Re: [R] OUTPUT the row

2010-03-19 Thread GlenB
> a<-read.table(stdin(),header=TRUE) 0: id kAgeHeight 1: 23 2 23 60 2: 12 3 28 58 3: 19 4 18 55 4: 37 5 22 54 5: > with(a,k[Age==min(Age)]) [1] 4 -- View this message in context: http://n4.nabble.com/OUTPUT-the-row-tp1644200p

[R] Getting a complete vector of Theta estimates from Package LTM

2010-03-19 Thread James L. Lewis
I am using package LTM to estimate a Rasch model: irtestimates <- rasch(binRasch) I want to get a single vector containing theta estimates for all the rows (individuals) in my data matrix (hopefully in the same order as my data matrix) such that the length of the theta vector = the number

Re: [R] Factor variables with GAM models

2010-03-19 Thread Noah Silverman
Steve, I get that. What you wrote make sense. My challenge is the data I'm attempting to model. Some of the variables are continuous, some are factors. both linear and poisson models work. (Poisson doing a much more accurate job.) However, some of the numerical variables are clearly non-l

Re: [R] Factor variables with GAM models

2010-03-19 Thread Steven McKinney
Hi Noah GAM models were developed to assess the functional form of the relationship of continuous predictor variables to the response, so weren't really meant to handle factor variables as predictor variables. GAMs are of the form E(Y | X1, X2, ...) = So + S(X1) + S(X2) + ... where S(X) is a smoo

Re: [R] strange behavior, adds new field by non-existent field

2010-03-19 Thread Bill.Venables
This is a property of lists. With the "$" form of extraction names may be abbreviated to the minimum number of characters required to specify the component uniquely. This with your tmp1 > tmp1$Q [1] 1 2 3 4 5 6 7 9 Levels: 1 2 3 4 5 6 7 9 > tmp1$Q. [1] 1 2 3 4 5 6 7 9 Levels: 1 2 3 4 5 6 7 9 >

Re: [R] Merging Matrices

2010-03-19 Thread Steven McKinney
> From: r-help-boun...@r-project.org [r-help-boun...@r-project.org] On Behalf > Of duncandonutz [dwads...@unm.edu] > Sent: March 19, 2010 1:11 PM > To: r-help@r-project.org > Subject: [R] Merging Matrices > > I have two symmetric matrices, but of different

Re: [R] Define column names to a series of data.frames

2010-03-19 Thread Nikos Alexandris
Nikos Alexandris wrote: ... > >>> I have 6 data frames consisting of 6 rows x 7 columns put together from > >>> other data.frames. ... > >>> I want to give the following column names to each data.frame: ("SDev", > >>> "PC1", "PC2", "PC3", "PC4", "PC5", "PC6") ... > >>> How is it to be done at on

Re: [R] Merging Matrices

2010-03-19 Thread David Winsemius
On Mar 19, 2010, at 4:11 PM, duncandonutz wrote: I have two symmetric matrices, but of different dimensions. The entries are identified by specific labels some of which are shared by both matrices. I would like to sum the two matrices, but retain the union of the two. In other words,

Re: [R] strange behavior, adds new field by non-existent field

2010-03-19 Thread Jorge Ivan Velez
Hi Peter, I think you want tmp1$Q.4[tmp1$Q.4 != 1 & tmp1$Q.4 != 5] <- NA tmp1 #Date HrMn Temp Q.4 # 1 19450101 900 -37.0 1 # 2 19450101 1000 -35.9 NA # 3 19450101 1100 -35.9 NA # 4 19450101 1200 -36.4 NA # 5 19450101 1300 -36.4 5 # 6 19450101 1400 -36.4 NA # 7 19450101 1500 -36.4 NA #

Re: [R] outputing text colors

2010-03-19 Thread Jakson A. Aquino
On Thu, Mar 18, 2010 at 11:27:40PM -0800, rtist wrote: > > Hi Everyone, > > And thanks for the replies. I was more specifically referring to the > console table output itself. > I have a time series that has columns of months and rows of years, and each > row,col is a value. > I wanted the actua

Re: [R] Dataframe calculations

2010-03-19 Thread jim holtman
try this: # add 'date' to separate the data SCHEDULE2 <- within(SCHEDULE2, { date <- paste(YEAR, '-', MM, '-', DD, sep='') ARRIVE <- as.POSIXct(paste(date, ARRIVE)) DEPART <- as.POSIXct(paste(date, DEPART)) }) # process each day result <- lapply(split(SCHEDULE2, SCHEDULE2$date), functi

Re: [R] strange behavior, adds new field by non-existent field

2010-03-19 Thread jim holtman
?'[' and the look for "partial matching" On Fri, Mar 19, 2010 at 3:38 PM, Peter Keller wrote: > > > data: > > tmp1 > Date HrMn Temp Q.4 > 1 19450101 0900 -37.0 1 > 2 19450101 1000 -35.9 2 > 3 19450101 1100 -35.9 3 > 4 19450101 1200 -36.4 4 > 5 19450101 1300 -36.4 5 > 6 19450101

[R] spatclus package:

2010-03-19 Thread Zhenqiang (James) Lu
Dear R users, I am using package "spatclus" for cluster detection for case event spatial data. Is there any way to get he case identical numbers within cluster after you run the main function of "clus"? Thank you. James [[alternative HTML version deleted]]

Re: [R] Can't setup rJava under ubuntu

2010-03-19 Thread fgrazi
Thank you very much, it worked! Seems that the problem is that open-sdk and not sun-jdk is expected. -- View this message in context: http://n4.nabble.com/Can-t-setup-rJava-under-ubuntu-tp1599640p1606137.html Sent from the R help mailing list archive at Nabble.com. __

[R] Merging Matrices

2010-03-19 Thread duncandonutz
I have two symmetric matrices, but of different dimensions. The entries are identified by specific labels some of which are shared by both matrices. I would like to sum the two matrices, but retain the union of the two. In other words, I want the result to be the same size as the larger of the

Re: [R] sapply, lattice functions

2010-03-19 Thread Sundar Dorai-Raj
Or perhaps more clearly, histogram(~a1 + b1 + c1, data = aa, outer = TRUE) --sundar On Fri, Mar 19, 2010 at 3:50 PM, Gabor Grothendieck wrote: > Try this: > > histogram(~ values | ind, stack(aa)) > > > On Fri, Mar 19, 2010 at 5:44 PM, Santosh wrote: > > Dear R-gurus > > > > aa <- data.frame(a

Re: [R] sapply, lattice functions

2010-03-19 Thread Gabor Grothendieck
Try this: histogram(~ values | ind, stack(aa)) On Fri, Mar 19, 2010 at 5:44 PM, Santosh wrote: > Dear R-gurus > > aa <- data.frame(a1=rnorm(20),b1=rnorm(20,0.8),c1=rnorm(20,0.5)) > sapply(aa,function(x) histogram(x,breaks=NULL)) > > or px <- sapply(aa,function(x) histogram(x,breaks=NULL)) > pri

Re: [R] sapply, lattice functions

2010-03-19 Thread Santosh
Thanks for your response. how do I print them in an ordered manner, akin to using print(px,split=c(2,2,1,1),more=T)) or par(mfrow=c(x,y))? -Santosh On Fri, Mar 19, 2010 at 2:58 PM, Gabor Grothendieck wrote: > Try this: > > junk <- sapply(aa,function(x) print(histogram(x,breaks=NULL))) > > or, s

Re: [R] Does S inherit the enhancements in R language?

2010-03-19 Thread William Dunlap
> -Original Message- > From: r-help-boun...@r-project.org > [mailto:r-help-boun...@r-project.org] On Behalf Of Paul Johnson > Sent: Friday, March 19, 2010 1:44 PM > To: R-help > Subject: [R] Does S inherit the enhancements in R language? > > I don't know anybody who has S-plus these days,

Re: [R] sapply, lattice functions

2010-03-19 Thread Gabor Grothendieck
Try this: junk <- sapply(aa,function(x) print(histogram(x,breaks=NULL))) or, shorter: for(a in aa) print(histogram(a, breaks = NULL) On Fri, Mar 19, 2010 at 5:44 PM, Santosh wrote: > Dear R-gurus > > aa <- data.frame(a1=rnorm(20),b1=rnorm(20,0.8),c1=rnorm(20,0.5)) > sapply(aa,function(x) hist

Re: [R] Sweave and " object of type 'closure' is not subsettable" error

2010-03-19 Thread Ista Zahn
Hi Jose, If you give us a reproducible example we can test it out and try to help you find the problem. -Ista On Fri, Mar 19, 2010 at 5:38 PM, jose romero wrote: > Hello folks: > > I have a data frame which includes two numeric vectors: "Pa1" and "Ingr" > (which represents income).  I run the f

[R] sapply, lattice functions

2010-03-19 Thread Santosh
Dear R-gurus aa <- data.frame(a1=rnorm(20),b1=rnorm(20,0.8),c1=rnorm(20,0.5)) sapply(aa,function(x) histogram(x,breaks=NULL)) or px <- sapply(aa,function(x) histogram(x,breaks=NULL)) print(px,split=c(1,1,1,1),more=F) The above code does not seem to work. am I missing something? Thanks, Santosh

[R] Sweave and " object of type 'closure' is not subsettable" error

2010-03-19 Thread jose romero
Hello folks: I have a data frame which includes two numeric vectors: "Pa1" and "Ingr" (which represents income).  I run the following code on the R console: ingreso <- factor(ifelse(Ingr<=3000,"bajo","alto")) tapply(Pa1,ingreso,summary) boxplot(Pa1~ingreso) and it works fine.  However, when I "

Re: [R] Does S inherit the enhancements in R language?

2010-03-19 Thread Thomas Lumley
On Fri, 19 Mar 2010, Paul Johnson wrote: I don't know anybody who has S-plus these days, but I expect some of you might, and perhaps you won't mind telling me something. I'm working on my presentation about R for the general audience. As I survey the suggestions from this list about that proje

Re: [R] DESIGN OF EXPERIMENTS

2010-03-19 Thread Ben Bolker
ATANU gmail.com> writes: > > > CAN ANYONE SUGGEST ME HOW TO DO A ANALYSIS OF ANY GIVEN DESIGN (OF EXPRIMENTS > )SAY BLOCK OR FACTORIAL OR PBIBD USING R? ?aov ?lme Google "r aov anova block" or "r aov anova factorial" etc. http://cran.r-project.org/doc/contrib/Faraway-PRA.pdf http://www

Re: [R] Arima forecasting

2010-03-19 Thread Stephan Kolassa
Hi Matteo, just use forecast.Arima() with h=2 to get forecasts up to 2 steps ahead. R will automatically use forecast.Arima() if you call forecast() with an Arima object. library(forecast) model <- auto.arima(AirPassengers) forecast(model,h=2) HTH, Stephan Matteo Bertini schrieb: Hello ev

[R] Does S inherit the enhancements in R language?

2010-03-19 Thread Paul Johnson
I don't know anybody who has S-plus these days, but I expect some of you might, and perhaps you won't mind telling me something. I'm working on my presentation about R for the general audience. As I survey the suggestions from this list about that project, I find myself wondering whether S-plus b

Re: [R] how to drop fields by name when reading in data?

2010-03-19 Thread David Winsemius
On Mar 19, 2010, at 3:03 PM, Peter Keller wrote: I have a number of space separated files of weather data, with some equivalent column names, and differing number of fields in each file. Some of the files have 40 or more vars, but I only want a subset of the fields. I can use colClasses w

[R] Using substitute in a print method

2010-03-19 Thread Chris Stubben
I've defined a new class for some really large tables, and I'd like to use substitute() in the print function. For example, if I define a new class below and create a print method for it, I can't figure out how to return the object name by just typing "d". d<-diag(2) class(d)<-c("diag") print.d

Re: [R] Survreg function for loglogistic hazard estimation

2010-03-19 Thread akeras
I a trying to use survreg to fit a Weibull distribution. From the last few messages I understand how to interpret the parameters. However, how do I get the covariance of lambda and alpha? Is there a predict command for that? Thanks -- View this message in context: http://n4.nabble.com/Survreg-f

[R] DESIGN OF EXPERIMENTS

2010-03-19 Thread ATANU
CAN ANYONE SUGGEST ME HOW TO DO A ANALYSIS OF ANY GIVEN DESIGN (OF EXPRIMENTS )SAY BLOCK OR FACTORIAL OR PBIBD USING R? -- View this message in context: http://n4.nabble.com/DESIGN-OF-EXPERIMENTS-tp1602530p1602530.html Sent from the R help mailing list archive at Nabble.com. ___

[R] Factor variables with GAM models

2010-03-19 Thread Noah Silverman
I'm just starting to learn about GAM models. When using the lm function in R, any factors I have in my data set are automatically converted into a series of binomial variables. For example, if I have a data.frame with a column named color and values "red", "green", "blue". The lm function a

Re: [R] Can't setup rJava under ubuntu

2010-03-19 Thread Romain Francois
Hi, did you try to install rJava as an ubuntu package: http://packages.ubuntu.com/lucid/math/r-cran-rjava Romain Le 19/03/10 17:38, fgrazi a écrit : When I try to install rJava, I get the following error: install.packages('rJava') ... checking whether siglongjmp is declared... yes

[R] strange behavior, adds new field by non-existent field

2010-03-19 Thread Peter Keller
data: > tmp1 Date HrMn Temp Q.4 1 19450101 0900 -37.0 1 2 19450101 1000 -35.9 2 3 19450101 1100 -35.9 3 4 19450101 1200 -36.4 4 5 19450101 1300 -36.4 5 6 19450101 1400 -36.4 6 7 19450101 1500 -36.4 7 8 19450101 1600 -37.5 9 Accidentally, I did this (I meant to write Q.4 in

Re: [R] Put square brackets as column name in a data frame

2010-03-19 Thread Ben Bolker
Paul- aurynia.com> writes: > > > names(nouvTable) = c("ID","X[m]","Y[m]","Z[m]") > Or read the table with check.names=FALSE . Note that this can lead to later hassles with referencing the columns; for example you would need nouvTable$`X[m]` rather than nouvTable$X[m]

[R] Can't setup rJava under ubuntu

2010-03-19 Thread fgrazi
When I try to install rJava, I get the following error: > install.packages('rJava') ... checking whether siglongjmp is declared... yes checking Java support in R... present: interpreter : '/usr/bin/java' archiver: '/usr/bin/jar' compiler: '/usr/bin/javac' header prep.: '/usr

[R] Put square brackets as column name in a data frame

2010-03-19 Thread Mathieu V
Hi everyone, this is a pretty simple question, but I have not found any answer about this in this forum. I'm trying to make a data frame like this : ID,X[m],Y[m],Z[m] 0,-4.32902,-3.5437,12.4441 1,-4.31887,-3.54278,12.4441 2,-4.33672,-3.54401,12.4615 3,-4.67554,-2.78566,13.4151 4,-4.71124,-2.798

Re: [R] odfWeave Error

2010-03-19 Thread Max Kuhn
Brock, Open up a dos prompt (use the Run menu item and type "cmd" without the quotes). Navigate to the odt file, then try using 7z x -tzip file.odt (where file is the name of you file). Also, below is a message that someone sent to RHelp that might be of use to you. Thanks, Max Dear all, I'm

[R] how to drop fields by name when reading in data?

2010-03-19 Thread Peter Keller
I have a number of space separated files of weather data, with some equivalent column names, and differing number of fields in each file. Some of the files have 40 or more vars, but I only want a subset of the fields. I can use colClasses with read.table to drop some of the fields, but only if I

Re: [R] Put square brackets as column name in a data frame

2010-03-19 Thread Paul-
names(nouvTable) = c("ID","X[m]","Y[m]","Z[m]") -- View this message in context: http://n4.nabble.com/Put-square-brackets-as-column-name-in-a-data-frame-tp1599725p1601142.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-proje

[R] relaimpo - dummy variable

2010-03-19 Thread Gabriela Bucini
Hi, I have a question related to the function "boot.relimp" (package relaimpo). I have a model with numerical predictors and one dummy (class) variable. I would like to calculate the relative importance of the predictors but I have some problems with the dummy variable. The name of the linear m

Re: [R] Encrypt/decrypt in R

2010-03-19 Thread Hadley Wickham
On Fri, Mar 19, 2010 at 12:35 PM, Barry Rowlingson wrote: > On Fri, Mar 19, 2010 at 5:10 PM, Barry Rowlingson > wrote: >> On Fri, Mar 19, 2010 at 5:00 PM, Hadley Wickham wrote: >>> Hi all, >>> >>> Does any one know of any encryption/decryption algorithms in R?  I'm >>> not looking for anything r

Re: [R] Dataframe calculations

2010-03-19 Thread Hosack, Michael
Unfortunately, that did not correct the problem. Times for 'ARRIVE' need to be either 07:00:00 or 14:30:00 for the first case of each unique 'MM' by 'DD' subgroup (the others will be calculated), and the code produces calculations that I can't interpret from the fixed numbers. Also, 'ARRIVE' and

Re: [R] execute functions in .dll

2010-03-19 Thread Duncan Murdoch
On 19/03/2010 12:47 PM, Tord Snäll wrote: Dear all, We have a data base with huge amounts of data that we want analysts/scientists to be able to use. These data can be accessed through the internet thanks to a SOAP based web service that we have set up. We have also developed a web service client

Re: [R] Breaking from For loop question

2010-03-19 Thread Duncan Murdoch
On 19/03/2010 11:32 AM, dc896148 wrote: Hello, I have a simple question about breaking out of a For loop. When I use the 'break' statement within a For loop, say on the first of several iterations, does control return to the top of the loop for the next iteration, or does the For loop stop comple

Re: [R] Encrypt/decrypt in R

2010-03-19 Thread Barry Rowlingson
On Fri, Mar 19, 2010 at 5:10 PM, Barry Rowlingson wrote: > On Fri, Mar 19, 2010 at 5:00 PM, Hadley Wickham wrote: >> Hi all, >> >> Does any one know of any encryption/decryption algorithms in R?  I'm >> not looking for anything robust - I want some way of printing output >> to the screen that the

Re: [R] Dataframe calculations

2010-03-19 Thread Erich Neuwirth
Sorry, Oddly I got the use of odds and evens the wrong way round. addDelays <- function(arriveTime,waitVec,travelVec){ start<-as.POSIXct(arriveTime,format="%H:%M:%S") delays<-as.vector(t(cbind(waitVec,travelVec))) newtimes<-format(start+cumsum(delays)*60,format="%H:%M:%S") list(departs=c(a

Re: [R] Encrypt/decrypt in R

2010-03-19 Thread Henrique Dallazuanna
Perhaps, If is there a connection with mysql: library(RMySQL) #conn <- dbConnect(...) encStr <- dbGetQuery(conn, "SELECT AES_ENCRYPT('teste', 'password')") dbGetQuery(conn, sprintf("SELECT AES_DECRYPT('%s', 'password')", encStr)) On Fri, Mar 19, 2010 at 2:00 PM, Hadley Wickham wrote: > Hi all,

Re: [R] Encrypt/decrypt in R

2010-03-19 Thread Marc Schwartz
On Mar 19, 2010, at 12:00 PM, Hadley Wickham wrote: > Hi all, > > Does any one know of any encryption/decryption algorithms in R? I'm > not looking for anything robust - I want some way of printing output > to the screen that the user can't read immediately, but can decrypt a > little later. Th

[R] FW: New public-use Education Longitudinal Study of 2002 Base Year to 2006 Second Follow-up data set released

2010-03-19 Thread Art Burke
Colleagues ... The site identified below makes survey data available for public use. Data may be downloaded in R format; the site also provides R syntax files to accompany the downloaded data. Registration is required. On another matter, in anticipation of future projects, I would like to hear

Re: [R] Encrypt/decrypt in R

2010-03-19 Thread Gabor Grothendieck
chartr? On Fri, Mar 19, 2010 at 1:00 PM, Hadley Wickham wrote: > Hi all, > > Does any one know of any encryption/decryption algorithms in R?  I'm > not looking for anything robust - I want some way of printing output > to the screen that the user can't read immediately, but can decrypt a > little

Re: [R] Encrypt/decrypt in R

2010-03-19 Thread Barry Rowlingson
On Fri, Mar 19, 2010 at 5:00 PM, Hadley Wickham wrote: > Hi all, > > Does any one know of any encryption/decryption algorithms in R?  I'm > not looking for anything robust - I want some way of printing output > to the screen that the user can't read immediately, but can decrypt a > little later.  

[R] Encrypt/decrypt in R

2010-03-19 Thread Hadley Wickham
Hi all, Does any one know of any encryption/decryption algorithms in R? I'm not looking for anything robust - I want some way of printing output to the screen that the user can't read immediately, but can decrypt a little later. The main thing I don't want to the user to see is a number, so (e.g

[R] execute functions in .dll

2010-03-19 Thread Tord Snäll
Dear all, We have a data base with huge amounts of data that we want analysts/scientists to be able to use. These data can be accessed through the internet thanks to a SOAP based web service that we have set up. We have also developed a web service client using Dot.NET framework, which is built

Re: [R] Dataframe calculations

2010-03-19 Thread Hosack, Michael
Erich, Thank you so much for the effort you put into writing this code. I ran it and then assigned the two variables you created to the 'ARRIVE' and 'DEPART' variables of my dataframe as you directed and the resultant calculations were incorrect. I am not sure why it did not work, I do not yet gr

Re: [R] Gamma parametrization

2010-03-19 Thread G. Jay Kerns
Dear Randall, On Fri, Mar 19, 2010 at 10:24 AM, Randall Wrong wrote: > Dear R users, > > ?rgamma gives me : > >               rgamma(n, shape, rate = 1, scale = 1/rate) > >               rate: an alternative way to specify the scale. > >               The Gamma distribution with parameters ‘shape

[R] execute functions in .dll

2010-03-19 Thread Tord Snäll
Dear all, We have a data base with huge amounts of data that we want analysts/scientists to be able to use. These data can be accessed through the internet thanks to a SOAP based web service that we have set up. We have also developed a web service client using Dot.NET framework, which is built

[R] Breaking from For loop question

2010-03-19 Thread dc896148
Hello, I have a simple question about breaking out of a For loop. When I use the 'break' statement within a For loop, say on the first of several iterations, does control return to the top of the loop for the next iteration, or does the For loop stop completely and no further iterations are proces

[R] Different results from survreg with version 2.6.1 and 2.10.1

2010-03-19 Thread nathalcs
Original Message Subject: Different results from survreg with version 2.6.1 and 2.10.1 From:natha...@ulrik.uio.no Date:Fri, March 19, 2010 16:00 To: r-help@r-project.org --

Re: [R] Pedigree / Identifying Immediate Family of Index Animal

2010-03-19 Thread Terry Therneau
On Thu, 18 Mar 2010, Ben Bimber wrote: > I have a data frame containing the Id, Mother, Father and Sex from about > 10,000 animals in our colony. I am interested in graphing simple family > trees for a given subject or small number of subjects. The basic idea is: > start with data frame from ent

Re: [R] Dataframe calculations

2010-03-19 Thread Erich Neuwirth
with the following code newvars()$ARRIVALS and newvars()$DEPARTURES will give you the new variables you need. -=-=-= addDelays <- function(arriveTime,waitVec,travelVec){ start<-as.POSIXct(arriveTime,format="%H:%M:%S") delays<-as.vector(t(cbind(waitVec,travelVec))) newtimes<-format(start+

Re: [R] How to handle missing value as first item in yearmon (zoo package)

2010-03-19 Thread Gabor Grothendieck
There is a bug in as.Date.yearmon and as.Date.yearqtr which is triggered by certain NAs. Its now fixed in the development version of zoo on R-forge. Note that in your code it only affecting printing of the yearmon variable. The yearmon variable itself is correct. Try this: source("http://r-for

Re: [R] How to read.table with “Hebrew” c olumn names (in R)?

2010-03-19 Thread William Dunlap
Bill Dunlap Spotfire, TIBCO Software wdunlap tibco.com From: Tal Galili [mailto:tal.gal...@gmail.com] Sent: Friday, March 19, 2010 12:36 AM To: William Dunlap; istaz...@gmail.com Cc: r-help@r-project.org Subject:

Re: [R] Please Post Planned Contrasts Example in lme {nlme}

2010-03-19 Thread Max Kuhn
If these are contrasts of the fixed effects, the contrast package might do. Max On Mar 19, 2010, at 5:33 AM, Liviu Andronic wrote: On 3/18/10, Martin Turcotte wrote: Hi I am running some linear and non-linear mixed effect models and would like to do some planned contrasts (a priori

[R] Gamma parametrization

2010-03-19 Thread Randall Wrong
Dear R users, ?rgamma gives me : rgamma(n, shape, rate = 1, scale = 1/rate) rate: an alternative way to specify the scale. The Gamma distribution with parameters ‘shape’ = a and ‘scale’ = s has density f(x)= 1/(s^a Gamma

[R] (no subject)

2010-03-19 Thread Terry Therneau
The change has also been made to coxme. I'm in the midst of another fix (should be done by tomorrow) and will get posted to Rforge as soon as that's done. Terry On Thu, Mar 18, 2010 at 6:26 AM, Dieter Menne wrote: > I am trying to use nlme and coxme in one Sweave document. I have read the >

[R] lpSolve

2010-03-19 Thread torgrims
Hey, Anyone who knows what the following error report when calling lp() in package lpSolve means? Error: status 3 JT -- View this message in context: http://n4.nabble.com/lpSolve-tp1599380p1599380.html Sent from the R help mailing list archive at Nabble.com.

[R] How To Specify An Improper Uniform Prior (Bayesian Analysis)

2010-03-19 Thread Ryan
Hi, In Winbugs, one can assign a distribution called "dflat()", which corresponds to an improper uniform prior on the whole real line. What would be the equivalent in R? I ask because I'm trying to run Winbugs through R, and the model I've constructed in Winbugs includes a "dflat()" distribution.

[R] How to handle missing value as first item in yearmon (zoo package)

2010-03-19 Thread Marshall Feldman
Hi, Some time series have missing values in the time index. For example historical data on business cycles will typically date them from peak to trough, but some information may be missing. In most cases, this does not cause trouble, but if the first date is missing (e.g., we know the date of

Re: [R] How to plot two cumulative frequency graph together

2010-03-19 Thread David Winsemius
On Mar 18, 2010, at 11:00 PM, Gundala Viswanath wrote: Dear masters, I have data that looks like this: #val Freq1 Freq2 Get rid of the # at the beginning of the file. It wiil be interpreted as a comment rather than a header. 0.000 178 202 0.001 4611 5300 0.002 99 112 0.003 26 30 0.004 1

[R] Dataframe calculations

2010-03-19 Thread Hosack, Michael
Hi everyone, My question will probably seem simple to most of you, but I have spent many hours trying to solve it. I need to perform a series of sequential calculations on my dataframe that move across rows and down columns, and then repeat themselves at each unique 'MM' by 'DD' grouping. Specific

Re: [R] Playwith with Linux Mint

2010-03-19 Thread Liviu Andronic
Hello On 3/19/10, Research wrote: > I am having problems installing playwith on a Linux Mint ver. 8 (Helena) > computer running R-2.10.1. > Linux Mint is Ubuntu-based, so a better venue would be r-sig-debian. > Anybody facing similar problems? > > Is it a GTK issue? I can not install the c

[R] Playwith with Linux Mint

2010-03-19 Thread Research
Hi, I am having problems installing playwith on a Linux Mint ver. 8 (Helena) computer running R-2.10.1. Anybody facing similar problems? Is it a GTK issue? I can not install the cairo related packages/libraries as well. Any pointers very welcome. Thanks + bestregards, Costas [[alte

Re: [R] Sequence of ordered variable to add as column

2010-03-19 Thread jim holtman
Here is one way of doing it: > df<-data.frame(id=c("b","b","a","a","a"),ord=c(2,1,1,3,2)) > dates<-as.Date(c("02/27/92", "02/27/92", "01/14/92", "02/28/92", + "02/01/92"),"%m/%d/%y") > df$dates<-dates > df$seq <- ave(as.numeric(df$dates), df$id, FUN=order) > df id ord dates seq 1 b 2 199

Re: [R] merge.zoo produces non unique chron time series

2010-03-19 Thread Gabor Grothendieck
Also, fyi, MATCH.times has been added to the development version of zoo so in the future these workarounds will not be necessary. That is, in the next version of zoo one can simply write merge(zoo.ts.pot, zoo.ts) here. On Thu, Mar 18, 2010 at 6:37 PM, Gabor Grothendieck wrote: > Here is a shorte

Re: [R] mboost: Interpreting coefficients from glmboost if center=TRUE

2010-03-19 Thread Benjamin Hofner
Sorry for the tardy reply but I just found your posting incidentally today. To make long things short: You are right about the centering. We forgot to correct the intercept if center = TRUE. We lately found the problem ourself and fixed it in the current version (mboost 2.0-3). However the pro

[R] Arima forecasting

2010-03-19 Thread Matteo Bertini
Hello everyone, I'm doing some benchmark comparing Arima [1] and SVR on time series data. I'm using an out-of-sample one-step-ahead prediction from Arima using the "fitted" method [2]. Do someone know how to have a two-steps-ahead forecast timeseries from Arima? Thanks, Matteo Bertini [1] htt

Re: [R] One main title and One legend for multiple lattice plots

2010-03-19 Thread Kim Jung Hwa
Ohh I got your point Deepayan, thats a stupid question from me. I can easilty rbind my four datasets, distuingusing them by a new variable, say "type", and then instead of plotting a 2D image, I can use a conditioning variable to plot a 3D image and achieve what I what. I'm sorry about this, thank

[R] lattice grob

2010-03-19 Thread baptiste auguie
Dear list, I'm trying to arrange various grid objects on a page using a frameGrob. It works fine with basic grobs (textGrob, gTree, etc.), and also with ggplot2 objects using the ggplotGrob() function. I am however stuck with lattice. As far as I understand, lattice produces a list of class trelli

[R] Odp: Sequence of ordered variable to add as column

2010-03-19 Thread Petr PIKAL
Hi r-help-boun...@r-project.org napsal dne 19.03.2010 11:25:12: > Hello all, > > As an example, consider the following dataframe > > > df<-data.frame(id=c("b","b","a","a","a"),ord=c(2,1,1,3,2)) > > dates<-as.Date(c("02/27/92", "02/27/92", "01/14/92", "02/28/92", "02/01/ > 92"),"%m/%d/%y") > >

Re: [R] Howto get unnormalized eigenvectors?

2010-03-19 Thread Duncan Murdoch
Lucek, Kay wrote: Hi, I try to calculate the angle between two first eigenvectors of different covariance matrices of biological phenotypic traits for different populations. My issue here is, that all possibilities to do so seem to normalize the eigenvectors to length 1. Although the helpfile

[R] Sequence of ordered variable to add as column

2010-03-19 Thread Duarte Viana
Hello all, As an example, consider the following dataframe > df<-data.frame(id=c("b","b","a","a","a"),ord=c(2,1,1,3,2)) > dates<-as.Date(c("02/27/92", "02/27/92", "01/14/92", "02/28/92", > "02/01/92"),"%m/%d/%y") > df$dates<-dates which was ordered with > df<-df[order(df$id,df$dates),] Now I

[R] Howto get unnormalized eigenvectors?

2010-03-19 Thread Lucek, Kay
Hi, I try to calculate the angle between two first eigenvectors of different covariance matrices of biological phenotypic traits for different populations. My issue here is, that all possibilities to do so seem to normalize the eigenvectors to length 1. Although the helpfile of eigen() states, t

Re: [R] One main title and One legend for multiple lattice plots

2010-03-19 Thread Deepayan Sarkar
On Fri, Mar 19, 2010 at 8:37 AM, Kim Jung Hwa wrote: > Hi David, > > Thank you for your reply. I'm sorry if I've misconveyed my question: here it > goes again: > > *** I want a common "main title" and a common "legend" after I > output/print four different lattice plots on a single .wmf or .pdf fi

Re: [R] Please Post Planned Contrasts Example in lme {nlme}

2010-03-19 Thread Liviu Andronic
On 3/18/10, Martin Turcotte wrote: > Hi I am running some linear and non-linear mixed effect models and would like > to do some planned contrasts (a priori contrasts) > > I have looked in the help and in many forums and it seems possible to do so > but don't understand how to write the function

Re: [R] chron package install fail in intel I7 - fedora 12

2010-03-19 Thread Uwe Ligges
On 19.03.2010 04:20, Juan Santiago Ramseyer wrote: install packages chron fail in Fedora 12, cpu I7/860 See down. Regard, Juan S. Ramseyer. install.packages() Loading Tcl/Tk interface ... done --- Please select a CRAN mirror for use in this session --- Warning in install.packages() :

Re: [R] using RKWard for a function plot

2010-03-19 Thread Matthieu Stigler
Not that I know, you should write the function yourself: g<-1 f<-2 beta<-1 curve((-2*g*x*exp(-(x^ 2)/beta)/f)) But yes the idea to add such functionality within rkward is good :-) Hope this helps Mat Is it possible to use the RKWard GUI to just plot a function? I will have some exponential

[R] Odp: Dataframe manipulation

2010-03-19 Thread Petr PIKAL
Hi maybe you shall be a little bit more clear what you really want. It is hard to copy your data o R without some extensive fiddling, so we need to rely on complicated text description. It seems that ?ave could help you but it is hard to check. Basically I would recode ARRIVE and DEPART as PO

Re: [R] How to read.table with “Hebrew” column names (in R)?

2010-03-19 Thread Tal Galili
Thanks Petr. This is my sessionInfo() R version 2.10.1 (2009-12-14) i386-pc-mingw32 locale: [1] LC_COLLATE=Hebrew_Israel.1255 LC_CTYPE=Hebrew_Israel.1255 [3] LC_MONETARY=Hebrew_Israel.1255 LC_NUMERIC=C [5] LC_TIME=Hebrew_Israel.1255 attached base packages: [1] stats graphics grDevices uti

Re: [R] Odp: language!!!

2010-03-19 Thread Tal Galili
Thanks Petr, Could you please share what is your sessionInfo() ? Contact Details:--- Contact me: tal.gal...@gmail.com | 972-52-7275845 Read me: www.talgalili.com (Hebrew) | www.biostatistics.co.il (Hebrew) | www.r-statistics

Re: [R] How to read.table with “Hebrew” c olumn names (in R)?

2010-03-19 Thread Petr PIKAL
Hi > sessionInfo() R version 2.11.0 Under development (unstable) (2010-03-09 r51229) i386-pc-mingw32 locale: [1] LC_COLLATE=Hebrew_Israel.1255 LC_CTYPE=Hebrew_Israel.1255 [3] LC_MONETARY=Hebrew_Israel.1255 LC_NUMERIC=C [5] LC_TIME=Hebrew_Israel.1255 attached base packages: [1] stats gr

Re: [R] Odp: language!!!

2010-03-19 Thread Petr PIKAL
Hi Tal Yes this was what I tried but it did not reveal hebrew signs, therefore I assume it has something to do with OS. put this line Sys.setlocale("LC_ALL", "Hebrew") in your Rprofile.site file in etc folder of your R instalatiion Regards Petr Tal Galili napsal dne 19.03.2010 09:01:20:

Re: [R] outputing text colors

2010-03-19 Thread rtist
Hi Everyone, And thanks for the replies. I was more specifically referring to the console table output itself. I have a time series that has columns of months and rows of years, and each row,col is a value. I wanted the actual text output value to the console table r,c to have a color correspond

Re: [R] How to read.table with “Hebrew” column names (in R)?

2010-03-19 Thread Tal Galili
Hello William, Ista and other R-help members, The code you suggested: read.table("http://www.talgalili.com/files/aa.txt",encoding="UTF-8"; ,check.names=FALSE, header = T, sep = "\t") Works for me the same way it does for you: I can read the data in (finally!), but some of the ways for using it fai

Re: [R] How to read.table with “Hebrew” column names (in R)?

2010-03-19 Thread Tal Galili
Hi William. (Thanks to Petr Pikal) Please try: Sys.setlocale("LC_ALL", "Hebrew") # And a<- read.table("http://www.talgalili.com/files/aa.txt",encoding="UTF-8"; ,check.names=FALSE, header = T, sep = "\t") # Notice the use of encoding a And let me know if that works... The only question I ha

Re: [R] Odp: language!!!

2010-03-19 Thread Tal Galili
Hi Petr, Please try: Sys.setlocale("LC_ALL", "Hebrew") # And a<- read.table("http://www.talgalili.com/files/aa.txt",encoding="UTF-8"; ,check.names=FALSE, header = T, sep = "\t") # Notice the use of encoding a And let me know if that works... The only question I have left is how can you set

Re: [R] Odp: language!!!

2010-03-19 Thread Petr PIKAL
Hi Thanks, I am surprised, as I tried it after Bill's post and it did not work on my machine W2000, So probably the success or failure is system specific. Regards Petr Tal Galili napsal dne 19.03.2010 08:43:11: > It worked ! > > Thank you very much Petr! > > Tal > > > >

Re: [R] Creating Rcpp RcppDatetime from string with millisecond

2010-03-19 Thread Romain Francois
Hello, Rcpp has a dedicated mailing list where such questions are appropriate. https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel Please augment your email with some code examples of what you tried and repost on Rcpp-devel. Romain Le 19/03/10 00:45, R_help Help a écrit

Re: [R] Odp: language!!!

2010-03-19 Thread Tal Galili
It worked ! Thank you very much Petr! Tal Contact Details:--- Contact me: tal.gal...@gmail.com | 972-52-7275845 Read me: www.talgalili.com (Hebrew) | www.biostatistics.co.il (Hebrew) | www.r-statistics.com (English) ---

Re: [R] Please Post Planned Contrasts Example in lme {nlme}

2010-03-19 Thread Dieter Menne
Tobias Verbeke-2 wrote: > > I would have a look at the multcomp package which allows for > defining contrasts in a very convenient way and can deal a.o. > with lme (from nlme) and mer (from lme4) objects. > > It's correct, but there is no example in the docs of glht for lmer, but there is one

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