Re: [R] renaming objects

2008-03-03 Thread Prof Brian Ripley
On Mon, 3 Mar 2008, Nordlund, Dan (DSHS/RDA) wrote: [..., quoting Hadley Wickham] gc() >>> used (Mb) gc trigger (Mb) max used (Mb) >>> Ncells 133095 3.6 35 9.4 35 9.4 >>> Vcells 87049 0.7 786432 6.0 478831 3.7 a <- runif(1e7) gc() >>>

Re: [R] Difficulty labeling plot axis when "mar" and "oma" are set

2008-03-03 Thread Prof Brian Ripley
The axis labels go in the margins -- you left no space for the margins when you asked for mar = c(0,0,0,0) and hence the labels were clipped to invisibility. It you want to write in the outer margins you have to use mtext() or title() with outer=TRUE. Looking at the pictures in 'An Introductio

Re: [R] Strange paste, string or package problem?

2008-03-03 Thread Prof Brian Ripley
On Tue, 4 Mar 2008, Thomas Allen wrote: Hi I came across this strange bug the other day, I'm not sure how to solve it and I wonder if anyone can even replicate it. Using OS Ubuntu 7.10 Step 1) Make an R package using the package.skeleton() command with only these two functions: error <- func

[R] Searching for regression technique for proportional area

2008-03-03 Thread Jennifer Hollis
I'm searching for a statistical regression technique to be applied to data relating to the proportion of area. Specifically the data i'm trying to analyse relates to how much fuel was burnt in response to fire and recorded as a percentage consumed. Any ideas or suggestions would be greatly apprec

Re: [R] Mixture of Distributions

2008-03-03 Thread David Winsemius
(Ted Harding) <[EMAIL PROTECTED]> wrote in news:[EMAIL PROTECTED]: > I just realised I made a bad mistaqke (see below) > > On 21-Feb-08 21:39:56, Ted Harding wrote: >> On 21-Feb-08 20:58:25, Evgenia wrote: >>> >>> Dear R users, >>> I would like to sample from a mixture distribution >>> p1*f1+p

[R] unlabeled tick mark interarrival

2008-03-03 Thread jeanne . thibeault
Hello list, I am using R 2.4.1 on MacOSx. I've been exploring the seas package (0.3-5) and am having a problem with plot.interarrival. I have modified the example below by using width = "mon". This works out well except for the tick mark labels on the x-axis. The x-axis should be labeled from 1-

[R] Difficulty labeling plot axis when "mar" and "oma" are set

2008-03-03 Thread eite2335
Dear all, Though labeling the x and y axis in the plot command seems to be straight forward, I can not get it to work if I do the following: ## Creating example data edata <- c(1,2,1,2) edata <- matrix(edata, 2, 2, byrow = T) colnames(edata) <- c("a", "b") edata <- data.frame(edata) ## p

Re: [R] qplot (ggplot2) faceting histogram with missing values

2008-03-03 Thread hadley wickham
Hi Ista, That's a bug, and will be fixed in the next version (hopefully to be released in the next couple of days) Hadley On Mon, Mar 3, 2008 at 7:10 PM, Ista Zahn <[EMAIL PROTECTED]> wrote: > Hi, > I've run into a difficulty with qplot function (in the ggplot2 > package). I can facet histogra

Re: [R] simulation study using R

2008-03-03 Thread Davood Tofighi
Thanks for your reply. For each condition, I will have a matrix or data frames of 1000 rows and 4 columns. I also have a total of 64 conditions for now. So, in total, I will have 64 matrices or data frames of 1000 rows and 4 columns. The format of data I would like to store would be data frames or

Re: [R] simulation study using R

2008-03-03 Thread jim holtman
What is the format of the data you are storing (single value, multivalued vector, matrix, dataframe, ...)? This will help formulate a solution. What do you plan to do with the data? Are you going to do further analysis, write it to flat files, store it in a data base, etc.? How big are the data

Re: [R] I need to buy a book in R

2008-03-03 Thread Daniel Malter
Hi, I would first look into the many manuals that you can get in the "Manuals" section of the cran-project page. Click the link contributed documentations and explore from there. There are also quite a few websites that give more insight into using R which you may google. If you have a better idea

Re: [R] Strange paste, string or package problem?

2008-03-03 Thread Berwin A Turlach
G'day Thomas, On Tue, 4 Mar 2008 14:40:35 +1300 "Thomas Allen" <[EMAIL PROTECTED]> wrote: > I came across this strange bug the other day, I'm not sure how to > solve it and I wonder if anyone can even replicate it. > Step 1) Make an R package using the package.skeleton() command with > only thes

[R] read.zoo problem reading in date time

2008-03-03 Thread stephen sefick
DateTime,Temp,SpCond,DOConc,Depth,pH,ORP,Turbidity+,Chlorophyll,Battery,Cond,DO%,Salinity,TDS 01/13/2006 17:01,10.87,84,9.36,0.664,7.3,132,28.8,3.1,11.5,0.062,84.6,0.04,0.055 01/13/2006 17:16,10.9,84,9.36,0.66,7.31,133,28.7,2.9,11.5,0.062,84.7,0.04,0.055 01/13/2006 17:31,10.92,84,9.36,0.655,7.3,132

[R] Strange paste, string or package problem?

2008-03-03 Thread Thomas Allen
Hi I came across this strange bug the other day, I'm not sure how to solve it and I wonder if anyone can even replicate it. Using OS Ubuntu 7.10 Step 1) Make an R package using the package.skeleton() command with only these two functions: error <- function(){ cmd <- paste(" -a ",1," -a ",1,"

Re: [R] making array of lists

2008-03-03 Thread Gabor Grothendieck
Try this: > a <- 1:2 > b <- 1:3 > g <- array(do.call(c, apply(expand.grid(a = a, b = b), 1, list)), +dim = c(length(a), length(b))) > g [,1] [,2] [,3] [1,] Integer,2 Integer,2 Integer,2 [2,] Integer,2 Integer,2 Integer,2 > g[[2,3]] a b 2 3 On Mon, Mar 3, 2008 at 8:21 PM, Vadim

Re: [R] exercise

2008-03-03 Thread Jorge Iván Vélez
Hi Flo, Ckeck ?agrep HTH. Jorge On 3/3/08, Flo <[EMAIL PROTECTED]> wrote: > > Hi, > > How can I solve this problem? > I have to find in a list all the words which have the same letters, but > one must be different. > Ex "pain": rain, pine... > > I hope you will understand my poor english! Tha

Re: [R] simulation study using R [SEC=UNCLASSIFIED]

2008-03-03 Thread Augusto.Sanabria
Davood, I developed an MC simulation model for wind hazard analysis last year. I found three important issues to increase efficiency: 1) Reuse most variables in each loop 2) Write results (1000 stats) to external files, perhaps one file for each condition. (a good ID for each file can be implement

[R] making array of lists

2008-03-03 Thread Vadim Organovich
Dear R Users, Given two vectors, say a = seq(2) and b = seq(3), I want to make an 2*3 array, where (i,j) element is list(a=a[i], b=b[j]). I tried the outer() function but it generates an error message that I don't understand, see below. What do I do wrong? The expan.grid function is not

Re: [R] I need to buy a book in R

2008-03-03 Thread Tom La Bone
This is a nice list: http://www.amazon.com/Use-R/lm/RNFBA3UHW2M73/ref=cm_lmt_srch_f_1_rsrsrs0 Tom kayj wrote: > > Hi All, > > I am a new user in R and I would like to buy a book that teaches me how > to use R. In addition, I may nees to do some advanced statistical > analysis. Does anyone

[R] qplot (ggplot2) faceting histogram with missing values

2008-03-03 Thread Ista Zahn
Hi, I've run into a difficulty with qplot function (in the ggplot2 package). I can facet histograms even when the faceting variable contains missing values, but only so long as the faceting variable is not a factor. Example: y1 <- rnorm(10) x1 <- c(rep(1,5), rep(2,4), NA) x2 <- factor(c(rep

Re: [R] renaming objects

2008-03-03 Thread Nordlund, Dan (DSHS/RDA)
> -Original Message- > From: [EMAIL PROTECTED] > [mailto:[EMAIL PROTECTED] On Behalf Of Rolf Turner > Sent: Monday, March 03, 2008 4:37 PM > To: hadley wickham > Cc: r-help; [EMAIL PROTECTED] > Subject: Re: [R] renaming objects > > > On 4/03/2008, at 11:48 AM, hadley wickham wrote: > >

Re: [R] Extracting data from Eigen function

2008-03-03 Thread Rolf Turner
Use mat <- eig[["vectors"]] If x is a list, ``x[i]'' gives you a (sub-) list of length 1, whereas ``x[[i]]'' gives you the single element of that list. A possibly subtle but important distinction. cheers, Rolf Turner On 4/03/2008, at 12:42 PM, SS-R wrote: > > H

Re: [R] renaming objects

2008-03-03 Thread Rolf Turner
On 4/03/2008, at 11:48 AM, hadley wickham wrote: > On Mon, Mar 3, 2008 at 4:37 PM, Rolf Turner > <[EMAIL PROTECTED]> wrote: >> >> On 4/03/2008, at 10:38 AM, Ericka Lundström wrote: >> >>> On 03/03/2008, at 22.20, [EMAIL PROTECTED] wrote: Is there a way to rename R objects? I am looki

Re: [R] How to include an externally defined NULL value in lm

2008-03-03 Thread Gabor Grothendieck
It could be done like this: > a <- if (TRUE) . ~ . + freeny.x[,4] else . ~ . > fo <- update(freey.y ~ freeny.x[, -4], a) > fo freey.y ~ freeny.x[, -4] + freeny.x[, 4] On Mon, Mar 3, 2008 at 6:24 PM, Rolf Turner <[EMAIL PROTECTED]> wrote: > > Matthieu wants to manipulate the *formula* --- i.e. co

[R] Extracting data from Eigen function

2008-03-03 Thread SS-R
Hi I need to extract the data returned by Eigen to plot the eigenvectors. However, when I try and eigv = eigen(covariance); it returns an object with the matrices containing eigenvalues and vectors.. how can I extract the eigenvector matrix from this?? When I try mat = eig["vectors"] it returns a

[R] simulation study using R

2008-03-03 Thread Davood Tofighi
Dear All, I am running a Monte Carlo simulation study and have some questions on how to manage data storage efficiently at the end of each 1000 replication loop. I have three conditions coded using the FOR {} loops and a FOR loop that generates data for each condition, performs analysis, and compu

Re: [R] [OT] "normal" (as in "Guassian")

2008-03-03 Thread roger koenker
On Mar 3, 2008, at 4:59 PM, Peter Dalgaard wrote: > Andrew Robinson wrote: >> On Mon, Mar 03, 2008 at 10:22:41PM +0100, Peter Dalgaard wrote: >> >>> Patrick Burns wrote: >>> Douglas Bates wrote: > On Mon, Mar 3, 2008 at 8:25 AM, Duncan Murdoch <[EMAIL PROTECTED] > > w

Re: [R] Tapply for Group Specific Means and Proportions

2008-03-03 Thread jim holtman
Here is how you can get the proportions from your data frame: > prop.table(table(paste(x$testdate, x$testtime), x$Behavior),margin=1) EA FL HO MA OS PE SI 28Mar96 1014 0. 0. 0.5000 0. 0. 0.

Re: [R] How to include an externally defined NULL value in lm

2008-03-03 Thread Rolf Turner
Matthieu wants to manipulate the *formula* --- i.e. control what predictors go into the formula --- rather than to add something to one of the predictors (or not, as the case maybe). I.e. what is wanted is that if ``condition'' is TRUE then the formula should be freeny.y ~ freeny.x[,-4]

Re: [R] Problem plotting curve on survival curve

2008-03-03 Thread Calum
Terry Therneau wrote: > > It is easier to get survival curves using the predict function. Here is a > simple example: >> tfit <- survreg(Surv(time, status) ~ factor(ph.ecog), data=lung) >> tdata <- data.frame(ph.ecog=factor(0:3)) >> qpred <- predict(tfit, newdata= tdata, type='quantile', p=1:99/

Re: [R] renaming objects

2008-03-03 Thread Benilton Carvalho
or, in other terms: > set.seed(1) > x <- runif(1e7) > x.add <- tracemem(x) > y <- x > y.add <- tracemem(y) > identical(x.add, y.add) [1] TRUE ie, both objects have the same memory address - therefore, not a copy: > x.add [1] "<0x200>" > y.add [1] "<0x200>" now, observe what happens whe

Re: [R] renaming objects

2008-03-03 Thread Ravi Varadhan
This is interesting! > gc() used (Mb) gc trigger (Mb) max used (Mb) Ncells 151051 4.1 35 9.4 35 9.4 Vcells 94969 0.8 20380703 155.5 30094956 229.7 > a <- runif(1e07) > gc() used (Mb) gc trigger (Mb) max used (Mb) Ncells 151046 4.1 35 9.4

Re: [R] renaming objects

2008-03-03 Thread Gabor Grothendieck
This does not really answer your question but the following lets you refer to an object by a second name although the object still has its original name as well. > a <- 3 > makeActiveBinding("b", function() a, .GlobalEnv) NULL > b [1] 3 > a <- 4 > b [1] 4 On Mon, Mar 3, 2008 at 4:20 PM, <[EMAIL

Re: [R] [OT] "normal" (as in "Guassian")

2008-03-03 Thread Peter Dalgaard
Andrew Robinson wrote: > On Mon, Mar 03, 2008 at 10:22:41PM +0100, Peter Dalgaard wrote: > >> Patrick Burns wrote: >> >>> Douglas Bates wrote: >>> >>> >>> On Mon, Mar 3, 2008 at 8:25 AM, Duncan Murdoch <[EMAIL PROTECTED]> wrote: > On 3/

[R] Stepwise Multiple Regression

2008-03-03 Thread frank frank
Dear R, I am using stepwise multiple glm to select a subset of variables using the step command. My question is how do you calculate the percentage variance for each parameter in the reduced model. An example of my code thus far is, fit<-glm(Abalone~offset(Area)+Sessile invertebrates+Bare rock+

Re: [R] renaming objects

2008-03-03 Thread hadley wickham
On Mon, Mar 3, 2008 at 4:37 PM, Rolf Turner <[EMAIL PROTECTED]> wrote: > > On 4/03/2008, at 10:38 AM, Ericka Lundström wrote: > > > On 03/03/2008, at 22.20, [EMAIL PROTECTED] wrote: > >> Is there a way to rename R objects? > >> I am looking for a way to rename objects > >> without making new o

Re: [R] [OT] "normal" (as in "Guassian")

2008-03-03 Thread Andrew Robinson
On Mon, Mar 03, 2008 at 10:22:41PM +0100, Peter Dalgaard wrote: > Patrick Burns wrote: > > Douglas Bates wrote: > > > > > >> On Mon, Mar 3, 2008 at 8:25 AM, Duncan Murdoch <[EMAIL PROTECTED]> wrote: > >> > >> > >> > >>> On 3/3/2008 9:10 AM, Rogers, James A [PGRD Groton] wrote: > >>>

[R] looping through data frames in a workspace

2008-03-03 Thread lucy b
All, I have a workspace containing only data frame objects. I would like to loop though each one and clean-up text columns in them. How can I have R loop through the list? I have tried to find an answer in R help but the closest solution I can find is to make a static list of data frames, as illus

Re: [R] renaming objects

2008-03-03 Thread Rolf Turner
On 4/03/2008, at 10:38 AM, Ericka Lundström wrote: > On 03/03/2008, at 22.20, [EMAIL PROTECTED] wrote: >> Is there a way to rename R objects? >> I am looking for a way to rename objects >> without making new objects. >> >> #For example: >> x = c(1:40) >> # I wish to use a function to rename x, al

Re: [R] How to include an externally defined NULL value in lm

2008-03-03 Thread markleeds
>From: Matthieu Stigler <[EMAIL PROTECTED]> >Date: 2008/03/03 Mon PM 04:07:09 CST >To: r-help@r-project.org >Subject: [R] How to include an externally defined NULL value in lm maybe you should a<-0 unless there's special behavior of NULL that's unknownst to me ? >Hello! > >I would love to be abl

[R] Tapply for Group Specific Means and Proportions

2008-03-03 Thread Bret Collier
UseRs, I am working on a dataset (see small example below) where individuals were followed on a specific date-time combo and multiple repeated measurements were taken (e.g., height in meters, behavior class in 2 letter code). Observation numbers varied between individual (ranging from 1 obser

Re: [R] write csv file from zoo object

2008-03-03 Thread Gabor Grothendieck
See ?write.zoo e.g. write.zoo(z1, file = "") # display on console On Mon, Mar 3, 2008 at 3:55 PM, stephen sefick <[EMAIL PROTECTED]> wrote: > # chron > library(chron) > fmt.chron <- function(x) { > chron(sub(" .*", "", x), gsub(".* (.*)", "\\1:00", x)) > } > z1 <- read.zoo(SC3.csv, sep = ","

[R] How to include an externally defined NULL value in lm

2008-03-03 Thread Matthieu Stigler
Hello! I would love to be able to include an external variable to a lm call, I mean something: if(TRUE) a<-freeny.x[,4] else a<-NULL lm(freeny.y~freeny.x[,-4] +a) but it does not work with a<-NULL, whereas lm(freeny.y~freeny.x[,-4] +NULL) I don't understand why and did not find an a

Re: [R] renaming objects

2008-03-03 Thread Ericka Lundström
On 03/03/2008, at 22.20, [EMAIL PROTECTED] wrote: > Is there a way to rename R objects? > I am looking for a way to rename objects > without making new objects. > > #For example: > x = c(1:40) > # I wish to use a function to rename x, already created, to y, > perhaps by > obj.rename(x,y) > # or >

Re: [R] I need to buy a book in R

2008-03-03 Thread Julian Burgos
Hello Kayj, There are very good tutorials at the R website. See here: http://cran.r-project.org/other-docs.html Julian kayj wrote: > Hi All, > > I am a new user in R and I would like to buy a book that teaches me how to > use R. In addition, I may nees to do some advanced statistical analysi

[R] renaming objects

2008-03-03 Thread Giles . Crane
Is there a way to rename R objects? I am looking for a way to rename objects without making new objects. #For example: x = c(1:40) # I wish to use a function to rename x, already created, to y, perhaps by obj.rename(x,y) # or obj.rename("x","y") There are numerous examples of renaming variables

Re: [R] [OT] "normal" (as in "Guassian")

2008-03-03 Thread Peter Dalgaard
Patrick Burns wrote: > Douglas Bates wrote: > > >> On Mon, Mar 3, 2008 at 8:25 AM, Duncan Murdoch <[EMAIL PROTECTED]> wrote: >> >> >> >>> On 3/3/2008 9:10 AM, Rogers, James A [PGRD Groton] wrote: >>> As someone of partly French heritage, I would also ask how this distribu

Re: [R] Help needed in R

2008-03-03 Thread AbouEl-Makarim Aboueissa
It works. Thank you so much. Abou == AbouEl-Makarim Aboueissa, Ph.D. Assistant Professor of Statistics Department of Mathematics & Statistics University of Southern Maine 96 Falmouth Street P.O. Box 9300 Portland, ME 04104-9300 Tel: (207) 228-8389 Fax: (207) 780-5607 E

[R] write csv file from zoo object

2008-03-03 Thread stephen sefick
# chron library(chron) fmt.chron <- function(x) { chron(sub(" .*", "", x), gsub(".* (.*)", "\\1:00", x)) } z1 <- read.zoo(SC3.csv, sep = ",", header = TRUE, FUN = fmt.chron) z2 <- read.zoo(SC2.csv, sep = ",", header = TRUE, FUN = fmt.chron) z3<-c(z1, z2) write.table(z3, sep="," , "SC.csv") Ho

[R] Fwd: R: Studdy Missing Data, differentiate between a percent with in the valid answers and with in the different missing answers

2008-03-03 Thread Ericka Lundström
Begin forwarded message: > Subject: R: Studdy Missing Data, differentiate between a percent > with in the valid answers and with in the different missing answers > take a look at the Website from Dirk Enzmann: > http://www2.jura.uni-hamburg.de/instkrim/kriminologie/Mitarbeiter/ > Enzmann/Softwa

Re: [R] help.start() on linux (fedora 8) when firefox alreading running - a way to open a new tab?

2008-03-03 Thread Dale Steele
Thanks. I found the issue. I was starting R in a terminal with the command 'sudo R', help.start() was not able to communicate Firefox when already running. Works fine when R is started as user. --Dale On Mon, Mar 3, 2008 at 3:09 PM, Marc Schwartz <[EMAIL PROTECTED]> wrote: > Patrick Connolly w

Re: [R] Help needed in R

2008-03-03 Thread T.K.
I guess you are looking for the number of rows satisfying the following condition. Assuming that you have a cutoff k = 1, 2, 5, 10, 15 1) x[i,1] < k regardless of the value of x[i,2], OR 2) x[i,1] == k and x[i,2] == 1 Here is my take on this problem. It is not elegant but it seems to do the job.

Re: [R] help.start() on linux (fedora 8) when firefox alreading running - a way to open a new tab?

2008-03-03 Thread Marc Schwartz
Patrick Connolly wrote: > On Sun, 02-Mar-2008 at 05:32PM -0500, Dale Steele wrote: > > |> Using linux fedora 8 (x86_64) I get the following when firefox is > |> already running. Is there a way to adjust settings in either R or > |> firefox to open a new tab when help.start() is invoked? Thanks.

Re: [R] Barplot with grouping x axis and count data

2008-03-03 Thread hadley wickham
On Mon, Mar 3, 2008 at 11:01 AM, **linda** <[EMAIL PROTECTED]> wrote: > > Hello, > I am trying to make a barplot with nested count data which is build like > this: first there are several birds (n)laying 3 clutches composed of 2 eggs > half of the second and third clutch received treatment and

Re: [R] Calculating the t-test for each row

2008-03-03 Thread James W. MacDonald
Using t.test() in this case will likely be very slow. A faster alternative would be to use rowttests() from the genefilter package of Bioconductor. Best, Jim Henrique Dallazuanna wrote: > You can try this: > > cbind(data.sub, p.value=apply(data.sub, 1, function(x)t.test(x)$p.value)) > > On 0

Re: [R] help.start() on linux (fedora 8) when firefox alreading running - a way to open a new tab?

2008-03-03 Thread Patrick Connolly
On Sun, 02-Mar-2008 at 05:32PM -0500, Dale Steele wrote: |> Using linux fedora 8 (x86_64) I get the following when firefox is |> already running. Is there a way to adjust settings in either R or |> firefox to open a new tab when help.start() is invoked? Thanks. Using FC6, it works as it says, e

Re: [R] I need to buy a book in R

2008-03-03 Thread Chuck Cleland
On 3/3/2008 2:27 PM, kayj wrote: > Hi All, > > I am a new user in R and I would like to buy a book that teaches me how to > use R. In addition, I may nees to do some advanced statistical analysis. > Does anyone recommend some books or websites where I can learn R. I would start with "An Intr

[R] I need to buy a book in R

2008-03-03 Thread kayj
Hi All, I am a new user in R and I would like to buy a book that teaches me how to use R. In addition, I may nees to do some advanced statistical analysis. Does anyone recommend some books or websites where I can learn R. Thanks -- View this message in context: http://www.nabble.com/I-ne

[R] exercise

2008-03-03 Thread Flo
Hi, How can I solve this problem? I have to find in a list all the words which have the same letters, but one must be different. Ex "pain": rain, pine... I hope you will understand my poor english! Thank you, Flo -

Re: [R] [OT] "normal" (as in "Guassian")

2008-03-03 Thread Patrick Burns
Douglas Bates wrote: >On Mon, Mar 3, 2008 at 8:25 AM, Duncan Murdoch <[EMAIL PROTECTED]> wrote: > > >>On 3/3/2008 9:10 AM, Rogers, James A [PGRD Groton] wrote: >> > As someone of partly French heritage, I would also ask how this >> > distribution came to be called "Gaussian". It seems very unfai

Re: [R] Make plots with GNUplot. Have anyone tried that?

2008-03-03 Thread Gabor Grothendieck
There was some discussion a while back of an R pgf driver for latex. Is anyone working on that? On Mon, Mar 3, 2008 at 2:09 PM, Greg Snow <[EMAIL PROTECTED]> wrote: > The gp.plot function has a type option that can either be 'p' for points > or 'l' for lines, the function is not that complicated,

Re: [R] help for the first poster- a simple question

2008-03-03 Thread Xuejun Qin
Thanks for all response. Here is more closer to my question, p<-0.05 f<-0.05 ld<-sqrt(f* (1 - f) * p * (1 - p)) D <- (p * (1 - f) - ld)/p d <- ((1 - p) * f - ld)/(1 - p) haplo<-data.frame(D,d) > haplo D d 1 -1.387779e-16 -7.304099e-18 cond1<-pmin(haplo[,1],haplo[,

Re: [R] Make plots with GNUplot. Have anyone tried that?

2008-03-03 Thread Greg Snow
The gp.plot function has a type option that can either be 'p' for points or 'l' for lines, the function is not that complicated, you could easily add additional options. I don't know why your code is not creating the pdf file, you could try plotting to the screen first (don't change the output and

Re: [R] [OT] "normal" (as in "Guassian")

2008-03-03 Thread John Kane
--- John Fox <[EMAIL PROTECTED]> wrote: > Dear Doug, > > As I recall, according to Stigler, yes -- he wasn't > the first to > formulate Stigler's law of eponymy (but I don't > recall to whom he > attributed it). Possibly a disgruntles M. de Moivre? > > Regards, > John > > On Mon, 3 Mar 2

Re: [R] help for the first poster- a simple question

2008-03-03 Thread Marianne Promberger
On 03/03/08 12:52, Xuejun Qin wrote: > Hi, there, > I cannot get accurate value for calculation. > for example: > ld<-sqrt(1*0.05*0.95*0.05*0.95) > 0.05*0.95-ld=-6.938894e-18 > 0.05*0.95-ld==0 is False. > > I met this problem in my program, how can I handle it. Thanks. I think what you are ex

[R] 1D classifier and 2D classifier

2008-03-03 Thread Waverley
Hi, Is there any package which provides the functions of create one dimensional and/or Two dimensional classifiers? Thanks much. -- Waverley @ Palo Alto __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read

[R] using 'lrm' for logistic regression

2008-03-03 Thread Utkarsh Singhal
Hi R, I am getting this error while trying to use 'lrm' function with nine independent variables: > res = lrm(y1994~WC08301+WC08376+WC08316+WC08311+WC01001+WC08221+WC08106+WC0810 1+WC08231,data=y) singular information matrix in lrm.fit (rank= 8 ). Offending variable(s): WC08101 WC0822

Re: [R] [OT] "normal" (as in "Guassian")

2008-03-03 Thread John Fox
Dear Doug, As I recall, according to Stigler, yes -- he wasn't the first to formulate Stigler's law of eponymy (but I don't recall to whom he attributed it). Regards, John On Mon, 3 Mar 2008 12:17:59 -0600 "Douglas Bates" <[EMAIL PROTECTED]> wrote: > On Mon, Mar 3, 2008 at 8:25 AM, Duncan Mur

Re: [R] Problem with lme4 use and installation

2008-03-03 Thread Douglas Bates
On Mon, Mar 3, 2008 at 9:57 AM, Charilaos Skiadas <[EMAIL PROTECTED]> wrote: > Nothing's wrong. It just means that the package or one of its > dependencies, has its own xtabs function, which "hides" the default > xtabs function, since it comes first in the search path. So when you > next write x

Re: [R] [OT] "normal" (as in "Guassian")

2008-03-03 Thread roger koenker
Yes, the sociologist Robert Merton. url:www.econ.uiuc.edu/~rogerRoger Koenker email[EMAIL PROTECTED]Department of Economics vox: 217-333-4558University of Illinois fax: 217-244-6678Champaign, IL 61820 On Mar 3, 2008, at 12

Re: [R] Calculating the t-test for each row

2008-03-03 Thread Benilton Carvalho
apparently you want to check the genefilter package... it defines functions like: rowttests colttests rowFtests colFtests rowVars rowSds moreover, a quick look at Biobase is recommended... that would save you lots of time as you wouldn't have to reinvent the wheel. b On Mar 3, 2008, at

Re: [R] esercizio

2008-03-03 Thread Mose Andre
Hey Flo, I'm not entirely sure what you're problem is -- due to the language thing, probably -- but I think you want a function that will give you (or computes in an intermediate step) the "edit distance" between strings. There is the "sdists" function in the cba package that might help (it can g

Re: [R] Calculating the t-test for each row

2008-03-03 Thread John Kane
If I understand you correctly what you want to do is do t-test (mu=0) for each column of the data. Treating the data as a data.frame rather than a matrix you can do something like this and then pick out the p-values but with 140 t-tests I don't know what you'll get in terms of anything meaninful.

Re: [R] [OT] "normal" (as in "Guassian")

2008-03-03 Thread Douglas Bates
On Mon, Mar 3, 2008 at 8:25 AM, Duncan Murdoch <[EMAIL PROTECTED]> wrote: > On 3/3/2008 9:10 AM, Rogers, James A [PGRD Groton] wrote: > > As someone of partly French heritage, I would also ask how this > > distribution came to be called "Gaussian". It seems very unfair to de > > Moivre, who disc

Re: [R] help for the first poster- a simple question

2008-03-03 Thread Gabor Csardi
R FAQ 7.31. G. On Mon, Mar 03, 2008 at 12:52:43PM -0500, Xuejun Qin wrote: > Hi, there, > I cannot get accurate value for calculation. > for example: > ld<-sqrt(1*0.05*0.95*0.05*0.95) > 0.05*0.95-ld=-6.938894e-18 > 0.05*0.95-ld==0 is False. > > I met this problem in my program, how can I handl

Re: [R] looking for some reading on accuracy of binary computers and all.equal(); was: help for the first poster- a simple question

2008-03-03 Thread Uwe Ligges
Xuejun Qin wrote: > Hi, there, > I cannot get accurate value for calculation. > for example: > ld<-sqrt(1*0.05*0.95*0.05*0.95) > 0.05*0.95-ld=-6.938894e-18 > 0.05*0.95-ld==0 is False. > > I met this problem in my program, how can I handle it. Thanks. > > > xj. > > ___

Re: [R] help for the first poster- a simple question

2008-03-03 Thread Gavin Simpson
On Mon, 2008-03-03 at 12:52 -0500, Xuejun Qin wrote: > Hi, there, > I cannot get accurate value for calculation. > for example: > ld<-sqrt(1*0.05*0.95*0.05*0.95) > 0.05*0.95-ld=-6.938894e-18 > 0.05*0.95-ld==0 is False. > > I met this problem in my program, how can I handle it. Thanks. Answer 1

Re: [R] help for the first poster- a simple question

2008-03-03 Thread jim holtman
FAQ 7.31 (You need to understand what floating point numbers are) On 3/3/08, Xuejun Qin <[EMAIL PROTECTED]> wrote: > Hi, there, > I cannot get accurate value for calculation. > for example: > ld<-sqrt(1*0.05*0.95*0.05*0.95) > 0.05*0.95-ld=-6.938894e-18 > 0.05*0.95-ld==0 is False. > > I met this

[R] ICANN 2008 Deadline Extended to March 10

2008-03-03 Thread ICANN 2008
ICANN 2008EXTENDED SUBMISSION DEADLINE MARCH 10 2008 Dear Colleague Due to numerous requests we decided to extend the submission deadline for

[R] So far so good except importing data

2008-03-03 Thread Rthoughts
HI, Thanks for your help previously. I can go around R and scilab now, except import my research data. This is an example dataset (below) of radon radiation levels. How can I import this txt file using Rcmdr? How do I import .xls files? My alpha guard radon monitors output .dvd files that can b

[R] help for the first poster- a simple question

2008-03-03 Thread Xuejun Qin
Hi, there, I cannot get accurate value for calculation. for example: ld<-sqrt(1*0.05*0.95*0.05*0.95) 0.05*0.95-ld=-6.938894e-18 0.05*0.95-ld==0 is False. I met this problem in my program, how can I handle it. Thanks. xj. __ R-help@r-project.org mai

Re: [R] Calculating the t-test for each row

2008-03-03 Thread Henrique Dallazuanna
You can try this: cbind(data.sub, p.value=apply(data.sub, 1, function(x)t.test(x)$p.value)) On 03/03/2008, Keizer_71 <[EMAIL PROTECTED]> wrote: > > Hi Everyone, > > I need some simple help. > > Here are my codes > > ##will give me 1 probesets > data.sub = data

Re: [R] Constrained regression

2008-03-03 Thread Berwin A Turlach
G'day Carlos, On Mon, Mar 3, 2008 at 11:52 AM Carlos Alzola <[EMAIL PROTECTED]> wrote: > I am trying to get information on how to fit a linear regression > with constrained parameters. Specifically, I have 8 predictors , > their coeffiecients should all be non-negative and add up to 1. I > unde

Re: [R] inheritence in S4

2008-03-03 Thread Martin Morgan
Hi Christophe -- This is a variant of the problem that Jim Regetz is having in a thread in R-devel. Here's where the trouble is > as(c, "A") Error in .local(.Object, ...) : argument "value" is missing, with no default By default, 'as(c, "A")' will create a new instance of it's second argument

Re: [R] Help needed in R

2008-03-03 Thread Charles Annis, P.E.
I believe I wrote too hastily and that what you want is sum(X < 1) which will sum the indicator (T/F) function. Charles Annis, P.E. [EMAIL PROTECTED] phone: 561-352-9699 eFax: 614-455-3265 http://www.StatisticalEngineering.com -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL

Re: [R] Help needed in R

2008-03-03 Thread Charles Annis, P.E.
perhaps you need something like sum(X[X < 1]) Charles Annis, P.E. [EMAIL PROTECTED] phone: 561-352-9699 eFax: 614-455-3265 http://www.StatisticalEngineering.com -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of AbouEl-Makarim Aboueissa Sent: Monday, M

[R] Calculating the t-test for each row

2008-03-03 Thread Keizer_71
Hi Everyone, I need some simple help. Here are my codes ##will give me 1 probesets data.sub = data.matrix[order(variableprobe,decreasing=TRUE),][1:1,] dim(data.sub) data_output<-write.table(data.sub, file = "c://data_output.csv", sep = ",", col.names = NA)

Re: [R] Help needed in R

2008-03-03 Thread AbouEl-Makarim Aboueissa
Dear ALL: Please see below. I hope this will make it more clear. [1,]11 [2,]11 number of all observations less than 1 with indicator 1 (including those 1 with indicator 1 but not 1 with indicator 0)=2 [3,]10 [4,]10 [5,]10 [6,]10 [7,

[R] Barplot with grouping x axis and count data

2008-03-03 Thread **linda**
Hello, I am trying to make a barplot with nested count data which is build like this: first there are several birds (n)laying 3 clutches composed of 2 eggs half of the second and third clutch received treatment and this treatment was tested to influence sex of offspring. I want a barplot showing c

[R] Unsubscribe!!!

2008-03-03 Thread Patrick Wang
__ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.

Re: [R] read.zoo problem reading in date time

2008-03-03 Thread Gabor Grothendieck
One must specify that there is a header if there is one, each % item should only be listed once, and format is currently only used for "Date" class so you want to use the FUN= argument -- although in the development version of zoo format is availailable more generally. Here are several ways to do t

Re: [R] Help needed in R

2008-03-03 Thread Henrique Dallazuanna
For me is not very clear, but if I understand: sapply(sort(unique(data[data[,2]==1,1])), function(x)sum(data[data[,2]==1 & data[,1] <= x, 1])) But the output is: 2 6 31 71 86 On 03/03/2008, AbouEl-Makarim Aboueissa <[EMAIL PROTECTED]> wrote: > Dear Ellison: > > it did not do i

[R] esercizio

2008-03-03 Thread Flo
Ciao a tutti! ho un problema con un esercizio in R. In una lista devo trovare tutte le parole che si differenziano per una lettera da un'altra parola. Esempio: per "casa": cosa, rosa... C'è una formula generale da applicare a tutte le parole? Grazie dell'aiuto, Flo -

[R] FW: ANNOUNCE: one day workshop on user interfaces and interactive graphics in R

2008-03-03 Thread Francis, Brian
> Workshop on user interfaces and interactive graphics in R > == > Tuesday, 1st April 10.00-16.30 Postgraduate Statistics Centre, > Department of Maths and Statistics, Lancaster University, UK > = > This one-day work

Re: [R] read.zoo problem reading in date time

2008-03-03 Thread Charilaos Skiadas
On Mar 3, 2008, at 11:12 AM, stephen sefick wrote: > x<-read.zoo("SC2.csv", sep="," , format="%m%m/%d%d/%y%y%y%y %h%h:%m% > m") > > #Error in read.zoo("SC2.csv", sep = ",", format = > "%m%m/%d%d/%y%y%y%y %h%h:%m%m") : > index contains NAs Error message You need header=TRUE in th

Re: [R] Help needed in R

2008-03-03 Thread AbouEl-Makarim Aboueissa
Dear Ellison: it did not do it. I edited my previous email to make my question more clear. The out put should be: (2,11,33,43,46) For example: number of all observations less than 1 with indicator 1 (including those 1 with indicator 1 but not 1 with indicator 0) =2 num

Re: [R] Problem with lme4 use and installation

2008-03-03 Thread Charilaos Skiadas
Nothing's wrong. It just means that the package or one of its dependencies, has its own xtabs function, which "hides" the default xtabs function, since it comes first in the search path. So when you next write xtabs(...), it is this new xtabs that is being loaded. If you want to call the or

[R] Problem with lme4 use and installation

2008-03-03 Thread Andreas Nord
Dear all, I've been trying to install the lme4 package from http://r-forge.r-project.org/projects/lme4/. However, when wanting to load the package, I get an message saying that "x-tabs" are masked (see pasted code). Can anyone point to what has gone wrong? Kind regards, Andreas Nord Sweden >

Re: [R] Latex (computer modern) fonts, pdfcairo etc. {was ... GNUplot}

2008-03-03 Thread Martin Maechler
> "BDR" == Prof Brian Ripley <[EMAIL PROTECTED]> > on Mon, 3 Mar 2008 14:16:15 + (GMT) writes: [] BDR> In a later message Louise mentioned the desire to use TeX fonts for BDR> annotation, to match a LaTeX document. Paul Murrell has pointed out his BDR>

Re: [R] Constrained regression

2008-03-03 Thread Mike Cheung
Dear Carlos, One approach is to use structural equation modeling (SEM). Some SEM packages, such as LISREL, Mplus and Mx, allow inequality and nonlinear constraints. Phantom variables (Rindskopf, 1984) may be used to impose inequality constraints. Your model is basically: y = b0 + b1*b1*x1 + b2*b2*

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