Thread dasea see
*Dear **Madam**/**Sir,* *What would happen if we irrigate the degraded land using the desalinated saline water in Minqin Oasis, Gansu Province, China? Can we prevent the disappearing of Minqin Qasis?* * * *Background:* *1. **The Minqin Oasis is surrounded by two dese

[R] R2OpenBUGS quesion

2012-07-12 Thread elong zhang
Dear All: Could anybody help me figure out why I get the Error message below while I running the example code of bugs() function in R2OpenBUGS packages? I have tried the code both in Win 7 and Ubuntu 12.04, but they show the same message. My R version is 2.15.1 in win7 and 2.15.0 in Ubuntu. Many

Re: [R] read.table with numeric row names

2012-07-12 Thread kexinz
Thanks Yasir, this helps a lot. BTW, is there an R command to read just the first line of the file? Yasir Kaheil wrote > > just do this: > colnames(r)<-substr(colnames(r),2,nchar(colnames(r))) > > This will remove the X. > Later when you want to use the headed to plot something, cast it as > n

Re: [R] read.table with numeric row names

2012-07-12 Thread kexinz
Thanks, but I don't want to specify the column names by hand, since I have a lot of similar files. arun kirshna wrote > > Hi, > > Try this: > > dat1<-read.table(text=" >  2.5  3.6  7.1  7.9 >  100  3  4  2    3 >  200  3.1  4  3  3 >  300  2.2  3.3  2    4 >  ",sep="",header=TR

Re: [R] remove loop which compares row i to row i-1

2012-07-12 Thread jcrosbie
I'm sorry but I see to be getting an error.  > data.tmp <- aggregate(MyTo ~ Date + Hour, data = tUnitsort[, cols], max) > Error in `[.default`(xj, i) : invalid subscript type 'builtin' From: Rui Barradas [via R] To: jcrosbie Sent: Thursday, July 12, 2012

Re: [R] Two R sessions on multicore computer seem to inhibit each other ?

2012-07-12 Thread Taylor, Z Todd
My first guess would be there's not enough memory on the machine to support two of the tasks you're running, so swapping ensues. --Todd -- Why is it so hard to remember the spelling of "mnemonic"? -Original Message- From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.or

Re: [R] Cox proportional hazard model and coefficients

2012-07-12 Thread R-girl
This is additional to the post above (which I forgot to write): What I mean with "How to interpret the coefficients as they are very large numbers" is that it seems to be a bit ridiculous to think that survival is e.g. 8.815e+34 (hazard ration taken from the interaction LT:Food:Temp2) times lower

[R] how to add a variable to a graph title

2012-07-12 Thread JeffND
Hi folks, To simplify my question, consider an example: x=runif(1,0,1) plot(1:5,1:5) Now I want to add a title to the above plot showing the vaue of x, so if the generated x is 0.3, graphically the tile should be like "Figure 1: x=0.3". How do I achieve this in R? Thanks. Jeff -- View this me

Re: [R] -1.1 - 0.1 + 1.2 is NOT null! Why?

2012-07-12 Thread Erdal Karaca
I was just trying to say that Ole might know the technical difference between "NULL" and "ZERO", but it seemed to be rather a linguistic confusion... BTW. the subject contains "null", but the body of the mail correctly states "zero" :-) 2012/7/12 Patrick Connolly > On Tue, 10-Jul-2012 at 11:19P

[R] Cox proportional hazard model and coefficients

2012-07-12 Thread R-girl
Hi, Here is the summary-output of the Coxph-model I used (the output is based on the best final model i.e. all significant explanatory variables and their interactions are included): coxph(formula = Y ~ LT + Food + Temp2 + LT:Food + LT:Temp2 + Food:Temp2 + LT:Food:Temp2) n= 555

Re: [R] Accessing coefficient values in linear regression

2012-07-12 Thread Peter Alspach
Tena koe Pragya It is advisable to use the extractor functions where they are available; i.e., coef(j) and coef(j)[1] or coef(j)['(Intercept)'] for the intercept. However, j$coefficients["(Intercept)"] does give you what I suspect you want. Check its structure: str(j$coefficients["(Intercept)"

[R] Accessing coefficient values in linear regression

2012-07-12 Thread PRAGYA SUR
Hi everyone, I am fitting a simple linear regression model in R. My command is j=lm( Y ~ Sex + begsal + time + int) Call: lm(formula = Y ~ Sex + begsal + time + int) Coefficients: (Intercept) Sex begsal time int 191.916 -241.8053.96

Re: [R] Two R sessions on multicore computer seem to inhibit each other ?

2012-07-12 Thread Jim Holtman
what would be nice is to understand the amount of cpu time vs. the elapsed time consumed. you might be paging if you don't have sufficient real memory. I would venture a guess that the cpu time is very similar and the differnce is elapsed time due to some contention like memory. Sent from my

Re: [R] Adjusting format of boxplot

2012-07-12 Thread Peter Ehlers
And I guess I would also either leave out the vertical axis line or add box(bty="l") after the axis(1, ) call. Peter Ehlers On 2012-07-12 19:48, Peter Ehlers wrote: On 2012-07-12 18:39, David L Carlson wrote: Sorry about that. I got rid of the box another way and then switched to using pa

Re: [R] Adjusting format of boxplot

2012-07-12 Thread Peter Ehlers
On 2012-07-12 18:39, David L Carlson wrote: Sorry about that. I got rid of the box another way and then switched to using pars= without making sure it worked. This works: flies$group <- factor(flies$group, 5:1) # 1 levels(flies$group) <- paste0("Group ", 5:1) # 2 oldpar <- par(bty="n") boxplot

Re: [R] Adjusting format of boxplot

2012-07-12 Thread David L Carlson
Sorry about that. I got rid of the box another way and then switched to using pars= without making sure it worked. This works: flies$group <- factor(flies$group, 5:1) # 1 levels(flies$group) <- paste0("Group ", 5:1) # 2 oldpar <- par(bty="n") boxplot(long ~ group, data = flies,

Re: [R] Adjusting format of boxplot

2012-07-12 Thread darnold
Added your code: flies <- read.table("example12_1.dat",header=TRUE,sep="\t") flies$group <- factor(flies$group,5:1) levels(flies$group) <- paste0("Group ",5:1) boxplot(long ~ group, data = flies, pars = list(las=1, ylim=c(10,110), xaxt="n", bty="n"), horizontal = TRUE,

Re: [R] Adjusting format of boxplot

2012-07-12 Thread David L Carlson
If you read the posting guide you will see that only a few types of attachments will be allowed through. Also it is much preferred to paste data into your email using dput: > dput(flies) structure(list(long = c(40L, 37L, 44L, 47L, 47L, 47L, 68L, 47L, 54L, 61L, 71L, 75L, 89L, 58L, 59L, 62L, 79L

Re: [R] Adjusting format of boxplot

2012-07-12 Thread darnold
Looks like data was not attached. Here is is. longgroup 40 1 37 1 44 1 47 1 47 1 47 1 68 1 47 1 54 1 61 1 71 1 75 1 89 1 58 1 59 1 62 1 79 1 96 1 58 1 62 1 70 1 72 1 74 1 96

Re: [R] Plotting rpart trees with long list of class members

2012-07-12 Thread Jean V Adams
The example you gave had only one split. If your real situation has three splits, you'll have to take a look at testtree$csplit matrix and decide how you want to define the new grouping variable. Here's one way to do it ... Jean library(rpart) library(rpart.plot) test_set <- data.frame(

[R] Adjusting format of boxplot

2012-07-12 Thread David Arnold
Hi, I managed to use the attached data set and figure out the following: flies <- read.table("example12_1.dat",header=TRUE,sep="\t") boxplot(long ~ group, data = flies, horizontal = TRUE, col = "red") I'm very new to R and would like some help with the following: 1. Chan

Re: [R] remove loop which compares row i to row i-1

2012-07-12 Thread Rui Barradas
Hello, I've not been following this thread but this seems ndependent from previous posts. Try the following. url <- "http://r.789695.n4.nabble.com/file/n4636337/BR3_2011_New.csv"; tUnitsort <- read.csv(url, header=TRUE) cols <- sapply(c("Date", "Hour", "BlockNumber", "MyTo"), function(x)

Re: [R] Predicted values when using offset in ZIP GLM

2012-07-12 Thread Achim Zeileis
On Thu, 12 Jul 2012, Lee, Laura wrote: Hi all! I have built a model to predict interactions with turtles and the model includes an offset for effort: ZIP<-zeroinfl(Sturgeon~fMesh+fSeason+offset(LogEffort),dist="poisson",link="logit",data=data) Note that this includes the offset both in the

Re: [R] Grabbing Indexes of a certain standard deviation

2012-07-12 Thread Jean V Adams
I wrote a little function called first() to help with situations like this. It returns a 1 every time an element of a vector is different from the previous element, and a 0 otherwise. first <- function(x) { L <- length(x) c(1, 1-(x[-1]==x[-L])) } sd <- 1 residuals <- c(1, 2.1, 3, 4

[R] How to find frequent sequences.

2012-07-12 Thread Vineet Shukla
I have independent event sequences for example as follows : Independent event sequence 1 : A , B , C , D Independent event sequence 2 : A, C , B Independent event sequence 3 :D, A, B, X,Y, Z Independent event sequence 4 :C,A,A,B Independent event sequence 5 :B,A,D I want to able to find

Re: [R] nls question

2012-07-12 Thread Felipe Carrillo
Thank you all for your help. Felipe D. Carrillo Supervisory Fishery Biologist Department of the Interior US Fish & Wildlife Service California, USA http://www.fws.gov/redbluff/rbdd_jsmp.aspx > >From: Gabor Grothendieck >To: Felipe Carrillo >Cc: "r-help@r-proj

Re: [R] lars package to do lasso

2012-07-12 Thread Bert Gunter
If you don't understand the methodology, why are you using it?? Use the glmnet package instead and read the supporting documents. If it's too technical for you, consult a statistician or do something else. I do NOT do brain surgery. -- Bert On Thu, Jul 12, 2012 at 1:04 PM, SHIR SHIRY wrote: >

[R] lars package to do lasso

2012-07-12 Thread SHIR SHIRY
Dear all I am using lars package to do lasso in R. I dont undesrtand what max.steps do?and how I can understand from the outputs to obtain the last steps in this packagethanks for your helpbest [[alternative HTML version deleted]] __ R-help@r-

Re: [R] Two R sessions on multicore computer seem to inhibit each other ?

2012-07-12 Thread Ulrike Grömping
P.S.: I should have mentioned: The operating system is Windows XP. -- View this message in context: http://r.789695.n4.nabble.com/Two-R-sessions-on-multicore-computer-seem-to-inhibit-each-other-tp4636336p4636355.html Sent from the R help mailing list archive at Nabble.com. __

Re: [R] read.table with numeric row names

2012-07-12 Thread Yasir Kaheil
just do this: colnames(r)<-substr(colnames(r),2,nchar(colnames(r))) This will remove the X. Later when you want to use the headed to plot something, cast it as numeric: plot(colMeans(r)~as.numeric(colnames(r))) - Yasir Kaheil -- View this message in context: http://r.789695.n4.nabble.com/re

Re: [R] nls question

2012-07-12 Thread Bert Gunter
To add to Gabor's remarks: This has nothing to do per se with R -- it is your insufficient understanding of the underlying mathematical issues. It is pretty trivial to do the plinear algorithm by hand. Fit linear regressions weight ~ lm(weight ~z) where z is exp(gamma*week) for a suitable sequen

Re: [R] Questions about doing analysis based on time

2012-07-12 Thread APOCooter
Another new question: I want to be able to subset the data based on whether or not that data point was recorded on a holiday. The is.holiday() function from the chron package would be perfect for this. However, when I try it, the following happens (I'm also using the timeDate package): > holida

Re: [R] read.table with numeric row names

2012-07-12 Thread arun
Hi, Try this: dat1<-read.table(text="  2.5  3.6  7.1  7.9  100  3  4  2    3  200  3.1  4  3  3  300  2.2  3.3  2    4  ",sep="",header=TRUE) #Either colnames(dat1)<-c("2.5","3.6","7.1","7.9") #or colnames(dat1)<-c(2.5,3.6,7.1,7.9) #produce character column names  is.character

[R] Predicted values when using offset in ZIP GLM

2012-07-12 Thread Lee, Laura
Hi all! I have built a model to predict interactions with turtles and the model includes an offset for effort: ZIP<-zeroinfl(Sturgeon~fMesh+fSeason+offset(LogEffort),dist="poisson",link="logit",data=data) I wasn't clear about one aspect of the response to a similar question I recently posted..

Re: [R] -1.1 - 0.1 + 1.2 is NOT null! Why?

2012-07-12 Thread Patrick Connolly
On Tue, 10-Jul-2012 at 11:19PM +0200, Erdal Karaca wrote: |> german "Null" == english "zero" :-) German "Gift" == English "poison" :-( |> |> 2012/7/10 Rolf Turner |> |> > |> > |> > In addition to taking cognisance of Richard Heiberger's reply you |> > should also learn to distinguish b

Re: [R] nls question

2012-07-12 Thread Gabor Grothendieck
On Thu, Jul 12, 2012 at 3:40 PM, Felipe Carrillo wrote: > I get a different error now: >> nls(weight ~ cbind(1, exp(gamma*week)), weightData, start = list(gamma= >> 0.2), alg = "plinear") > Error in nls(weight ~ cbind(1, exp(gamma * week)), weightData, start = > list(gamma = 0.2), : > step fac

Re: [R] nls question

2012-07-12 Thread Felipe Carrillo
I get a different error now: >  nls(weight ~ cbind(1, exp(gamma*week)), weightData, start = list(gamma= >0.2), alg = "plinear") Error in nls(weight ~ cbind(1, exp(gamma * week)), weightData, start = list(gamma = 0.2),  :   step factor 0.000488281 reduced below 'minFactor' of 0.000976562 The help

Re: [R] nls question

2012-07-12 Thread Gabor Grothendieck
On Thu, Jul 12, 2012 at 3:02 PM, Felipe Carrillo wrote: > Thanks Bert, I increased the number of iterations: > > M_model <- nls(weight ~ alpha + > beta*exp(gamma*week),control=nls.control(maxiter=200), weightData, > start = c(alpha = 0.0, beta = 1, gamma = 0.2), trace = TRUE) > > Bu

Re: [R] Caret: Use timingSamps leads to error

2012-07-12 Thread Max Kuhn
I can reproduce the errors. I'll take a look. Thanks, Max On Thu, Jul 12, 2012 at 5:24 AM, Dominik Bruhn wrote: > I want to use the caret package and found out about the timingSamps > obtion to obtain the time which is needed to predict results. But, as > soon as I set a value for this option,

Re: [R] nls question

2012-07-12 Thread Felipe Carrillo
Thanks Bert, I increased the  number of iterations:   M_model <- nls(weight ~ alpha + beta*exp(gamma*week),control=nls.control(maxiter=200), weightData, start = c(alpha = 0.0, beta = 1, gamma = 0.2), trace = TRUE)   But now the 'start' argument seems to be the problem. Looking at the

Re: [R] How to get all list item to one string variable

2012-07-12 Thread arun
HI, Much more simplified code that my previous one.  a<-list("abc","def","ghi", "jkl", "mno", "pqr")  paste(a[],sep=" ") [1] "abc" "def" "ghi" "jkl" "mno" "pqr" A.K. - Original Message - From: purushothaman To: r-help@r-project.org Cc: Sent: Thursday, July 12, 2012 8:22 AM Subject:

[R] read.table with numeric row names

2012-07-12 Thread kexinz
I have a text file like this 2.5 3.6 7.1 7.9 100 3 4 2 3 200 3.1 4 3 3 300 2.2 3.3 2 4 I used "r <- read.table("a.txt", header=T)" The row names becomes X2.5, X3.6... What I need is the row names are numeric, so I can use the row names as number

Re: [R] remove loop which compares row i to row i-1

2012-07-12 Thread jcrosbie
Thank you, I am sorry but I am still trying to figure out how to make the function work. I have a column called tUnitsort$BlockNumber which can range from 0 to 6. I have another two columns with the date and the hour ending for the given day. Example DateHour BlockNumber MyTo New

[R] Enforcing inequality bounds and heteroscedasticity in a GAM or GLM

2012-07-12 Thread Ateljevich, Eli
I have a spatial salinity field s and a model g(s) ~ Xb where the X comes from slightly modified GAM basis functions. I am trying to deal with the following set of requirements: 1. The underlying physics are linear, and plain salinity (the identity link) is the correct response to my covariates.

Re: [R] igraph function "graph.bfs" unavailable

2012-07-12 Thread David Marx
Hi Gabor, I updated my RStudio installation to 0.96.316 (which did not modify my R build of 2.14.0) and that did it. Thanks for the help! David Marx Please note our office has moved: David Marx | Data Analyst Specialist, Claims Dept | SoundExchange, Inc. 733 10th Street, NW | 10th Floor | Was

Re: [R] unable to subtract dates in R

2012-07-12 Thread arun
Hi William, Glad to know that. So, I guess "difftime()" did the trick if both befong to the class "Date". A.K. From: William Mabe To: arun Sent: Thursday, July 12, 2012 1:12 PM Subject: Re: [R] unable to subtract dates in R Thanks Arun! That worked. On

[R] HAR-RV-CJ Moedel

2012-07-12 Thread cursethiscure
I am trying to write a loop to forecast realized volatility over successive days for the purpose of VaR prediction using the HAR-RV-CJ model which is as follows: log(RV_t+1) = β_0 + β_CD log(CV_t) + β_CW log(CV_t-5) + β_CM log(CV_t-22) + β_JD log(J_t + 1) + β_JW log(J_t-5 + 1) + β_JM log(J_t-2

[R] Grabbing Indexes of a certain standard deviation

2012-07-12 Thread gcm
I have a graph of residuals and I am attempting to get a list of the indexes of each time the residual is greater than 2 standard deviations or less than -2 standard deviations, but only the first point of the section. And then I'd also need the first point where the point returns to the range betw

[R] Writing HAR-RV-CJ Model?

2012-07-12 Thread cursethiscure
I am trying to write a loop to forecast realized volatility over successive days for the purpose of VaR prediction using the HAR-RV-CJ model which is as follows: log(RV_t+1) = β_0 + β_CD log(CV_t) + β_CW log(CV_t-5) + β_CM log(CV_t-22) + β_JD log(J_t) + β_JW J_t-5 + β_JM J_t-22 + e_t where RV

Re: [R] plot graph by first letter

2012-07-12 Thread arun
Hi, Try this: dat1<-read.table(text="  Name  Age  Angel    20  Amelia  20  Bernard  19  Stephanie  20  Vanessa  22  Angeline  23  Camel  21  ",sep="",header=T

Re: [R] Modifying the design matrix X in GAMS to suit data assimilation

2012-07-12 Thread esatel
Thanks Simon! I can use the functional approach to bridge the gap between this and more traditional forms of data assimilation. At the moment, though, what I am doing is related to your work with soap films, in which your response comes from linearly combine solutions of a PDE evaluated at the po

[R] "duplicate couples (time-id)" Problem

2012-07-12 Thread Saint
Hi! Would be grateful if somebody helped me understand this error message after trying to run a panel data: PanelData <- read.xls("/Users/Bahman/Desktop/Taylor rule/Data/PanelData2.xls") attach(PanelData) # Panel Data regresson for all countrys. > Answer <- plm(NOM.INT.RATE ~ INFL + TARGET.INF

[R] SVAR Restriction on AB-model

2012-07-12 Thread vero_acurio
Hello! I'm doing a svar and when I make the estimation the next error message appears: In SVAR(x, Amat = amat, Bmat = bmat, start = NULL, max.iter = 1000, : The AB-model is just identified. No test possible. Could you help me to interpret it please. Also I have the identification assumption

[R] Two R sessions on multicore computer seem to inhibit each other ?

2012-07-12 Thread Ulrike Grömping
Dear R-helpers, I am puzzled by the following observation: On my home dual core Windows desktop computer, I am used to running two R sessions in parallel. These do very well in using the full CPU of the computer (half each) and don't seem to slow each other down. Today I have started some large

[R] permutation test on paired samples

2012-07-12 Thread Holger Taschenberger
Hi, I'm trying to run a permutation test on paired samples. First I tried the package "exactRankTests": require("exactRankTests") x <- c(1.83,0.50,1.62,2.48,1.68,1.88,1.55,3.06,1.30) y <- c(0.878,0.647,0.598,2.05,1.06,1.29,1.06,3.14,1.29) wilcox.test(x,y,paired = TRUE,alternative = "gre

Re: [R] How to Read source code of function as string vector or matrix

2012-07-12 Thread jim holtman
try this: > readcsv<-function(filepath) + { + output<-read.csv(filepath) + } > readcsv function(filepath) { output<-read.csv(filepath) } > x <- capture.output(readcsv) > x [1] "function(filepath)" "{" "output<-read.csv(filepath)" [4] "}" > On Thu, Jul 12, 2012 at 5:00 AM, purushothaman

Re: [R] nls question

2012-07-12 Thread Bert Gunter
Read the Help file! ?nls ## Note the "control" argument ?nls.control -- Bert On Thu, Jul 12, 2012 at 10:47 AM, Felipe Carrillo wrote: > Hi: > Using nls how can I increase the numbers of iterations to go beyond 50. > I just want to be able to predict for the last two weeks of the year. > Thi

Re: [R] nls question

2012-07-12 Thread Prof Brian Ripley
See ?nls.control (referenced from ?nls). On 12/07/2012 18:47, Felipe Carrillo wrote: Hi: Using nls how can I increase the numbers of iterations to go beyond 50. I just want to be able to predict for the last two weeks of the year. This is what I have: weight_random <- runif(50,1,24)

[R] nls question

2012-07-12 Thread Felipe Carrillo
 Hi:  Using nls how can I increase the numbers of iterations to go beyond 50.  I just want to be able to predict for the last two weeks of the year.  This is what I have:  weight_random <- runif(50,1,24)  weight <- sort(weight_random);weight weightData <- data.frame(weight,week=1:50)  

Re: [R] Computing inverse cdf (quantile function) from a KDE

2012-07-12 Thread Greg Snow
If you are going to be doing a lot of this then you might want to consider using logspline density estimates (logspline package) instead of kernel density estimates. On Wed, Jul 11, 2012 at 8:33 AM, firdaus.janoos wrote: > Hello, > > I wanted to know if there is a simple way of getting the invers

Re: [R] How to add marker in Stacked bar plot?

2012-07-12 Thread Greg Snow
If you want something other than an arrow (or an arrow that looks different from those produced by the arrows function) then look at the my.symbols function in the TeachingDemos package. On Mon, Jul 9, 2012 at 9:37 PM, Manish Gupta wrote: > Hi, > I am working on stacked bar plot and want to add m

Re: [R] How to use external image with R plot?

2012-07-12 Thread Greg Snow
You can use the locator function to retrieve the user coordinates of a point that you click on in the plot, then use those points with rasterImage to add the image. So replace the last 2 lines of Michael's answer with something like: > barplot(VADeaths, border = "dark blue") > tmp <- locator(1) >

Re: [R] trellis margin sizes in absolute units

2012-07-12 Thread Bert Gunter
It is not clear to me what you want in the lattice context, but perhaps ?print.trellis may be relevant. Note that "inner" and "outer" margins are not directly translatable in lattice, as there are multiple levels of plots involved, all determined by viewport contexts. Ergo my confusion about wh

[R] trellis margin sizes in absolute units

2012-07-12 Thread Martin Ivanov
Dear R users, I have a lot of experience with traditional R graphics, but I decided to turn to trellis as it was recommended for spatial graphs by the sp package. In traditional R graphics I always first set the size of the device region absolute units (e.g. mm) and then I firmly fix the inne

Re: [R] igraph function "graph.bfs" unavailable

2012-07-12 Thread Gábor Csárdi
Hi David, please make sure that you have the 0.6 version of igraph installed. You might need to upgrade your R installation to install the 0.6 version of igraph. Best, Gabor On Wed, Jul 11, 2012 at 10:36 AM, David Marx wrote: > Hi, > > I've installed the igraph package and have been otherwise u

Re: [R] easy way to fit saturated model in sem package?

2012-07-12 Thread Rui Barradas
Hello, There's a package, lavaan, that implements FIML as an option of function sem(). I have never used it, though, so I can't say much about it. Hope this helps, Rui Barradas Em 12-07-2012 16:20, John Fox escreveu: Dear Joshua, If I understand correctly what you want to do, the sem packa

Re: [R] easy way to fit saturated model in sem package?

2012-07-12 Thread John Fox
Dear Joshua, If I understand correctly what you want to do, the sem package won't do it. That is, the sem() function won't do what often is called FIML estimation for models with missing data. I've been thinking about implementing this feature, and don't think that it would be too difficult, but I

Re: [R] How to Read source code of function as string vector or matrix

2012-07-12 Thread Michael Weylandt
?deparse And please include context -- relatively few of us use Nabble. Michael On Jul 12, 2012, at 4:16 AM, purushothaman wrote: > Hi, > > readLines read a file and retrun as vector. > > i need to read particular function in Rfile. > > Thanks > B.Purushothaman > > -- > View this message i

Re: [R] is it possible to insert a figure into into another new figure by r script

2012-07-12 Thread Greg Snow
You could read the .png (or some other formats) in then use the rasterImage function to put that into the current plot. On Mon, Jul 9, 2012 at 8:25 PM, Jie Tang wrote: > hi R-users >Now I have a figure in emf or png or tiff format that have been drawn > by other tool and I want to insert thi

Re: [R] Passing Multiple Variable Into SQLDF Statement as parameters of function

2012-07-12 Thread Gabor Grothendieck
On Thu, Jul 12, 2012 at 9:41 AM, scstrein wrote: > Thanks! For some reason, example 5 in that documentation doesn't work for me. > It runs the query, but I'm getting zero results. If I substitute the > variable with the actual value, I do get the results I want. Is there a > reason for this? Re

Re: [R] plot only a same variable timing graph

2012-07-12 Thread John Kane
?subset John Kane Kingston ON Canada > -Original Message- > From: jubil...@live.com.sg > Sent: Wed, 11 Jul 2012 20:53:51 -0700 (PDT) > To: r-help@r-project.org > Subject: [R] plot only a same variable timing graph > > hi all. > for example : > > Table 1 variable: > BERTH TIME

Re: [R] plot graph by first letter

2012-07-12 Thread John Kane
I really am not sure of the question but perhaps ?order for a start? John Kane Kingston ON Canada > -Original Message- > From: jubil...@live.com.sg > Sent: Thu, 12 Jul 2012 01:15:26 -0700 (PDT) > To: r-help@r-project.org > Subject: [R] plot graph by first letter > > Hi all, may i know i

Re: [R] A simple simulation question

2012-07-12 Thread John Kane
I think that you have the statements out of order and I know that you are lacking the last ) to match the replicate( Try this" replicate(100, { x=rep(1:10,10) y=rnorm(100,x,5) plot(y~x) abline(lm(y~x)) }) John Kane Kingston ON Canada > -Original Message- > From: aldoushuxle...@gmail.c

[R] nls problem: singular gradient

2012-07-12 Thread John C Nash
Duncan has given a indication of why nls() has troubles, and you have found a way to work around the problem partially. However, you may like to try nlmrt (from R-forge project R-forge.r-project.org/R/?group_id=395 It is intended to be very aggressive in finding a solution, and also to deal wi

[R] How to handle NA-values in raster-based Geary´s C test?

2012-07-12 Thread Kerstin Traut
Hi, I have a question on testing spatial autocorrelation on raster data including NA-values. In particular, I like to calculate Moran´s I and Geary´s C indices by using inverse distance weighting matrices. Calculating Moran´s I with moran.test works fine, because the function contains the o

Re: [R] Passing Multiple Variable Into SQLDF Statement as parameters of function

2012-07-12 Thread scstrein
Thanks! For some reason, example 5 in that documentation doesn't work for me. It runs the query, but I'm getting zero results. If I substitute the variable with the actual value, I do get the results I want. Is there a reason for this? -- View this message in context: http://r.789695.n4.nabbl

Re: [R] Results from mixed linear models

2012-07-12 Thread Bert Gunter
Post on the r-sig-mixed-models list, not here.* -- Bert * Or consult a local statistician, as your problem appears to be insufficient statistical knowledge, rather than R-related. In particular, fitting a (mixed effect) linear model without an intercept is almost always unwise. On Thu, Jul 12, 2

Re: [R] using glmnet for the dataset with numerical and categorical

2012-07-12 Thread Bert Gunter
... and you are unlikely to get a helpful reply until you follow the posting guide and post code that shows what you did. Unless there's a claiRvoyant package out there somewhere to figure it out. -- Bert On Thu, Jul 12, 2012 at 3:43 AM, yan wrote: > Dear R users, > > if all my numerical variab

Re: [R] A simple simulation question

2012-07-12 Thread Ivan Calandra
Hi Manning, There are two obvious mistakes: - close the brackets for replicate() and - do the things in the correct order replicate(100, { x=rep(1:10,10) ## first define x y=rnorm(100,x,5) ## and then y because it depends on x plot(y~x) ## then plot, because it depends on x a

Re: [R] Add row into a Matrix witout headers from Function

2012-07-12 Thread arun
Hi Jean, If we convert the NEWMatrix to dataframe,then headers do appear. NewMatrix1<-data.frame(NewMatrix)  NewMatrix1 X1 X2 X3 X4 SumMatrix   SUM 57 64 65 CountMat  COUNT  3  3  3 #assigning headers to NULL  colnames(NewMatrix1)<-NULL  NewMatrix1 NA NA NA NA SumMatr

Re: [R] How to get all list item to one string variable

2012-07-12 Thread arun
Hi, If I understand it correctly, probably this is what you want: a<-list("abc","def","ghi")  a1<-unlist(a)  paste(a1[1],a1[2],a1[3],sep=" ") [1] "abc def ghi" A.K. - Original Message - From: purushothaman To: r-help@r-project.org Cc: Sent: Thursday, July 12, 2012 8:22 AM Subject: R

Re: [R] Add row into a Matrix witout headers from Function

2012-07-12 Thread arun
Hello, The reason you are only getting one row is because each time you are replacing the NEWMatrix with new output. Try this: Oldmatrix<-read.table(text="  X1    X2    X3  22  24    23  25  27    27  10  13    15  ",sep="",header=TRUE) NewMatrix1<-rbi

[R] Warning message with read.csv.sql

2012-07-12 Thread Bharat Warule
Hello, I am using read.csv.sql first time for reading the large data file.If I am ran this code that showns warning “closing unused connection”. Is it I am missing any argument from my command or how to comeout from this warning?. R code:- Library(sqldf) ip_dir_path <- “D:/BharatWarule/big_dat

Re: [R] Add row into a Matrix witout headers from Function

2012-07-12 Thread Rantony
Thanks jean. From: Jean V Adams [via R] [mailto:ml-node+s789695n4636289...@n4.nabble.com] Sent: Thursday, July 12, 2012 6:14 PM To: Akkara, Antony (GE Energy, Non-GE) Subject: Re: Add row into a Matrix witout headers from Function Try using the rbind() function to combine the two vectors f

[R] A simple simulation question

2012-07-12 Thread Aldous Huxley
Hi! I would like to post the following question: I was trying to figure out how to do the simulation shown in Fig 10.6 of John Verzani's book 'Using R for Intro Statistics'. It is on page 290, with a description on the previous page. It seems like a simple thing... Just needing to duplicate a pro

Re: [R] How to get all list item to one string variable

2012-07-12 Thread Petr Savicky
On Thu, Jul 12, 2012 at 05:22:45AM -0700, purushothaman wrote: > hi, > > sorry it's not 2 different list all item in same list like this > > a[1]="abc" > a[2]="def" > ... > output ="abc def ..." Hi. Try this a <- list("abc", "def", "ghi") paste(a, collapse=" ") [1] "abc def ghi" Hope t

Re: [R] How to get all list item to one string variable

2012-07-12 Thread Ivan Calandra
Hi, What you did is equivalent to, but more complicated (and slower as well I guess) than: paste(a, collapse="") Ivan -- Ivan CALANDRA Université de Bourgogne UMR CNRS/uB 6282 Biogéosciences 6 Boulevard Gabriel 21000 Dijon, FRANCE +33(0)3.80.39.63.06 ivan.calan...@u-bourgogne.fr http://biogeo

Re: [R] How to get all list item to one string variable

2012-07-12 Thread arun.gurubaramurugeshan
Try this... a<-c("abc","def","ghi","klm","nop","qrs","tuv","wxyz") b<-data.frame() for (i in 1:length(a)){ b<-paste(b,a[i],sep="") } print(b) Thanks Arun --- -- View this message in context: http://r.789695.n4.nabble.com/How-to-get-all-list-item-to-one-string-variable-tp4636283p4636291.html S

Re: [R] Add row into a Matrix witout headers from Function

2012-07-12 Thread Jean V Adams
Try using the rbind() function to combine the two vectors from colSums() into a matrix. Then assign row names and get rid of column names using the dimnames() function. For example: OLDMatrix <- matrix(c(22, 25, 10, 24, 27, 13, 23, 27, 15), ncol=3, dimnames = list(NULL, c("X1", "X2",

Re: [R] identifying local maxima

2012-07-12 Thread Hans W Borchers
Gary Dong gmail.com> writes: > > Dear R users, > > I have created a Loess surface in R, in which x is relative longitude by > miles, y is relative latitude by miles, and z is population density at the > neighborhood level. The purpose is to identify some population centers in > the region. I'm w

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