Re: [R] Calculating sum of squares from density estimates

2008-01-24 Thread Rainer M Krug
David Winsemius wrote: > Rainer M Krug <[EMAIL PROTECTED]> wrote in > news:[EMAIL PROTECTED]: > >> Hi >> >> I have some density estimates obtained from density(). I would like >> to calculate the sum of squares of these. As the x values of the >> estimates are not the same, and I would prefer not

Re: [R] How can I display an entire large output?

2008-01-24 Thread Dieter Menne
Daniel S. Ott uvm.edu> writes: > > I have been working with a mixed effects model in R where I have > a lot of fixed effects with a lot of variables. When I use the > summary command I can only view the end of the output with the > intraclass correlations and distribution of residual

[R] increasing speed for permutations of glm

2008-01-24 Thread Juliet Hannah
Dear R Programmers, I am trying to run a Poisson regression on all pairs of variables in a data set and obtain the permutation distribution. The number of pairs is around 10. It seems my code will take weeks to run, unless I try something else. Could you give me any suggestions on how to improv

Re: [R] several image.plots with same axis (maximum)

2008-01-24 Thread Prof Brian Ripley
You haven't told us where you found image.plot(): it is not part of base R and you cannot expect R-help readers to know the content of every package. At a guess, this is from package 'fields'. See the posting quide for the minimum information that we request for every posting. I don't think you

[R] several image.plots with same axis (maximum)

2008-01-24 Thread mdgi
Hello R freaks I have the following problem: I have several image plots, that need to have the same axis. i want to specify the range from 0 to a maximum value. The problem is, that the axis then only goes to the highest value of the respective plot. E.g: this is a modified example from the hel

[R] How can I display an entire large output?

2008-01-24 Thread Daniel S. Ott
Hi, I have been working with a mixed effects model in R where I have a lot of fixed effects with a lot of variables. When I use the summary command I can only view the end of the output with the intraclass correlations and distribution of residuals. I need to be able to see the summ

Re: [R] Using bquote: question

2008-01-24 Thread Prof Brian Ripley
BTW, this is not the behaviour of current versions (R-patched, R-devel, and 2.6.0 is not even the latest released version) of R, so the comment about updating in the posting guide applies. From the NEWS file plot.formula() was not accepting expressions for annotations passed t

Re: [R] how to simulate from a conditional distribution

2008-01-24 Thread Bill.Venables
If "X ~ N(0, var1), and I know Y|X ~ N(0, var2)" as stated below, then X and Y are in fact independent and you can simulate from that distribution very simply indeed: N <- 100 # or whatever... Sim <- data.frame(X = rnorm(N, sd = sqrt(var1)), Y = rnorm(N, sd = sqrt(v

Re: [R] Using bquote: question

2008-01-24 Thread Deepayan Sarkar
On 1/24/08, Bert Gunter <[EMAIL PROTECTED]> wrote: > I should have perhaps phrased my previous post better as: the result of > bquote() is a language expression argument of mode "call" which gets > evaluated by the plotmath functionality in your first plot call, but gets > evaluated in the global

Re: [R] latex{Hmisc} cannot find xdvi on MAC OS X

2008-01-24 Thread Bill Northcott
On 24/01/2008, at 10:00 PM, Kevin E. Thorpe wrote: > > When she does something like latex(describe(dataframe)), the latex > file is produced, the dvi file is successfully written but then > the error "sh: line 1: xdvi: command not found" appears. > > I started a terminal and a "which xdvi" returned

Re: [R] Using bquote: question

2008-01-24 Thread Bert Gunter
I should have perhaps phrased my previous post better as: the result of bquote() is a language expression argument of mode "call" which gets evaluated by the plotmath functionality in your first plot call, but gets evaluated in the global environment in the second before being passed back to the p

Re: [R] Using bquote: question

2008-01-24 Thread Bert Gunter
It's a bit subtle, I must admit, but this behavior **is** documented ( ya just gotta read **carefully**). Your first (S3) plot statement calls plot.default. The "main" argument matches the "main" argument of plot.default and works as you expect, plotting the expression character string that resul

Re: [R] Ryacas behaving weird

2008-01-24 Thread Rob Goedman
Don't think your settings are wrong. I guess yacas is not (yet?) Mathematica. Yacas (in a terminal) gives: In> Simplify(a*((1/(b + E) - b/(b + E)^2)/(b/(b + E))) - N * ((1/(b + E) - b/(b + E)^2)/(1 - (b/(b + E) Out> (a*b^5*E^2+5*a*b^4*E^3+10*a*b^3*E^4+10*a*b^2*E^5+5*a*b*E^6+a*E^7+ (-5)*b

[R] union

2008-01-24 Thread ninetowns
Hello, Who could tell me some more good quality b2b ad unions? Now the best union I know is tootoo union. I earned a lot from it. http://union.tootoo.com/en/xmas.jsp -- View this message in context: http://www.nabble.com/union-tp15079644p15079644.html Sent from the R help mailing list archiv

[R] Using bquote: question

2008-01-24 Thread Schools Statistics Poster Competition
Hi all Observe: x <- c(1,2) y <- c(1,-1) phi <- 1 p <- 2 par( mfrow=c(1,2)) plot(x , y, main=bquote( paste( p==.(p)," and ",phi==.(phi)) ) ) plot(y ~ x, main=bquote( paste( p==.(p)," and ",phi==.(phi)) ) ) par( mfrow=c(1,2)) On my system (details below), the first plot is correct (in my unde

[R] how to simulate from a conditional distribution

2008-01-24 Thread qq ww
Dear all, I am new to R so please bear with me for the questions. If I have x ~N(0, var1), and I know Y|X ~N(0, var2). X and Y are both vectors of equal length. How do I simulate samples for Y? [[alternative HTML version deleted]] __ R-help@r-p

[R] Help with categorical variable

2008-01-24 Thread Sunil W
Hi All I am trying to estimate a simultaneous equation model as follows: X = a.Y + b.Z + c.W Y = d.Z + e.W X is a categorical variable (0/1) and Y is a continuous variable. Can I use the tsls (two stage least square) function in the sem package to estimate this? Or, is there any other function

Re: [R] Sliding Window Time Series Analysis - hourly rainfall

2008-01-24 Thread jim holtman
Take a look at "filter" for doing a moving average. On Jan 24, 2008 6:48 AM, Jamie Ledingham <[EMAIL PROTECTED]> wrote: > I have a time series of rainfall in a dataframe. I would like to be > able to aggregate this using a sliding window approach- i.e. a new 24 > hourly total is calculated for ea

Re: [R] Barplot w/ single stacked bar

2008-01-24 Thread hadley wickham
> I can reach my goal in ggplot2, although the relative heights of the > bar's pieces don't seem quite right (it does generate a warning): > > library(ggplot2) > x<-factor(1) > y<-factor( c("Male","Male","Female") ) > mydata <- data.frame(x,y) > rm(x,y) > mydata Ooops! There was a bug in stat_bin

Re: [R] How should I organize data to compare differences in matchedpairs?

2008-01-24 Thread Thomas Levine
By accident, I didn't send this to the list. On Thu, 2008-01-24 at 17:54 -0500, Thomas Levine wrote: > Oh, right, I don't need the differences. I only needed to get the > differences before because I was doing them sloppily in a spreadsheet > and needed to do a t-test manually because the progra

[R] package 'foreign'

2008-01-24 Thread Tobias Teichert
Hi Everybody, I need to install the R-package 'foreign'. However, when I try the standard install.packages('foreign') I get the following error message: " package 'foreign' is not available in: install.packages("foreign") " The funny thing is, that I am using an Ubuntu Gutsy system and the fore

Re: [R] Displaying trailing zeroes

2008-01-24 Thread Peter Dalgaard
Lucke, Joseph F wrote: > round(12.01,1) will give the answer 12, not 12.0 or even 12. To make a > table look nice, I need to display the trailing zero so that just as > round(12.05,1) yields 12.1, round(12.01) yields 12.0. I cannot find an > answer in print() or format() or options(). Any suggest

Re: [R] Linux, UNIX, XP32, Vista X64 or ...? [SEC=UNCLASSIFIED]

2008-01-24 Thread Jin.Li
Hi Peter, Thank you for the quick answer. Given that we have UNIX system available here in Geoscience Australia, I am wondering if UNIX is also faster and with 64 bit build. Perhaps they may be kind enough to let me have a Linux system. As I only have experience in using Windows PC, what kind of c

Re: [R] latex{Hmisc} cannot find xdvi on MAC OS X

2008-01-24 Thread Kevin E. Thorpe
Don MacQueen wrote: > Nobody seems to have asked whether the student is using R from the Mac > GUI, or R at the unix-style command line prompt. > > I have R 2.6.1 installed on a Mac running OS 10.4.11. When I start R at > the command prompt in a terminal emulator in the X windows environment, > t

Re: [R] Displaying trailing zeroes

2008-01-24 Thread Duncan Murdoch
On 24/01/2008 4:36 PM, Lucke, Joseph F wrote: > round(12.01,1) will give the answer 12, not 12.0 or even 12. Those are all the same number. You aren't asking about the answer, you are asking about how to control how the number is printed. To make a > table look nice, I need to display the tra

Re: [R] latex{Hmisc} cannot find xdvi on MAC OS X

2008-01-24 Thread Don MacQueen
Nobody seems to have asked whether the student is using R from the Mac GUI, or R at the unix-style command line prompt. I have R 2.6.1 installed on a Mac running OS 10.4.11. When I start R at the command prompt in a terminal emulator in the X windows environment, the example expression, latex(

[R] Grouping

2008-01-24 Thread Judith Flores
I need to group some subjects according to two variables (var1, var2) I have a data frame that looks something like this: Subject var1 var2 1 400150 2 320100 3 580600 4 145789 Each suject would fall into one of

Re: [R] Re shaping a dataframe with conditional summary of columns - apply or reshape?

2008-01-24 Thread David Hewitt
>> x$survey1[x$count==0] <- 0 >> x$survey1[x$count %in% 1:11] <- 1 >> x$survey1[x$count > 11] <- 2 >> x.wide <- reshape(x, v.names="survey1", idvar="location", >> timevar="survey1", direction="wide") >> x.wide <- x.wide[order(x.wide$location),] >> x.wide$var1 <- tapply(x$var1, x$location, mean)

Re: [R] Re shaping a dataframe with conditional summary of columns - apply or reshape?

2008-01-24 Thread David Hewitt
> Try this: > > x$survey1[x$count==0] <- 0 > x$survey1[x$count %in% 1:11] <- 1 > x$survey1[x$count > 11] <- 2 > x.wide <- reshape(x, v.names="survey1", idvar="location", > timevar="survey1", direction="wide") > x.wide <- x.wide[order(x.wide$location),] > x.wide$var1 <- tapply(x$var1, x$locatio

Re: [R] Displaying trailing zeroes

2008-01-24 Thread Christos Hatzis
formatC(round(12.01), digits=1, format="f") -Christos > -Original Message- > From: [EMAIL PROTECTED] > [mailto:[EMAIL PROTECTED] On Behalf Of Lucke, Joseph F > Sent: Thursday, January 24, 2008 4:37 PM > To: r-help@r-project.org > Subject: [R] Displaying trailing zeroes > > round(12.01,1

[R] Displaying trailing zeroes

2008-01-24 Thread Lucke, Joseph F
round(12.01,1) will give the answer 12, not 12.0 or even 12. To make a table look nice, I need to display the trailing zero so that just as round(12.05,1) yields 12.1, round(12.01) yields 12.0. I cannot find an answer in print() or format() or options(). Any suggestions would be appreciated. Jose

[R] Odp: boxplot axis labelling

2008-01-24 Thread Petr PIKAL
Hi [EMAIL PROTECTED] napsal dne 24.01.2008 18:20:41: > > >Hi, > > >i'm very new to R, so sorry for what i'm sure is a very basic question. I'm >producing a boxplot with the data below: > >df3<-data.frame( > x=c(10,11,115,12,13,14,16,17,18,21,22,23,24,26,27,28,29,3,30,32,33,

Re: [R] Alternating numbers in rep()

2008-01-24 Thread Greg Snow
The last one can be shortened to: > c(aperm(array(1:4, c(2,2,6)),c(1,3,2))) [1] 1 2 1 2 1 2 1 2 1 2 1 2 3 4 3 4 3 4 3 4 3 4 3 4 And it extends to 38 fairly easily: > c(aperm(array(1:38, c(2,38/2,6)),c(1,3,2))) [1] 1 2 1 2 1 2 1 2 1 2 1 2 3 4 3 4 3 4 3 4 3 4 3 4 5 [26]

Re: [R] testing coeficients of glm

2008-01-24 Thread Achim Zeileis
On Thu, 24 Jan 2008, peter salzman wrote: > Dear list, > > i'm trying to test if a linear combination of coefficients of glm is equal > to 0. For example : > class 'cl' has 3 levels (1,2,3) and 'y' is a response variable. We want to > test H0: mu1 + mu2 - mu3 =0 where mu1,mu2, and mu3 are the me

Re: [R] Alternating numbers in rep()

2008-01-24 Thread Greg Snow
Here are a couple of options (I'm sure there are plenty of others) that replicate your results and can be extended without too much more typing (but some arithmatic): > unname(unlist( rep( as.data.frame( matrix(1:4, nrow=2) ) , each=6 ) )) [1] 1 2 1 2 1 2 1 2 1 2 1 2 3 4 3 4 3 4 3 4 3 4 3 4 > c(a

Re: [R] Error using Rmetrics to read data

2008-01-24 Thread Henrique Dallazuanna
Yes, in the previous email that I send to you i comment this: you need the %Y SP500$Date <- as.character(as.Date(as.character(SP500$Date), "%m/%d/%Y")) On 24/01/2008, Kerpel, John <[EMAIL PROTECTED]> wrote: > But look what happens to the date field: > > SP500<-read.table("SP500.csv",header=TRUE,

Re: [R] Error using Rmetrics to read data

2008-01-24 Thread Kerpel, John
But look what happens to the date field: SP500<-read.table("SP500.csv",header=TRUE,sep=",") > head(SP500) DateOpenHigh Low Close Volume Close2 1 8/4/2006 1280.26 1292.92 1273.82 1279.40 2530970112 1279.40 2 8/3/2006 1278.22 1283.96 1271.25 1280.27 2728440064 1280.27 3

Re: [R] two histograms in the same graph

2008-01-24 Thread Peter Dalgaard
Duncan Murdoch wrote: > On 1/24/2008 9:43 AM, Juan Pablo Fededa wrote: > >> Dear Contributors: >> >> I have two vectors x and z, and I want to display the histograms of both >> vectors in the same graph, x in red bars, z in blue bars. >> If you have any clue on how to do that, I will be very gla

Re: [R] Alternating numbers in rep()

2008-01-24 Thread Gabor Csardi
On Thu, Jan 24, 2008 at 03:03:22PM -0500, David Afshartous wrote: > > All, > > I'm trying to obtain a one-liner to generate a certain sequence of > alternatign numbers. > > Consider: > > unlist(rep(list(c(1,2), c(3,4)), each = 6)) > [1] 1 2 1 2 1 2 1 2 1 2 1 2 3 4 3 4 3 4 3 4 3 4 3 4 > > I'd l

Re: [R] Error using Rmetrics to read data

2008-01-24 Thread Henrique Dallazuanna
SP500$Date <- as.character(as.Date(as.character(SP500$Date), "%m/%d/%y")) SP500<-as.timeSeries(SP500) On 24/01/2008, Kerpel, John <[EMAIL PROTECTED]> wrote: > Hi folks. This set of code used to work, but after upgrading to the > latest version of Rmetrics it no longer does. Any ideas? > > > > SP

Re: [R] Alternating numbers in rep()

2008-01-24 Thread Charles C. Berry
This ?? as.vector( outer(0:1, rep(seq(1,37,by=2), each=6), "+" ) ) On Thu, 24 Jan 2008, David Afshartous wrote: > > All, > > I'm trying to obtain a one-liner to generate a certain sequence of > alternatign numbers. > > Consider: >> unlist(rep(list(c(1,2), c(3,4)), each = 6)) > [1] 1 2 1 2

Re: [R] testing coeficients of glm

2008-01-24 Thread peter salzman
thank you, peter On 1/24/08, Prof Brian Ripley <[EMAIL PROTECTED]> wrote: > > On Thu, 24 Jan 2008, peter salzman wrote: > > > Dear list, > > > > i'm trying to test if a linear combination of coefficients of glm is > equal > > to 0. For example : > > class 'cl' has 3 levels (1,2,3) and 'y' is a res

[R] Alternating numbers in rep()

2008-01-24 Thread David Afshartous
All, I'm trying to obtain a one-liner to generate a certain sequence of alternatign numbers. Consider: > unlist(rep(list(c(1,2), c(3,4)), each = 6)) [1] 1 2 1 2 1 2 1 2 1 2 1 2 3 4 3 4 3 4 3 4 3 4 3 4 I'd like the result to be as above but continue until 38. Of course, I could hardcode this g

[R] Error using Rmetrics to read data

2008-01-24 Thread Kerpel, John
Hi folks. This set of code used to work, but after upgrading to the latest version of Rmetrics it no longer does. Any ideas? SP500<-read.table("SP500.csv",header=TRUE,sep=",") > head(SP500) DateOpenHigh Low Close Volume Close2 1 8/4/2006 1280.26 1292.92 1273.82 1

Re: [R] step and glm : keep all models

2008-01-24 Thread Prof Brian Ripley
On Thu, 24 Jan 2008, Sylvain Bertrand wrote: > Hi everyone, > > I'm running the following command: > >> step(mydata.glm,directions="both",trace=T) > > which returns the model with the lowest AIC. > Now I'd like to get the list of all the models (or at least the formulas) > that were used in betwee

Re: [R] testing coeficients of glm

2008-01-24 Thread Prof Brian Ripley
On Thu, 24 Jan 2008, peter salzman wrote: > Dear list, > > i'm trying to test if a linear combination of coefficients of glm is equal > to 0. For example : > class 'cl' has 3 levels (1,2,3) and 'y' is a response variable. We want to > test H0: mu1 + mu2 - mu3 =0 where mu1,mu2, and mu3 are the me

Re: [R] How should I organize data to compare differences in matchedpairs?

2008-01-24 Thread Greg Snow
Here is how I would do it (there are multiple ways you could do it, so there is not single "Right" answer): Assign each person a unique identifier. Put all the information from the questionaire along with the idenifier and anything else that does not change between rounds (age, sex, height, ...)

[R] step and glm : keep all models

2008-01-24 Thread Sylvain Bertrand
Hi everyone, I'm running the following command: > step(mydata.glm,directions="both",trace=T) which returns the model with the lowest AIC. Now I'd like to get the list of all the models (or at least the formulas) that were used in between. I've noticed the "keep" option, but couldnt find any hel

Re: [R] How should I organize data to compare differences in matched pairs?

2008-01-24 Thread John Kane
Putting all the information in one row is going to be the easest for data entry and for analysis. If it's easier you can enter the task information in one data set and the questionnaire in another (with the same unique id ) and merge the data sets later if you need to. All you want is the data

Re: [R] Filling data frame data into a matrix - please help

2008-01-24 Thread Henrique Dallazuanna
Perhaps this helps: myres <- d1.tb[] attributes(myres)$call <- NULL myres class(myres) If you want remove 'c1' and 'r1' then: names(dimnames(myres)) <- NULL class(myres) On 24/01/2008, Srinivas Iyyer <[EMAIL PROTECTED]> wrote: > Dear Henrique, > thanks for the tip. > > One question though:

Re: [R] Reshaping a dataframe with conditional summary of columns - apply or reshape?

2008-01-24 Thread Henrique Dallazuanna
Try this: x$survey1[x$count==0] <- 0 x$survey1[x$count %in% 1:11] <- 1 x$survey1[x$count > 11] <- 2 x.wide <- reshape(x, v.names="survey1", idvar="location", timevar="survey1", direction="wide") x.wide <- x.wide[order(x.wide$location),] x.wide$var1 <- tapply(x$var1, x$location, mean) x.wide On

[R] JRI problem with R 2.6.1

2008-01-24 Thread Vladmir Makarov
Hello Members, I wonder if someone also having a problem with JRI using new R 2.6.1. To illustrate the problem, there is a simple Java driver problem below. The program runs just fine on the other computer with R 2.5.1, but does not run with R 2.6.1. It gives me no error messages either. Needles to

[R] testing coeficients of glm

2008-01-24 Thread peter salzman
Dear list, i'm trying to test if a linear combination of coefficients of glm is equal to 0. For example : class 'cl' has 3 levels (1,2,3) and 'y' is a response variable. We want to test H0: mu1 + mu2 - mu3 =0 where mu1,mu2, and mu3 are the means for each level. for me, the question is how to ge

[R] How should I organize data to compare differences in matched pairs?

2008-01-24 Thread Thomas Levine
I'm just learning how to use R right now, so I'm not sure what the most efficient way to organize these data is. I had subjects perform the same task twice with slight changes between the rounds. I want to analyze differences between the rounds. All of the subjects also answered a questionnaire.

Re: [R] Filling data frame data into a matrix - please help

2008-01-24 Thread Srinivas Iyyer
Dear Henrique, thanks for the tip. One question though: how do I get back a matrix out of d1.tb. d1.tb is an xtabs object. I tried: myres <- ftable(d1.tb) myre1 <- as.data.frame(myres) now myres1 is nor a matrix or a df. I want d1.tb as a matrix. Please suggest. thanks srini --- Henriqu

Re: [R] Filling data frame data into a matrix - please help

2008-01-24 Thread Henrique Dallazuanna
Try this: d1 <- data.frame(d1) d1$V3 <- as.numeric(as.character(d1$V3)) xtabs(V3 ~ r1+c1, data=d1) You can substitute 0 with NA: d1.tb <- xtabs(V3 ~ r1+c1, data=d1) d1.tb[d1.tb==0] <- NA On 24/01/2008, Srinivas Iyyer <[EMAIL PROTECTED]> wrote: > Dear group, > I have a data.frame (d1) with vari

[R] latex{Hmisc} cannot find xdvi on MAC OS X

2008-01-24 Thread David Airey
. I also have an issue on the Mac getting latex(describe(iris)) to work. I get the .tex file but this error: > latex(describe(iris)) This is pdfTeXk, Version 3.141592-1.40.3 (Web2C 7.5.6) %&-line parsing enabled. entering extended mode (/var/folders/AJ/AJjttUSSFdSi1HiInJZyYTI/-Tmp-//Rtm

[R] Filling data frame data into a matrix - please help

2008-01-24 Thread Srinivas Iyyer
Dear group, I have a data.frame (d1) with various elements and a matrix (m1) created with NA (or 1s). I want to read each row,column in d1 and fill its numeric value in m1. Could some one help me because I have 130K rows and 500 column data.frame object and I was told that a for loop will take a

Re: [R] Maximum entropy spectral analysis

2008-01-24 Thread Dieter Menne
Nuno Prista fc.ul.pt> writes: > Is there on R a package containing Maximum entropy spectral analysis > function? Burg and Yule-Walker are in spec.ar(stats) Dieter __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEA

[R] HELP cpa in R

2008-01-24 Thread TEBBI FATIMA
hi, iam working with cpa method ade4 and want to simulate with this mehod is it possible and how ? thank you - [[alternative HTML version deleted]] __ R-help@r-project.org mailing list htt

[R] boxplot axis labelling

2008-01-24 Thread [EMAIL PROTECTED]
Hi, i'm very new to R, so sorry for what i'm sure is a very basic question. I'm producing a boxplot with the data below: df3<-data.frame( x=c(10,11,115,12,13,14,16,17,18,21,22,23,24,26,27,28,29,3,30,32,33,34,35,4,4 1,45,5,50,52,56,58,6,67,6738,68,7,8,9), fq=c(8,11,1,2,4,4,

[R] Using and external text editor with R

2008-01-24 Thread sewatkins
I am a new user of Crimson editor and was hoping that someone could help me to integrate Crimson Editor to run programs in R. I have tried the following and I receive an error message stating Argument Ignored. Command: C:\Program Files\R\R-2.6.0\bin\Rgui.exe Argument: "$(FileName)" "$(FileDir)"

Re: [R] problems with .svg

2008-01-24 Thread Prof Brian Ripley
I suspect you have ignored 'If you are using an old version of R and think it does not work properly, upgrade to the latest version and try that, before posting.' (from the posting guide). You didn't tell us your R version (as we asked in the posting guide) and so we have assumed it was th

Re: [R] Barplot w/ single stacked bar

2008-01-24 Thread Muenchen, Robert A (Bob)
Marc & Eric, Thanks so much for the help. That is exactly what I was looking for. I should have mentioned that I don't really like this plot, but I'm writing an explanation of the Grammar of Graphics concept. A very nice example of that is that a single stacked bar chart converts to a pie chart

Re: [R] Bar width and labels in barchart

2008-01-24 Thread Deepayan Sarkar
On 1/23/08, Spilak,Jacqueline [Edm] <[EMAIL PROTECTED]> wrote: > Hi everyone > I am using barchart to make my graphs. Here is my code. > > barchart(percent_below ~ factor(Year)| factor(Season, > levels=unique(Season)), > data= .season_occurrence, origin = 0, layout = c(4, 1), > scales=list(t

Re: [R] Fortran level mismatch between package and R

2008-01-24 Thread Steve Simmons
On Jan 18, 2008, at 5:57 PM, Hesen Peng wrote: > Hi, > > I recompiled R using gfortran in my personal laptop. But I think it > may help if you build an agent C program which calls the FORTRAN > program, and then call the C program from R. > > I'm also curious on how to solve this problem without

Re: [R] Printing large number

2008-01-24 Thread Greg Snow
There is more than one way, but probably the easiest is to set options(scipen= ). See ?options for details. Hope this helps, -- Gregory (Greg) L. Snow Ph.D. Statistical Data Center Intermountain Healthcare [EMAIL PROTECTED] (801) 408-8111 > -Original Message- > From: [EMAIL PROTECT

[R] readClipboard() from spreadsheet to data.frame with column names?

2008-01-24 Thread Kenneth Hobson
This code opens a CSV file from the working directory set by wd. I copy 2 or more columns in the spreadsheet and then close it. What I need help with is setting the first row as the column names in clipboardTextAsDF. There is probably a simple or better way to do this but I have been away fr

Re: [R] adjustment on the x-axis scale width

2008-01-24 Thread Greg Snow
Specify xlim and ylim in the plot function to set the limits on the x/y axis. See ?plot.default for details. -- Gregory (Greg) L. Snow Ph.D. Statistical Data Center Intermountain Healthcare [EMAIL PROTECTED] (801) 408-8111 > -Original Message- > From: [EMAIL PROTECTED] > [mailto:[E

Re: [R] Barplot w/ single stacked bar

2008-01-24 Thread Marc Schwartz
Muenchen, Robert A (Bob) wrote: > Hi All, > > I can get the barplot function to do many types of plots, stacked or > otherwise. However, I cannot get it to do a *single* stacked bar. I've > searched several books & listserv archives to no avail. I suspect I'm > missing the obvious from the help fi

Re: [R] plot help

2008-01-24 Thread Greg Snow
Look at the examples for cnvrt.coords in the TeachingDemos package, they might give you some ideas to accomplish what you want. -- Gregory (Greg) L. Snow Ph.D. Statistical Data Center Intermountain Healthcare [EMAIL PROTECTED] (801) 408-8111 > -Original Message- > From: [EMAIL PROTEC

[R] TAF/METAR decoder

2008-01-24 Thread Ptit_Bleu
Hi, I'm looking for a script to translate TAF/METAR code into comprehensive text that I can include in a R-script (METAR is the international standard code format for hourly surface weather observations). I haven't seen anything in the libraries. Do you think such a thing exists for R ? Thanks

Re: [R] R help?

2008-01-24 Thread Greg Snow
Use summary on the fitted lm object, i.e.: > fit <- lm(y ~ x, data=mydata) > summary(fit) And the t-tests will be printed (along with a bunch of other stuff). You can also save the results of summary if you want to use the t-values and p-values for something else. Hope this helps, -- Gregory (

[R] Barplot w/ single stacked bar

2008-01-24 Thread Muenchen, Robert A (Bob)
Hi All, I can get the barplot function to do many types of plots, stacked or otherwise. However, I cannot get it to do a *single* stacked bar. I've searched several books & listserv archives to no avail. I suspect I'm missing the obvious from the help file! I can reach my goal in ggplot2, althoug

Re: [R] image question

2008-01-24 Thread Greg Snow
Here is another approach that may or may not be easier: > library(TeachingDemos) > > x <- 0:4 > y <- 0:20 > > z <- matrix( runif(80), ncol=20 ) > > image(x,y,z) > > clipplot( image(x,y,z, col=heat.colors(12), add=TRUE), xlim=c(0,1) ) > clipplot( image(x,y,z, col=terrain.colors(12), add=TRUE),

Re: [R] Calculating sum of squares from density estimates

2008-01-24 Thread David Winsemius
Rainer M Krug <[EMAIL PROTECTED]> wrote in news:[EMAIL PROTECTED]: > Hi > > I have some density estimates obtained from density(). I would like > to calculate the sum of squares of these. As the x values of the > estimates are not the same, and I would prefer not to restrict the > estiomate to a

[R] Ryacas behaving weird

2008-01-24 Thread francogrex
There is either something wrong with either me or is Yacas/Ryacas doing odd things. See below I ask to simpify an expression and the there's output! If this is a simplification.. well.. Do you think there is something set wrong somewhere. Thanks. > library(Ryacas) Loading required package: XML >

Re: [R] two histograms in the same graph

2008-01-24 Thread Duncan Murdoch
On 1/24/2008 9:43 AM, Juan Pablo Fededa wrote: > Dear Contributors: > > I have two vectors x and z, and I want to display the histograms of both > vectors in the same graph, x in red bars, z in blue bars. > If you have any clue on how to do that, I will be very glad to hear it!! It's hard to

Re: [R] save a plot from R graphics window (in Windows)

2008-01-24 Thread john seers (IFR)
Hi Are you sure this is an R problem? The "Choose" dialog can be very slow if you have networked directories that cannot be connected to. Windows tries to connect repeatedly and each time waits for a timeout. Suggest you check your mapped network drives. Regards JS --- Dear R users sinc

Re: [R] two histograms in the same graph

2008-01-24 Thread ONKELINX, Thierry
That's an easy one with ggplot2. library(ggplot2) dataset <- data.frame(variable = gl(2, 50, labels = c("x", "z")), value = c(runif(50), rnorm(50))) ggplot(data = dataset, aes(x = value, fill = variable)) + geom_histogram(position = "dodge") + scale_fill_manual(values = c("red", "blue"), guide = "

Re: [R] problems with .svg

2008-01-24 Thread Mag. Ferri Leberl
Dear everybody, I still didn't manage to install the RSvgDevice-Package. Please, note the attached file: The server cannot seriousely be the problem. I would be glad if you could find the mistake. Thank you in advance. Yours, Mag. Ferri Leberl Am Sonntag, den 20.01.2008, 18:29 + schrieb Prof

Re: [R] Printing large number

2008-01-24 Thread Liviu Andronic
On 1/24/08, alex lam (RI) <[EMAIL PROTECTED]> wrote: > Dear R users, > > Just a quick question, how do I prevent 10 printed as 1e+05 when I > print it into a file? ?options You would be interested in "scipen" and/or "digits". # # Set digits display options options(digits = 4) options(scipen =

[R] possible inconsistency in nlme logLik or me

2008-01-24 Thread Daniel O'Shea
Hello, I am comparing 2 nonlinear models one with a correlation structure. I used the gnls command in the nlme package to fit model 1 and then the update(mod1,corr=corExp(form=~lat+lon,nugget=T) to fit the same model but with a correlation structure. I am comparing models using AIC, but I am ge

Re: [R] Parametric survival models with left truncated, right censored data

2008-01-24 Thread Terry Therneau
Bill Meeker's programs for reliability analysis can fit this, they are part of his SPLIDA package for Splus. I'm not sure that anyone has ported these to R however. The survreg routine does not handle this case, and psm call survreg to do the actual work. Terry Therneau _

[R] two histograms in the same graph

2008-01-24 Thread Juan Pablo Fededa
Dear Contributors: I have two vectors x and z, and I want to display the histograms of both vectors in the same graph, x in red bars, z in blue bars. If you have any clue on how to do that, I will be very glad to hear it!! Thanks in advance again, Juan Pablo Fededa [[alternative HTML

[R] Maximum entropy spectral analysis

2008-01-24 Thread Nuno Prista
Hi, Is there on R a package containing Maximum entropy spectral analysis function? Thanks in advance, Nuno Prista __ Instituto de Oceanografia - FCUL, Portugal Center for Quantitative Fisheries Ecology - ODU, USA [[al

Re: [R] Lattice on FreeBSD

2008-01-24 Thread Rainer Hurling
-- X-USF-Spam-Status: hits=-2.5 tests=BAYES_00,FORGED_RCVD_HELO X-USF-Spam-Flag: NO Armin Goralczyk, I am working with FreeBSD 8.0-CURRENT, R-2.6.1 and lattice() installs fine. I think you have to update your FreeBSD ports tree. Afterwards you can install R-2.6.0. The newest version R-2.6.1 is

Re: [R] save a plot from R graphics window (in Windows)

2008-01-24 Thread Duncan Murdoch
On 24/01/2008 9:00 AM, Giovanni Maria Marchetti wrote: > Dear R users > > since R 2.6.0 when I try to save a graph from the Rgraphic device I find > that > the system becomes so slow that I'm forced to kill the process. > This usually does not happen at the beginning of the session. > The problem

Re: [R] singular.ok in lm

2008-01-24 Thread Prof Brian Ripley
On Thu, 24 Jan 2008, Martin Eklund wrote: > Dear R users, > > I'm wondering about the singular.ok option in lm. If singular.ok is > set to TRUE does it mean that we allow the generalized inverse of > (X'X)^-1 (where X are the independent variables and ' denotes the > transpose)? Or is the singular

Re: [R] vector generation

2008-01-24 Thread Albert Greinoecker
z[z > 1] regards, Albert Am Donnerstag, den 24.01.2008, 10:54 -0300 schrieb Juan Pablo Fededa: > Dear Contributors: > > I have the next vector: > > "Z" > > z = (526, 0.1, 110, 0.2, 34, 0.4, 614, 0.5, 1, 14, 15) > > > I want to generate a vector containing the values higher than 1 > correspo

Re: [R] surface plot

2008-01-24 Thread Duncan Murdoch
On 24/01/2008 8:59 AM, threshold wrote: > Hi, there is following issue, which I encounter when doing data analysis. Say > we have data in form of the matrix x: > >> x > [,1] [,2] [,3] > [1,] 0.14 10 > [2,] 0.25 11 > [3,] 0.15 12 > [4,] 0.16 13 > [5,] 0.24 14

[R] Calculating sum of squares from density estimates

2008-01-24 Thread Rainer M Krug
Hi I have some density estimates obtained from density(). I would like to calculate the sum of squares of these. As the x values of the estimates are not the same, and I would prefer not to restrict the estiomate to a certain range of x values, how can I do the calculation? Lets say: d1 <- de

[R] save a plot from R graphics window (in Windows)

2008-01-24 Thread Giovanni Maria Marchetti
Dear R users since R 2.6.0 when I try to save a graph from the Rgraphic device I find that the system becomes so slow that I'm forced to kill the process. This usually does not happen at the beginning of the session. The problem seems to arise when the system opens the dialog window to choose the

[R] surface plot

2008-01-24 Thread threshold
Hi, there is following issue, which I encounter when doing data analysis. Say we have data in form of the matrix x: > x [,1] [,2] [,3] [1,] 0.14 10 [2,] 0.25 11 [3,] 0.15 12 [4,] 0.16 13 [5,] 0.24 14 [6,] 0.35 16 now I want to do surface plot of x[,

[R] vector generation

2008-01-24 Thread Juan Pablo Fededa
Dear Contributors: I have the next vector: "Z" z = (526, 0.1, 110, 0.2, 34, 0.4, 614, 0.5, 1, 14, 15) I want to generate a vector containing the values higher than 1 corresponding to the z vector, wich in this case will mean to generate the next vector: (526, 110, 34, 614, 14, 15) If you ha

[R] singular.ok in lm

2008-01-24 Thread Martin Eklund
Dear R users, I'm wondering about the singular.ok option in lm. If singular.ok is set to TRUE does it mean that we allow the generalized inverse of (X'X)^-1 (where X are the independent variables and ' denotes the transpose)? Or is the singularity handled in some other way? Thank you! Best

[R] tukey HSD intervals

2008-01-24 Thread LA SPINA, MICHELANGELO
Hello everybody! I've just drawn an interaction plot between two factors, and I would like also to draw the Tukey HSD intervals, but I only was able to draw sd arrows. How I can draw that with R? Thank you very much and many thanks for your advices. Regards ___

[R] Printing large number

2008-01-24 Thread alex lam (RI)
Dear R users, Just a quick question, how do I prevent 10 printed as 1e+05 when I print it into a file? Thanks, Alex Alex C. Lam Roslin Institute (Edinburgh) Midlothian EH25 9PS United Kingdom Tel: +44 131 5274471 Roslin Institute is a company lim

Re: [R] latex{Hmisc} cannot find xdvi on MAC OS X

2008-01-24 Thread Kevin E. Thorpe
Kevin E. Thorpe wrote: > Charles C. Berry wrote: >> On Wed, 23 Jan 2008, Kevin E. Thorpe wrote: >> >>> Frank E Harrell Jr wrote: Charles C. Berry wrote: > On Wed, 23 Jan 2008, Frank E Harrell Jr wrote: > >> Kevin E. Thorpe wrote: >>> Kevin E. Thorpe wrote: Gabor Grothe

[R] Memory problem

2008-01-24 Thread Yoni Stoffman
Hi All, There is something I don't quite understand about R memory management. I have the following function function (AdGroupId) { print(memory.size()) channel <- odbcConnect("RDsn", uid = "", case = "tolower", pwd = "xx") Tree1 <- sqlQuery(channel, "exec SelectAdg

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