Re: [Rd] Unexpected source() behavior in R-devel

2006-09-03 Thread Peter Dalgaard
session. Of course, with 20/20 hindsight, I should have taken the core dump option... > > Possible actions: > > 1: abort (with core dump) > > 2: normal R exit > > 3: exit R without saving workspace > > 4: exit R saving workspace -- O__ Peter Dalgaard

Re: [Rd] Unexpected source() behavior in R-devel

2006-09-04 Thread Peter Dalgaard
nce, and I couldn't even reproduce it in 2.3.1. So there might and might not be a bug, but in any case we have no handle on it... -- O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K (*) \(*) -- Un

[Rd] Start of release process for R 2.4.0

2006-09-04 Thread Peter Dalgaard
useful before release than after, so please do what you can to check things out. This goes especially for those of you with uncommon platforms. -- O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 C

Re: [Rd] ISwR (PR#9204)

2006-09-05 Thread Peter Dalgaard
f you know of a problem with this > package. Installs happily here. You do need to give more information about which commands you tried and what the responses were. Which version of R, which repository, etc. (Expect to see a couple of acidic notes about posting bug reports prematurely.

Re: [Rd] JPEG struct mismatch on Intel Macs (PR#9209)

2006-09-06 Thread Peter Dalgaard
ears to have been built with one version of the jpeg libraries and you have another version installed. Unless we have a compiler issue and one part is padding out to a multiple of 8 bytes. -- O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B c/ /'_ --- Dept. of Biosta

Re: [Rd] install.packages(,type="source") broken on Windows

2006-09-08 Thread Peter Dalgaard
generic issue in that available.packages has a configure.args argument which is passed on to --configure-args in the INSTALL script: The Windows INSTALL doesn't understand the argument since configure doesn't work on Windows. However, things should work when no such arguments are passed.) --

Re: [Rd] [R] function changes argument (PR#9216)

2006-09-11 Thread Peter Dalgaard
plication down the line, but not invariably so. I suspect that the only reason it isn't what currently happens is that we have forgotten to diddle the NAMED flag in the implementation of for(), in the same way as is done for "<-". -- O__ Peter Dalgaard Øster Fa

Re: [Rd] Question about substitute() and function def

2006-09-15 Thread Peter Dalgaard
er than function arguments, so I suppose we could change the behaviour (special-casing calls to `function` is an alternative). Luke? To wit: > mode(quote(function(x)1)[[1]]) [1] "name" > mode(quote(function(x)1)[[2]]) [1] "pairlist" > mode(quote(function(x)1)[[3]]) [1] &qu

Re: [Rd] Ice cream flavor metaphor in statistical computing

2006-09-15 Thread Peter Dalgaard
t; > http://dictionary.reference.com/search?q=plain-vanilla It is unclear from my records of R-core mails at the time what the decision process, if any, might have been, but terms like "vanilla S" (AT&T S as opposed to S-PLUS) were being bandied about. The option --va

Re: [Rd] Legend frame error (PR#9236)

2006-09-18 Thread Peter Dalgaard
se. And if I'm not mistaken, there's an additional issue: If the x axis is reversed, an explicit text.width setting should in fact be negative. -- O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 C

Re: [Rd] Using \u2030 in plot axis label -> stack smashing

2006-09-19 Thread Peter Dalgaard
If you play with gram.y, you need make sure rebuilding takes place, most easily by configuring in maintainer-mode. The fundamental issue is that there are some build tools we don't want to assume that everybody has (here: YACC/Bison), and also that build times don't usually survive SVN checkouts,

Re: [Rd] mgcv in R-2.4.0.alpha

2006-09-20 Thread Peter Dalgaard
52;LC_NUMERIC=C;LC_TIME=Spanish_Bolivia.1252 > > attached base packages: > [1] "methods" "stats" "graphics" "grDevices" "utils" "datasets" > [7] "base" > > Kjetil B Halvorsen If a straight library(mg

Re: [Rd] Sweave processes \Sexpr in commented LaTeX source (2.3.1patched and 2.4.0)

2006-09-20 Thread Peter Dalgaard
ments, we would need a some kind of > parser for LaTeX, which we currently don't need ... and starting to > parse LaTeX would also open a can of worms of possible requests (what > to do with Sexpr inside verbatim, etc, etc). ..not to mention TeX comments inside Sexpr (e.g. %*%...

Re: [Rd] Problem with tcltk package: tclfile.dir missing?

2006-09-24 Thread Peter Dalgaard
change doesn't automatically work on functions with a dot in them. tclfile.tail is the only other case that I can spot. Best to fix in the obvious way at the current stage, but I wonder whether it wouldn't have been better just to have tclfile("dir", myfile) -- or for that

Re: [Rd] sprintf behavior (PR#9250)

2006-09-25 Thread Peter Dalgaard
the concept of escape characters. > "\\p\n" [1] "\\p\n" > cat("\\p\n") \p > nchar("\\p\n") [1] 3 Also, do not report things as bugs before you are 100% certain that they are bugs. -- O__ Peter Dalgaard Øster Farimagsgade 5

Re: [Rd] sprintf behavior (PR#9250)

2006-09-25 Thread Peter Dalgaard
Peter Dalgaard <[EMAIL PROTECTED]> writes: > This is *not* a bug (it is also not a FAQ, although I'm beginning to > think it should be). Just to be clear: I'm aware of FAQ 7.8, but it is about file names. Issue is whether we need a generic "backslashes in text s

Re: [Rd] Warning on backslash sequences (was sprintf behavior)

2006-09-28 Thread Peter Dalgaard
quotes acceptable for code regardless then that would > help in this instance. deparse() would be more to the point, would it not? -- O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K (*) \(*) -- Universi

Re: [Rd] Warning on backslash sequences (was sprintf behavior)

2006-09-28 Thread Peter Dalgaard
Yes, but there be devils lurking in there. I think you do in general need to know what the other language is. Take a look at shQuote(), for instance. (Why, BTW, does that not simply "escape" single quotes using '"'"' instead of switching to double-quotes

Re: [Rd] Strange behaviour of the [[ operator

2006-09-30 Thread Peter Dalgaard
n > m[j=2,i=] [1] 2 4 However, what would the argument names be in the >2-dim case? i, j are used only in help("[") and that page is quite specific about explaining that named matching doesn't work. -- O__ Peter Dalgaard Øster Farimagsgade 5,

Re: [Rd] stack imbalance in contour

2006-10-01 Thread Peter Dalgaard
appen only in the all z equal case (the value 3e10 is not magic - any nonzero z will do). We should get it tracked down, but it's not worth breaking the code freeze for 2.4.0 over. -- O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B c/ /'_ --- Dept. of Biostatist

Re: [Rd] Error in X11 (PR#9272)

2006-10-03 Thread Peter Dalgaard
n X11() : could not find any X11 fonts > Check that the Font Path is correct. > > This occurs at every time and also if I type demo(graphics). This appear at > both > native English language-pack or German language-pack delivered with ubuntu > 6.10. The most obvious guess is tha

Re: [Rd] Status of R 2.4.0 in svn repository and R-Admin manual

2006-10-04 Thread Peter Dalgaard
quite a bit and reduces the risk of last-minute surprises. It also opens up the "trunk" for new development a bit earlier. So 2.4.x alpha/beta/RC//Patched releases are now all cut from the same branch. A side effect was that the branch name "x-y-patches" would be a misnomer

Re: [Rd] Status of R 2.4.0 in svn repository and R-Admin manual

2006-10-04 Thread Peter Dalgaard
Gavin Simpson <[EMAIL PROTECTED]> writes: > On Wed, 2006-10-04 at 15:03 +0200, Peter Dalgaard wrote: > > Gavin Simpson <[EMAIL PROTECTED]> writes: > > > > > Dear list, > > > > > > I have been using and testing the alpha/betas of R 2.4.0,

Re: [Rd] Last R-devel snapshot is an empty tarball

2006-10-05 Thread Peter Dalgaard
instabilities... -- O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL PROTECTED])

Re: [Rd] Last R-devel snapshot is an empty tarball

2006-10-05 Thread Peter Dalgaard
Seth Falcon <[EMAIL PROTECTED]> writes: > Peter Dalgaard <[EMAIL PROTECTED]> writes: > > Herve Pages <[EMAIL PROTECTED]> writes: > > > >> Dear list, > >> > >> The last R-devel snapshot (2006-10-03) is an empty tarball: > >>

Re: [Rd] [R] [R-pkg] New packages pmg, gWidgets, gWidgetsRGtk2

2006-10-08 Thread Peter Dalgaard
Peter Dalgaard <[EMAIL PROTECTED]> writes: > [EMAIL PROTECTED] writes: > > > Finally, for some reason I'm trying to track down, under Windows, pmg > > is crashing when a cairoDevice graphics device is being closed. This > > affects the plotnotebook and the La

Re: [Rd] nls function does not use subset argument (PR#9290)

2006-10-11 Thread Peter Dalgaard
density ~ SSlogis(log(conc), Asym, xmid, scal) data: DNase Asym xmid scal 2.345180 1.483090 1.041455 residual sum-of-squares: 0.004789569 -- O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph.

Re: [Rd] Installation fails on FreeBSD (PR#9293)

2006-10-12 Thread Peter Dalgaard
sed this before and come down on the side that if the user or the system adminstrator sets things up so that there are things that users cannot do by default (such as running arbitrary downloaded scripts), then it is not our business to fix it behind their backs.] > ERROR: configuration f

Re: [Rd] error in lme4 for R 2.4.0 (PR#9297)

2006-10-14 Thread Peter Dalgaard
t of class > "lmer" The convention is that bugs in contributed packages should be reported to the maintainer, not r-bugs. Did you reinstall the package for 2.4.0? -- O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B c/ /'_ --- Dept. of Biostatistics

Re: [Rd] PR#9295

2006-10-16 Thread Peter Dalgaard
in as code? > > Dan > > > > > Daniel E. Platt > Bioinformatics and Pattern Discovery > IBM T. J. Watson Research Center > Yorktown Hgts, NY 10598 > (914)945-1388 > [[alternative HTML version deleted]] > > ___

Re: [Rd] Warnings about unrecognized escapes in Rd

2006-10-18 Thread Peter Dalgaard
happening everywhere or only in example sections, formulas or...? -- O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~~

Re: [Rd] bug in rect (PR#9307)

2006-10-19 Thread Peter Dalgaard
er <- NA } so it requires non-default density and angle to bite. The code should probably read ... if(!is.na(border) && is.logical(border)) ... -- O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B c/ /'_ --- Dept. of Biostatistics PO Box 209

Re: [Rd] as.missing

2006-10-24 Thread Peter Dalgaard
efault > > > > > > What would be nice to be able to do is to have a simple way for f() to > > act just like g() does. > > > Is this what you want? > > > f <- function(fnodef, fdef=NULL) { > + g()} > > f() > gnodef is missing >

Re: [Rd] Cook's Distance in GLM (PR#9316)

2006-10-24 Thread Peter Dalgaard
oints > greater than 1, none of which could be identified in the output of the > function. Hmm, yes. A good guess is that the contour levels need to be modified by a dispersion factor. The plot is much more consistent with cooks.distance(glm.D93,dispersion=5.129/4 ) -- O__ Pet

Re: [Rd] sourcing dput output

2006-10-25 Thread Peter Dalgaard
ot;all") > source("/tmp/iris.R") > dput(BOD, file = "/tmp/BOD.R",control="all") > source("/tmp/BOD.R") > Happy as a clam... > R.version.string [1] "R vers

Re: [Rd] sourcing dput output

2006-10-25 Thread Peter Dalgaard
possible object, but that is a bit late to fix.] > 2. what is the difference between dput and dump supposed to be > anyways? They are mostly the same, dump is primarily for storage, dput might also be for display. Notice that dump works for multiple objects since it also stores variable

Re: [Rd] NA handling in as.character applied to a list

2006-10-25 Thread Peter Dalgaard
ot;all") structure(list(a = NA, b = NA, c = as.integer(NA)), .Names = c("a", "b", "c")) > sapply(v,mode) a b c "character" "logical" "numeric" -- O__ Peter Dalgaard Øste

Re: [Rd] Error: invalid multibyte string

2006-10-26 Thread Peter Dalgaard
parse, but not print or deparse: > x<-parse(text='"\\x80"') > x Error: invalid multibyte string > z <- deparse(x) Error in deparse(x) : invalid multibyte string > cat(x[[1]]) �> (the last line has a funny little cedilla-like symbol in pos 1) -- O_

Re: [Rd] as.missing

2006-10-27 Thread Peter Dalgaard
#x27;re asking for is essentially dynamic scoping for missing arguments: you'd have to backtrack along the call chain to find the first instance where x is either given a value or has a default. This sounds messy. -- O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B c/ /'

Re: [Rd] as.missing

2006-10-27 Thread Peter Dalgaard
Paul Gilbert <[EMAIL PROTECTED]> writes: > Peter Dalgaard wrote: > > >Paul Gilbert <[EMAIL PROTECTED]> writes: > > > > > >>>I.e., when x is missing in g, and g calls f(3,x), f will use its > >>>default value for x. > >>>

Re: [Rd] as.missing

2006-10-27 Thread Peter Dalgaard
which probably means that promises need to be three-pronged structures (value, expression, default expression), or that you have to keep the formal argument list around in the evaluation frame. > Best, > > luke > > On Fri, 27 Oct 2006, Paul Gilbert wrote: > &g

Re: [Rd] sources of 2.4.0 patched

2006-10-27 Thread Peter Dalgaard
somehow failing on the machine that does the builds (i.e. it just keeps on building from the 2006-10-03 checkout). -- O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K (*) \(*) -- University of Copenhagen

Re: [Rd] sources of 2.4.0 patched

2006-10-29 Thread Peter Dalgaard
none from the 28th. -- O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL PROTECTED])

Re: [Rd] interactive flag unix

2006-10-30 Thread Peter Dalgaard
(Perhaps we need an "old" category). There are several things wrong with the bug tracker and we have reasons to want to replace it at some point, but it is working and we do use it. -- O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B c/ /'_ --- Dept. of Bio

[Rd] lme4 install, was Re: [R] Which executable is associated with R CMD INSTALL?

2006-10-31 Thread Peter Dalgaard
2c -lm -lgcc_s local_stubs.o(.text+0x0): In function `M_numeric_as_chm_dense': /home/bs/pd/tmp/lme4/src/Matrix_stubs.c:420: multiple definition of `M_numeric_as_chm_dense' Matrix_stubs.o(.text+0x0):/home/bs/pd/tmp/lme4/src/Matrix_stubs.c:420: first defined here local_stubs.o(.text

Re: [Rd] 'make check' fails on d-p-q-r-tests (PR#9326)

2006-10-31 Thread Peter Dalgaard
L > PROTECTED];LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;[EMAIL > PROTECTED];LC_IDENTIFICATION=C You need to be more specific (yes, it is unfortunate that we cannot extract all details about Linuxen from the Version: listing). Which distribution, did you compile youself or use a binary, and if the f

Re: [Rd] 'make check' fails on d-p-q-r-tests (PR#9326)

2006-10-31 Thread Peter Dalgaard
Peter Kleiweg <[EMAIL PROTECTED]> writes: > Peter Dalgaard schreef op de 31e dag van de wijnmaand van het jaar 2006: > > > [EMAIL PROTECTED] writes: > > > > > 'make check' fails on d-p-q-r-tests: > > ... > > > --please do not edit the

Re: [Rd] 'make check' fails on d-p-q-r-tests (PR#9326)

2006-10-31 Thread Peter Dalgaard
Peter Kleiweg <[EMAIL PROTECTED]> writes: > Peter Dalgaard schreef op de 31e dag van de wijnmaand van het jaar 2006: > > > Peter Kleiweg <[EMAIL PROTECTED]> writes: > > > > > Peter Dalgaard schreef op de 31e dag van de wijnmaand van het jaar 2006:

Re: [Rd] Syntax Error in Rcmd check on Windows

2006-10-31 Thread Peter Dalgaard
ax error in: > "a=list( 149.126, 0.001, 0.001, > " 8.737, 0.001, 0.001 ) ) > Execution halted It's a longshot, but could some funny characters have crept in around "initDia"?? (There's a way to open it

Re: [Rd] data.entry(), de() fail in FC6-x86_64

2006-11-03 Thread Peter Dalgaard
on() NULL > options(STERM='iESS', editor='emacsclient') > > > > > > > c <- c(1,2,3,4) > > de(c) > *** buffer overflow detected ***: /usr/lib64/R/bin/exec/R terminated Or, fix(airquality) suffices to reproduce this. -- O__ ---

Re: [Rd] eval(match.call()) (PR#9339)

2006-11-03 Thread Peter Dalgaard
> > and my version of R was installed using yum from the fedora repositories. Ah, thanks. Sufficient information for once... -- O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K (*) \(*) -

Re: [Rd] eval(match.call()) (PR#9339)

2006-11-03 Thread Peter Dalgaard
Bill Dunlap <[EMAIL PROTECTED]> writes: > On Fri, 3 Nov 2006 [EMAIL PROTECTED] wrote: > > > > > On Fri, 2006-11-03 at 21:15 +0100, Peter Dalgaard wrote: > > > > > > x <- quote(match.call()) > > > > > > eval(x) > > >

Re: [Rd] lme4 install, was Re: [R] Which executable is associated with R CMD INSTALL?

2006-11-06 Thread Peter Dalgaard
"Douglas Bates" <[EMAIL PROTECTED]> writes: > On 31 Oct 2006 12:05:21 +0100, Peter Dalgaard <[EMAIL PROTECTED]> wrote: > > > > [move to r-devel, put maintainer in loop] > > > > Patrick Connolly <[EMAIL PROTECTED]> writes: > > >

Re: [Rd] memory issues with new release (PR#9344)

2006-11-06 Thread Peter Dalgaard
be a bug, or maybe just R requiring more memory to run than previously. -- O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918

Re: [Rd] memory issues with new release (PR#9344)

2006-11-06 Thread Peter Dalgaard
rmative that there is a user who has a problem which (just?) fitted in available memory in a previous version, but doesn't anymore. > > On 06 Nov 2006 18:20:33 +0100, Peter Dalgaard <[EMAIL PROTECTED]> > wrote: > > > > [EMAIL PROTECTED] writes: > > > > &

Re: [Rd] memory issues with new release (PR#9344)

2006-11-06 Thread Peter Dalgaard
sic data analyses, > > > i would > > > label this as a bug. if this memory issue was mentioned in the > > > documentation, then i apologize. this email was clearly not well > > > received, > > > so if there is a more appropriate place to post the

Re: [Rd] memory issues with new release (PR#9344)

2006-11-06 Thread Peter Dalgaard
much we can do. If it is orders of magnitude, then we may have a real bug (or not: sometimes we fix bugs resulting from things not being duplicated when they should have been, the fixed code then uses more memory than the unfixed code.) > Thanks, > Derek > > > > On 06 Nov 2

Re: [Rd] gc()$Vcells < 0 (PR#9345)

2006-11-06 Thread Peter Dalgaard
00) > > z<-matrix(nrow=44000,ncol=48000) > > gc() > used(Mb) gc trigger(Mb) max used(Mb) > Ncells 177801 9.5 40750021.8 3518.7 > Vcells -1126881981 24170.6 NA 24173.4 NA 24170.6 Sorry, can't

Re: [Rd] Retrieving function name

2006-11-09 Thread Peter Dalgaard
y) Thing is, functions do not "have names", they can be anonymous or assigned to multiple names, or be passed as arguments. -- O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 C

Re: [Rd] Failing to install R-2.4.0 on FC4

2006-11-09 Thread Peter Dalgaard
astle.edu.au/R/devel/06/01/3699.html) but the proposed > solution did not work for me. > > Any suggestion? Well if nothing else works, there's a Fedora Extra RPM for R-2.4.0... http://fedoraproject.org/extras/4/i386/repodata/repoview/R-0-2.4.0-2.fc4.1.html The symptoms suggest that you can

Re: [Rd] unwarranted warning from hist.default (PR#9356)

2006-11-10 Thread Peter Dalgaard
used and the > warning is wrong --- is a bug. As I read the code, the purpose is to warn people if they supply plot arguments (density, xlim, ylim,) while plot=FALSE. There's a stop list coded by nf <- nf[is.na(match(nf, c("x", "breaks", "freq"

Re: [Rd] String to list and visa versa

2006-11-14 Thread Peter Dalgaard
t; I > basically don't care upon the string representation, only that I can > manipulate the list as a string and then reparse it back to a valid list > object. You might want to investigate deparse() and parse(). [*] http://www.johnhannah.net/mccallum.html -- O__

Re: [Rd] save objects from function (PR#9365)

2006-11-15 Thread Peter Dalgaard
t;- 1:10 > funSave.1(a) > load("a.1.dat") > a [1] 1 2 3 4 5 6 7 8 9 10 > a <- 1:10 > funSave.2(b) Error in funSave.2(b) : object "b" not found > load("a.2.dat") Error in readChar(con, 5) : cannot open the connection In addition: Wa

Re: [Rd] Bug in tkStartGUI in package tcltk (PR#9396)

2006-11-28 Thread Peter Dalgaard
[EMAIL PROTECTED] wrote: > Full_Name: Jeff Hallman > Version: 2.4.0 > OS: Linux > Submission from: (NULL) (132.200.32.34) > > > When the R Internals manual was added to the list of manuals in tkStartGUI, > whoever did it left an extra comma in the code. This creates an ugly warning > when tkStartG

Re: [Rd] Error 1 : undefined first referenced symbol

2006-11-29 Thread Peter Dalgaard
/main' > > gmake[2]: *** [R] Error 2 > > gmake[2]: Leaving directory > > `/usr/local/R_HOME/R-2.4.0/src/main' > > gmake[1]: *** [R] Error 1 > > gmake[1]: Leaving directory `/usr/local/R_HOME/R-2.4.0/src' > > gmake: *** [R] Error 1 > > &

Re: [Rd] Web site link problems (PR#9401)

2006-11-30 Thread Peter Dalgaard
[EMAIL PROTECTED] wrote: > Full_Name: Ross Boylan > Version: N/A > OS: Linux > Submission from: (NULL) (198.144.201.14) > > > 1. http://www.r-project.org/posting-guide.html includes > "Paul Johnson's R tips page is a organized collection of how to do things in > R, > with many questions and tips c

[Rd] R 2.4.1 scheduled for December 18

2006-12-01 Thread Peter Dalgaard
lease, please do try out the prereleases. Particularly so if your setup is not mainstream OS-wise or configuration-wise. -- O__ ---- Peter Dalgaard Øster Farimagsgade 5, Entr.B c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K (*) \(*) -- University of

Re: [Rd] tcltk::tk_select.list has bad width (PR#9410)

2006-12-06 Thread Peter Dalgaard
[EMAIL PROTECTED] wrote: > Full_Name: Jeff Hallman > Version: 2.4.0 > OS: Linux > Submission from: (NULL) (132.200.32.34) > > > The window put up by tcltk::tk_select.list appears to be of fixed width (20 > chars), and is not wide enough to accomodate strings longer than 20 characters > long. This

[Rd] Prerelease tarballs of R 2.4.1

2006-12-07 Thread Peter Dalgaard
...are being built every morning (CET time) and made available at http://cran.r-project.org/src/base-prerelease/ -peter __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] Matplot does not work with x being POSIXt class (PR#9412)

2006-12-07 Thread Peter Dalgaard
[EMAIL PROTECTED] wrote: > Hi, > > Matplot works with x being Date class but not POSIXt. Here is the > example with R version 2.5.0 Under development (unstable) (2006-12-06 > r40129) > > Example: > > x <- Sys.Date() - c(1:10) > y <- cbind(1:10, 10:1) > class(x) > ## [1] "Date" > matplot(x, y) > > x

Re: [Rd] Floating point maths in R

2006-12-09 Thread Peter Dalgaard
Tom McCallum wrote: > Hi, > > I am not sure if this is just me using R (R-2.3.1 and R-2.4.0) in the > wrong way or if there is a more serious bug. I was having problems > getting some calculations to add up so I ran the following tests: > > Please read FAQ 7.31 and the reference therein.

Re: [Rd] [R] Segfault in pure R code

2006-12-12 Thread Peter Dalgaard
reserve the bug. Rebuild anything and the symptom disappears, but the bug will still be there. So keep the R binary, the script, and the .RData file around. Some ideas: Is it reproducible on other machines? Do you have valgrind installed? Notes for using it are on http://developer.r-proje

Re: [Rd] Curious finding in MASS:::confint.glm() tied to eval()

2006-12-16 Thread Peter Dalgaard
Marc Schwartz wrote: > Hi all, > > Has anyone had a chance to look at this and either validate my finding > or tell me that my brain has turned to mush? > > Either would be welcome... :-) > > Scoping issues can turn anyones brain to mush! This sort of thing easily happens with code ported from

Re: [Rd] Error compiling on HP-UX

2006-12-18 Thread Peter Dalgaard
nd the socket.h files on the web: > > http://azug.minpet.unibas.ch/~pascal/R/config.log > http://azug.minpet.unibas.ch/~pascal/R/config.h > http://azug.minpet.unibas.ch/~pascal/R/socket.h > > Is there any further information I can provide > The gcc version might be helpful >

Re: [Rd] R windows crash (PR#9426)

2006-12-21 Thread Peter Dalgaard
[EMAIL PROTECTED] wrote: > Full_Name: Robert Denham > Version: R-2.4.1 > OS: Windows Xp > Submission from: (NULL) (61.88.57.1) > > > R gui exits without warning when I run a function which has an argument with a > default that is not found. > > This was a result of an error in a function I wrote,

Re: [Rd] R windows crash (PR#9426)

2006-12-21 Thread Peter Dalgaard
Luke Tierney wrote: > On Thu, 21 Dec 2006, [EMAIL PROTECTED] wrote: > > >> Prof Brian Ripley wrote: >> >>> On Thu, 21 Dec 2006, Peter Dalgaard wrote: >>> >>> [...] >>> >>> >>> >>>> This seems re

Re: [Rd] substitute creates an object which prints incorrectly (PR#9427)

2006-12-22 Thread Peter Dalgaard
[EMAIL PROTECTED] wrote: > The function "substitute" seems to fail to make a genuine > substitution, although the printed verision seems fine. Here is an > example. > > >> m <- substitute(Y <- function(x) FUN(x+1), >> > + list(Y = as.name("y"), FUN = as.name("sin"))) > >> m >> > y

Re: [Rd] substitute creates an object which prints incorrectly (PR#9427)

2006-12-23 Thread Peter Dalgaard
be dangerous in this way, both in the help informaton for options() > and for substitute(). > > ? > > Bill Venables. > > -Original Message- > From: Peter Dalgaard [mailto:[EMAIL PROTECTED] > Sent: Friday, 22 December 2006 9:47 PM > To: Venables, Bill (CMIS, Cleve

Re: [Rd] help for memory problem with 64-bit machines

2007-01-05 Thread Peter Dalgaard
library(subselect) >>> data(swiss) >>> anneal(cor(swiss),2,3,nsol=4,niter=10,criterion="RM") >>> >> *** caught segfault *** >> address 0xb03f38dc, cause 'memory not mapped' >> >> Traceback: >> 1: .Fortran("anneal", as.integer(criterio), as.integer(p), >> as.double(as.vector(mat)), as.integer(kmin), a

Re: [Rd] subsetting matrix by subscript=0,x silently skips.

2007-01-18 Thread Peter Dalgaard
w. -- O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL PROTECTED])

Re: [Rd] Building R 2.4.1 on IRIX

2007-01-18 Thread Peter Dalgaard
dropping some of the -I directories in that cc command line, and submit the issue to the vendor if you get convinced that the issue is not actually an R one. If this is the case, your best hope is if you can make cc less picky about such redefinitions. -- O__ Peter Dalgaard Øs

Re: [Rd] R-bugs, was subsetting matrix by subscript=0, x silently skips.

2007-01-18 Thread Peter Dalgaard
Hin-Tak Leung wrote: > (I have taken off r-bug@, as multiple e-mails hitting r-bug@ probably > will result in multiple bug reports, knowing most mail server will > retry) > Actually, reports will fall into a deep dark hole The home dir of r-bugs had gone AWOL and this contains the forwardi

Re: [Rd] C vs. C++ as learning and development tool for R

2007-01-20 Thread Peter Dalgaard
Roger Bivand wrote: > Just [use] MinGW like R [does], following the guides to the letter gets you > there like > marked stones across a marsh. Leaving the path usually gets you at best > neck deep in the mire, alternatively just bubbles. That's the strongest contender for a space in the fortune f

Re: [Rd] is it necessary to always register C routines with R_registerRoutines?

2007-01-24 Thread Peter Dalgaard
gt;> I have adapted the example from page 77 of r-exts.pdf, however, it crashes >> R. >> > > Page numbers depend on what paper it is formatted for, but on A4 this is > nothing like the example on page 77. > > p.72 in the current PDF version on CRAN was probably

Re: [Rd] Error in loadNamespace(name) (PR#9464)

2007-01-25 Thread Peter Dalgaard
_AU.UTF-8;LC_NUMERIC=C;LC_TIME=en_AU.UTF-8;LC_COLLATE=en_AU.UTF-8;LC_MONETARY=en_AU.UTF-8;LC_MESSAGES=en_AU.UTF-8;LC_PAPER=en_AU.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_AU.UTF-8;LC_IDENTIFICATION=C >> >> Search Path: >> .GlobalEnv, package:stats, package:graphics,

[Rd] R 4.4.2 scheduled for October 31

2024-10-11 Thread peter dalgaard
Full schedule is available on developer.r-project.org (pending update from SVN). -- Peter Dalgaard, Professor, Center for Statistics, Copenhagen Business School Solbjerg Plads 3, 2000 Frederiksberg, Denmark Phone: (+45)38153501 Office: A 4.23 Email: pd@cbs.dk Priv: pda...@gmail.com

[Rd] R 4.4.2 is released

2024-10-31 Thread peter dalgaard
s://cran.r-project.org/src/base/R-4/R-4.4.2.tar.xz or wait for it to be mirrored at a CRAN site nearer to you. Binaries for various platforms will appear in due course. (The Mac binaries will be delayed for a couple of days because the maintainer is traveling.) For the R Core Team, Peter Dalgaard

Re: [Rd] R test suite LAPACK error with AOCL

2025-01-22 Thread peter dalgaard
ib_LP64/libblis.so.5.0.0 > LAPACK: /sw/numerics/aocl/5.0.0/gcc/lib_LP64/libflame.so; LAPACK version > 3.11.0 > ... > > > With Intel MKL instead of AOCL the test suite passes without errors. But this > is an AMD system, so here I tend to prefer AOCL over MKL. > > Any ideas?

[Rd] R 4.4.3 scheduled for February 28

2025-02-13 Thread peter dalgaard
Full schedule is available on developer.r-project.org (pending update from SVN). -- Peter Dalgaard, Professor, Center for Statistics, Copenhagen Business School Solbjerg Plads 3, 2000 Frederiksberg, Denmark Phone: (+45)38153501 Office: A 4.23 Email: pd@cbs.dk Priv: pda...@gmail.com

Re: [Rd] [External] More precise documentation of on.exit() [when leaving function vs. "context"]

2025-02-15 Thread peter dalgaard
manual/R-lang.texi#L3755-L3757 >> >> __ >> R-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/r-devel >> > > -- > Luke Tierney > Ralph E. Wareham Professor of Mathematical Sciences > University o

[Rd] R 4.5.0 scheduled for April 11

2025-03-11 Thread peter dalgaard
Full schedule is available on developer.r-project.org (pending update from SVN). -- Peter Dalgaard, Professor, Center for Statistics, Copenhagen Business School Solbjerg Plads 3, 2000 Frederiksberg, Denmark Phone: (+45)38153501 Office: A 4.23 Email: pd@cbs.dk Priv: pda...@gmail.com

[Rd] R 4.4.3 is released

2025-02-28 Thread peter dalgaard
You can get the source code from https://cran.r-project.org/src/base/R-4/R-4.4.3.tar.gz https://cran.r-project.org/src/base/R-4/R-4.4.3.tar.xz or wait for it to be mirrored at a CRAN site nearer to you. Binaries for various platforms will appear in due course. For the R Core Team, Pete

[Rd] R 4.5.0 is released

2025-04-11 Thread peter dalgaard
s://cran.r-project.org/src/base/R-4/R-4.5.0.tar.gz https://cran.r-project.org/src/base/R-4/R-4.5.0.tar.xz or wait for it to be mirrored at a CRAN site nearer to you. Binaries for various platforms will appear in due course. For the R Core Team, Peter Dalgaard These are the checksums (md5 and SHA-25

Re: [Rd] should the top of doc/NEWS.3 mention doc/NEWS.Rd ?

2025-04-13 Thread peter dalgaard
ally have static copies of them installed. The help server in R may > generate them on the fly. > > Duncan Murdoch > > ______ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel -- Peter Dalgaard, Professor,

Re: [Rd] Request for comment: namespace resolution in terms(, specials=) [::, etc.]

2025-04-15 Thread peter dalgaard
ecials', so that >> specials = structure(c("s", "s"), package = c("", "mgcv")) >> would match calls s(...) and mgcv::s(...) separately. This attribute would >> be >> preserved by the 'specials' component of the '

[Rd] R 3.4.4 scheduled for March 15

2018-02-26 Thread Peter Dalgaard via R-devel
Full schedule available on developer.r-project.org (pending auto-update from SVN) -- Peter Dalgaard, Professor, Center for Statistics, Copenhagen Business School Solbjerg Plads 3, 2000 Frederiksberg, Denmark Phone: (+45)38153501 Office: A 4.23 Email: pd@cbs.dk Priv: pda...@gmail.com

[Rd] R 3.5.0 scheduled for April 23

2018-03-20 Thread Peter Dalgaard via R-devel
Full schedule available on developer.r-project.org (pending auto-update from SVN) -- Peter Dalgaard, Professor, Center for Statistics, Copenhagen Business School Solbjerg Plads 3, 2000 Frederiksberg, Denmark Phone: (+45)38153501 Office: A 4.23 Email: pd@cbs.dk Priv: pda...@gmail.com

Re: [Rd] R Lapack – why a subset?

2018-03-26 Thread Peter Dalgaard via R-devel
thub.com/wch/r-source/commit/98acd96f22eb795a933879c0d3f740e802855473 > > [[alternative HTML version deleted]] > > ______ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel -- Peter Dalgaard, Professor, Center f

[Rd] R 3.5.1 scheduled for July 2

2018-06-06 Thread Peter Dalgaard via R-devel
Full schedule available on developer.r-project.org -- Peter Dalgaard, Professor, Center for Statistics, Copenhagen Business School Solbjerg Plads 3, 2000 Frederiksberg, Denmark Phone: (+45)38153501 Office: A 4.23 Email: pd@cbs.dk Priv: pda...@gmail.com

[Rd] Surprise with plot.lm()

2018-10-09 Thread Peter Dalgaard via R-devel
make, so it might be worth fixing, but how? -- Peter Dalgaard, Professor, Center for Statistics, Copenhagen Business School Solbjerg Plads 3, 2000 Frederiksberg, Denmark Phone: (+45)38153501 Office: A 4.23 Email: pd@cbs.dk Priv: pda...@gmail.com __ R-

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