Re: [Rd] R 2.5.0 refuses to print enough digits to recover exact floating point values

2007-05-23 Thread Uwe Ligges
Zack Weinberg wrote: > On 5/22/07, Uwe Ligges <[EMAIL PROTECTED]> wrote: >> Zack Weinberg wrote: >> > >> > I'd really appreciate some way of forcing R to print enough digits to >> > represent every possible IEEE double value. I would also argue t

Re: [Rd] How to correctly write a package?

2007-05-28 Thread Uwe Ligges
ably use svn, cvs or some other version control system and so have the sources therein. They are simply updating the source code directly without using package.skeleton() after they once used it for a first skeleton of the package. Uwe Ligges > I have created package source using package.

Re: [Rd] setClass with a slot of RODBC

2007-06-05 Thread Uwe Ligges
[EMAIL PROTECTED] wrote: > > Hi - I tried to get some answer before but there seems to have no one > response. My question is that I have a class like below definition: Don't forget that "RODBC" is not an S4 but an S3 class, hence you have to declare it: setOldCla

Re: [Rd] putting binary files in a package

2007-06-23 Thread Uwe Ligges
Ben Bolker wrote: >I have some binaries I would like to distribute with a package > (I am not the original author; I have the source code but can't distribute > it because it contains _Numerical Recipes_ code. The long-term > solution is to replace the code with new code written in R, or > i

Re: [Rd] triax.points() from package plotrix

2007-07-21 Thread Uwe Ligges
Remarks, bug reports and feature requests on contributed packages should go to the corresponding package maintainer (CCing). Note that several developers of the > 1000 CRAN R packages do not read this mailing list. Thank you, Uwe Ligges Andreas Plank wrote: > Dear developers from p

[Rd] Windows builder: Package X did not pass R CMD check

2007-07-23 Thread Uwe Ligges
Dear package maintainers, due to some hicc up in my autobuilder, many CRAN package maintainers got a message about an error in their packages for R-2.5.1. Please ignore that one. My sincere apologies for spamming around, Uwe Ligges __ R-devel@r

Re: [Rd] Makefile for embedding OpenBUGS in R package

2007-08-06 Thread Uwe Ligges
running without "traps", I'd be happy to hear about it. Uwe Ligges Tobias Verbeke wrote: >> - Oorspronkelijk bericht - >> Van: Prof Brian Ripley [mailto:[EMAIL PROTECTED] >> Verzonden: maandag, augustus 6, 2007 03:46 PM >> Aan: 'Tobias Verbek

Re: [Rd] Sligthly OT Re: Makefile for embedding OpenBUGS in R package

2007-08-08 Thread Uwe Ligges
Hin-Tak Leung wrote: > Prof Brian Ripley wrote: >> OpenBUGS is distributed under GPL2, so this seems not to apply. >> It is distributed as source and as binaries: the difficulty is that it >> is written in Object Pascal for which a compiler is not readily available. > > Argh, I just thought of

Re: [Rd] errors in loading packages (PR#9839)

2007-08-10 Thread Uwe Ligges
=TRUE) ... and dependencies are installed automatically in recent version of R, so one reason more for a quick update! Uwe Ligges > or the equivalent checkbox in the UI. > > -G > > On Aug 10, 2007, at 1:02AM , Ken Beath wrote: > >> On 10/08/2007, at 5:14 AM, [EMAIL PROTECTED]

Re: [Rd] Sligthly OT Re: Makefile for embedding OpenBUGS in R package

2007-08-15 Thread Uwe Ligges
Tobias Verbeke wrote: > Hi Ben, > >> Tobias Verbeke businessdecision.com> writes: >> >>> The resulting package now allows for using an embedded OpenBUGS >>> on GNU/Linux without relying on WINE. Thanks to all for their helpful >>> comments. >> >> woo-hoo! this is great! Any chance that thi

Re: [Rd] Windows Vista Issues

2007-09-05 Thread Uwe Ligges
uot; to do so.) No, you can do it with your version as well, just start with the right privileges. There is not a single R-Vista issue here (and no R issue at all). All are problems of the user who has not read Windows Vista documentation. Uwe Ligges > I don'

Re: [Rd] Windows Vista Issues

2007-09-06 Thread Uwe Ligges
Dominick Samperi wrote: > Uwe Ligges wrote: >> There is not a single R-Vista issue here (and no R issue at all). All >> are problems of the user who has not read Windows Vista documentation. >> Uwe Ligges > Oh, and this probably explains why my previous two postings mys

Re: [Rd] gcc-sjlj

2007-09-11 Thread Uwe Ligges
gcc-4.2.1 is the default now. Uwe Ligges Kuhn, Max wrote: > Everyone, > > I'm running R CMD check on a package using the 2.6.0 alpha version: > >> sessionInfo() > R version 2.6.0 alpha (2007-09-09 r42809) > i386-pc-mingw32 > > locale: > LC_COLLA

Re: [Rd] "could not find function" in R CMD check

2007-09-12 Thread Uwe Ligges
Perhaps Namespace issues? But no further ideas. You might want to make your package available at some URL so that people can look at it and help... Uwe Ligges Ross Boylan wrote: > During R CMD check I get this: > ** building package indices ... > Error in eval(expr, envir, enclos) :

Re: [Rd] r cmd build

2007-09-16 Thread Uwe Ligges
ed to produce some help pages - temporarily). When hhc is not found at that place, just ignore it, the resulting .tar.gz should really be fine. Uwe Ligges > On 9/16/07, Duncan Murdoch <[EMAIL PROTECTED]> wrote: >> On 15/09/2007 10:27 PM, Gabor Grothendieck wrote: >>> On Wind

[Rd] contributed CRAN packages / Windows binaries for R-2.6.0

2007-09-25 Thread Uwe Ligges
maintainers whose packages fail under today's R-2.6.0 beta for Windows. So don't be surprised. Best wishes, Uwe Ligges __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] R-2.6.0 package check problems

2007-10-05 Thread Uwe Ligges
Robin Hankin wrote: > Hello > > > One of my packages, untb_1.3-2, passes R CMD check under > MacOSX (and apparently the systems used in the package check > summary page on CRAN) but fails with the following message on > R-2.6.0.tgz compiled last night on my (home) linux box. I hasten > to add

Re: [Rd] Package compile under Windows on 2.6.0

2007-10-09 Thread Uwe Ligges
It works for me up to that point, but I do not have the real Rtools setup running. So you have the I'd propose to start with a package that already passes checks on Windows. And then go the harder way to a package that shows problems ... Iago Mosqueira wrote: > Dear all, > > We are experienci

Re: [Rd] no visible binding

2007-10-12 Thread Uwe Ligges
Dear Roger, simply use quotes as in: model.extract(m, "response") Best, Uwe roger koenker wrote: > Could someone advise me about how to react to the message: > > * checking R code for possible problems ... NOTE > slm: no visible binding for global variable 'response' > > from R CMD check Sp

Re: [Rd] Error in Windows Vista, saving workspace...

2007-10-12 Thread Uwe Ligges
Do you have write permissions in the current working directory? I guess not. Uwe Ligges Filipe Santos wrote: > Dear all... > > I'm using R 2.6.0 in windows Vista. And I got the following error: > >> quit() > Save workspace image? [y/n/c]: y > Error in gzfi

Re: [Rd] Error on saving graphics as ps-files with R 2.6.0 (PR#9960)

2007-10-12 Thread Uwe Ligges
mailing list archives. I am really surprised that so many people are using the menu (and hence copying devices) rather than starting from a clean postscript device (which is always preferable). No developer does so I guess and nobody else seems to have looked into the alpha/bet

Re: [Rd] no visible binding

2007-10-12 Thread Uwe Ligges
Roger Bivand wrote: > On Fri, 12 Oct 2007, roger koenker wrote: > >> Could someone advise me about how to react to the message: >> >> * checking R code for possible problems ... NOTE >> slm: no visible binding for global variable 'response' >> >> from R CMD check SparseMwith >> * using R ver

[Rd] bug (?) in [.data.frame with matrix-like indexing

2007-10-14 Thread Uwe Ligges
-like indexing on data.frames, one logically-indexed dimension with only one value TRUE in it. It is not documented to work, but it did so in former versions of R. Is it a bug or withdrawn support? Uwe Ligges __ R-devel@r-project.org mailing list https

Re: [Rd] R crashes while printing variable read from read.delim() (PR#10366)

2007-10-24 Thread Uwe Ligges
eport on a recent version of R such as R-2.6.0 (even better R-patched or R-devel). We do not have "cdcr_flat_survival.dat". Hence we cannot reproduce. Thank you, Uwe Ligges > # results in stack overflow > > # bug reproduced in 2.4.1/linux and 2.5.1/windows... > > __

Re: [Rd] Saving Graphics File as .ps or .pdf (PR#10403)

2007-11-06 Thread Uwe Ligges
This has been reported several times before and has been fixed in R-patched some weeks ago. Uwe Ligges [EMAIL PROTECTED] wrote: > Full_Name: Jane L. Harvill > Version: 2.6.0 > OS: Microsoft Windows XP Professional, Version 2002, Service Pack 2 > Submission from: (NULL) (

Re: [Rd] colnames slow (PR#10470)

2007-11-26 Thread Uwe Ligges
'names' respectively, but the latter are preferred. and on my machine I get: system.time(names(x)) user system elapsed 0 0 0 Uwe Ligges > Sincerely, > > Tomas > > __ > R-devel@r-project.or

Re: [Rd] Levy (PR#10469)

2007-11-26 Thread Uwe Ligges
) > <- colnames(x)[qr$pivot] Why do you think that it is a bug in R (or a contributed packages) that you do not have the required amount of RAM in your machine? Uwe Ligges > __ > R-devel@r-project.org mailing list > https://stat.

Re: [Rd] x=.94 (PR#10529)

2007-12-27 Thread Uwe Ligges
Please do read the R FAQ: "Why doesn't R think these numbers are equal?" and before posting, you should have read the R FAQ: "What is a bug?" that points you to the former FAQ! Uwe Ligges [EMAIL PROTECTED] wrote: > I am using R Version 2.6.2007-11-23. I do no

Re: [Rd] readBin differences on Windows and Linux/mac

2007-12-31 Thread Uwe Ligges
Can you give a reproducible example, pelase? Uwe Ligges Sean Davis wrote: > I have been trying to use the gunzip function in the R.utils package. It > opens a connection to a gzfile, uses readBin to read from that connection, > and then uses writeBin to write out the raw data to a

Re: [Rd] readBin differences on Windows and Linux/mac

2008-01-01 Thread Uwe Ligges
/GSE1/GSE1_series_matrix.txt.gz','test.txt.gz' > > <ftp://ftp.ncbi.nih.gov/pub/geo/DATA/SeriesMatrix/GSE1/GSE1_series_matrix.txt.gz','test.txt.gz'>) > gunzip('test.txt.gz') > > Under windows, this results in the error reported belo

Re: [Rd] readBin differences on Windows and Linux/mac

2008-01-01 Thread Uwe Ligges
.txt.gz") > ftp data connection made, file length 918804 bytes > opened URL > downloaded 897 Kb >> file.info("test2.txt.gz")$size > [1] 918804 > >> gunzip("test.txt.gz") > Error in readBin(inn, what = raw(0), size = 1, n = BFR.SIZE) : > ne

Re: [Rd] Updating library

2008-01-19 Thread Uwe Ligges
hits=-2.6 tests=BAYES_00 X-USF-Spam-Flag: NO Peter Dalgaard wrote: > Prof Brian Ripley wrote: >> You need to use 'Run as admininistrator' for just the session updating >> those packages (assuming you installed R with administrator privileges and >> are running it without: you did not say). >>

Re: [Rd] r-release Windows x86_64

2008-02-04 Thread Uwe Ligges
Paul Gilbert wrote: > I was just looking at the daily checks and it seems the "r-release > Windows x86_64 (32-bit)" column is running R2.6.0. Is that correct? Paul, well, currently it is not checking daily, but new checks are done in R-2.6.2 RC. I'll rerun all check today and tomorrow and w

Re: [Rd] 'Esc' crashes R in MacOX 10.5.2 (PR#10839)

2008-02-24 Thread Uwe Ligges
in "Force Quit" to use the program > again. ... and this is the xxx-th bug report about it! Please check the archives on solutions. Uwe Ligges __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] Check errors using R2.6.2

2008-03-10 Thread Uwe Ligges
[3]:gcc-sjlj: Command not found > > etc. > > my gcc is version 3.4.2 > > I'm using Windows XP. > > Any thoughts? Yes: Upgrade gcc as the R Administration and Installation manual suggets. R >= 2.6.0 is built under gcc-4.2.1. Uwe Ligges > > thanks! &g

[Rd] Win-builder offline

2008-03-18 Thread Uwe Ligges
FYI: the win-builder machine will be offline for roughly 24 hours due to some hardware failure. Best, Uwe Ligges __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] problem with 'install.packages'

2008-03-23 Thread Uwe Ligges
Spencer Graves wrote: > Hi, All: > > Is there a way to identify whether any users are using a > particular package in a shared network R installation? > > I ask, because we have such a multiple-user installation and when > I tried to install a package using Rgui that was in use by

Re: [Rd] DLL problem

2008-03-26 Thread Uwe Ligges
, PACKAGE = > "base") : > C symbol name "R_lazyLoadDBfetch" not in DLL for package "base" I guess your version of gtools has been compiled for R < 2.6.0. Please start R without loading packages and run update.packages(checkBuilt = TRUE) Then try

Re: [Rd] tests Rin and Rout

2008-04-05 Thread Uwe Ligges
ng .Rin, I check all the package you point, but none of them use it. > Does someone know a package using .Rin ? I haven't looked at any package, but see the R.in files in the main R sources, for example: https://svn.r-project.org/R/trunk/tests/ Uwe Ligges > Christophe > > _

Re: [Rd] package.skeleton.S4

2008-04-05 Thread Uwe Ligges
ageMetaNamePattern" introuvable > > I gess it is not a bug, I guess it is because I do not have the methods > V2.7 library > So I'll wait until the 22 april. No need, please download the alpha version and try it out at once! Testers of

Re: [Rd] package.skeleton.S4

2008-04-05 Thread Uwe Ligges
sure I will be able to compile it... It's also not that hard Uwe Ligges > Christophe > > __ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] package.skeleton.S4

2008-04-05 Thread Uwe Ligges
en a documentation file has not been edited so that it contains sensible information. It is alreeady constrructed for you. So just edit it and replace the parts by relevant information that R cannot fill in for you. Please read the manuals and the readme file provided.... > Here is

Re: [Rd] How to create a function calling two functions with unknown number of parameters?

2008-04-05 Thread Uwe Ligges
n(f1, f2, ...) { f1(...) + f2(...) } f1 <- function(a) print(a) f2 <- function(a) print(a) g(f1, f2, 5) [1] 5 [1] 5 [1] 10 > Can anybody help me? Thanks! Well, what you requested already works... If you want to pass different arguments to f1 and f2, you might want to

Re: [Rd] Random seed not reset when starting R (PR#11089)

2008-04-05 Thread Uwe Ligges
ally should be set when R starts, > regardless of whether .Random.seed is set. It is set to some more or less "random" value, as documented. If you want something fixed, why not use set.seed? Uwe Ligges > > This bug has also been reproduced on MacOSX 10.4, R version 2.2.1

Re: [Rd] "\0" gives no warning "unknown escape sequence" (PR#11107)

2008-04-08 Thread Uwe Ligges
[EMAIL PROTECTED] wrote: > Full_Name: Volkmar Klatt > Version: 2.6.2 > OS: linux > Submission from: (NULL) (84.147.0.178) > > > Hello, > > the documentation article > ?Quotes > from package:base could be improved by discussing > the meaning of "\0" escape sequence. > In R (currently used: R-2

[Rd] Notifications for R-2.7.0 beta check results for Windows binary packages

2008-04-12 Thread Uwe Ligges
Dear package maintainers, for your information: Notifications for R-2.7.0 beta check results for Windows binary packages have been sent out to package maintainers if a maintainer's package does not pass the checks for R-2.7.0 beta. Best wishes, Uwe __

Re: [Rd] Some compiling problems

2008-04-29 Thread Uwe Ligges
directory does not have a proper Makefile as before. I do notice they are available from Cross-build or it is possible to build outside R framework via Cygwin. R-2.5.1 is not R-2.7.0, hence re-read the manuals and update your compilers, bitmap requirements etc. Uwe Ligges Many thanks for

Re: [Rd] Error in building ROracle in Windows with R 2.6.2 and Oracle 10g.

2008-05-01 Thread Uwe Ligges
tells about "NAMKE", it seems you are not using the recommended compiler and tool collection as suggested in the manual R Installation and Administration... Uwe Ligges I did not see Rdll.lib anywhere. Do I need to have the src for R as well ? Can anyone provide me a detailed instru

Re: [Rd] Error in building ROracle in Windows with R 2.6.2 and Oracle 10g.

2008-05-01 Thread Uwe Ligges
ason. See the file "README.packages" in .../src/gnuwin32 and its section on using VC++. Best wishes, uwe Ligges Is anyone using

Re: [Rd] bug on compilation (PR#11395)

2008-05-08 Thread Uwe Ligges
d was (after a bunch of other things): configure: error: --with-readline=yes (default) and headers/libs are not available What should I do? Install libreadline headers and libs? Uwe Ligges Hope you can help me. Sincerelly Daniel - Daniel Toffo

Re: [Rd] Version 2.7 for Windows (PR#11399)

2008-05-08 Thread Uwe Ligges
with "--vanilla", for example. I guess you have something in your Startup environemnt that does not work anymore. Uwe Ligges __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel ___

Re: [Rd] Clash between 'Cairo' and 'EBImage' packages on Windows

2008-07-23 Thread Uwe Ligges
Simon Urbanek wrote: On Jul 23, 2008, at 6:21 , Prof Brian Ripley wrote: I updated one of by Windows' boxes to GTK 2.12.9, and replaced the libcairo-2.dll in the Cairo binary distribution by that from GTK 2.12.9. At that point Cairo and EBImage worked together, in either order. I think Uwe

[Rd] win-builder offline on Sept. 13

2008-09-12 Thread Uwe Ligges
Hi, tomorrow, saturday, September 13, our department (and hence win-builder as well as building of any packages for Windows) will be offline. Since the IT room gets new fire protection walls, we will have to move out whole IT equipment for 3 weeks... Uwe Ligges

Re: [Rd] question in value-based color in image()

2008-09-16 Thread Uwe Ligges
= 2), breaks = c(-1, -0.5, 0.8, 1), col = c("blue", "lightblue", "white")) Uwe Ligges TIA, Chris [[alternative HTML version deleted]] __ R-devel@r-project.org mailing list https://stat.et

Re: [Rd] R CMD install runs out of memory

2008-10-03 Thread Uwe Ligges
Duncan Murdoch wrote: On 10/3/2008 10:14 AM, hadley wickham wrote: $ R CMD install ggplot2 ... scale-usage-d1texthtmllatex scale_brewer texthtmllatex example perl(90227) malloc: *** mmap(size=31488) failed (error code=12) *** e

Re: [Rd] Can DESCRIPTION Maintainer: field contain general URL instead of only email address?

2008-10-03 Thread Uwe Ligges
William Dunlap wrote: Our firm would like to route support requests through a website instead of using email. However R will refuse to install a package if DESCRIPTION's Maintainer field does not have a valid email adress or the special value "ORPHANED". (The check is done with tools:::.valid

[Rd] IFCS 2009; deadline: November 3, 2008

2008-10-17 Thread Uwe Ligges
Software' may be of interest to those R useRs and developeRs who are working in the area of clustering, classification, and related data analysis tasks. Submission deadline for abstract is November 3, 2008 More details: http://www.ifcs2009.de/ Best wishes, Uwe L

Re: [Rd] Errors in R CMD check for R 2.8.0

2008-10-26 Thread Uwe Ligges
* checking examples ... ERROR Running examples in 'kzs-Ex.R' failed. See the log file (kzs-Ex.Rout). Uwe Ligges I have no idea how to solve the first problem with references the tcltk package and I do not know why my examples won't run. Any help is appreciated. dxc13 __

Re: [Rd] Errors in R CMD check for R 2.8.0

2008-10-28 Thread Uwe Ligges
the library folder of 2.8.0. Is this troublesome? Yes, it is. You may have overwritten your new tcltk installation by an outdated one. You need to do now: 1. Re-intsall R (in the same folder as before is fine) 2. run update.package(checkBuilt=TRUE) Uwe Ligges Uwe Ligges-3 wrote:

Re: [Rd] parallel build for package? (equivalent of make -j8)

2008-12-01 Thread Uwe Ligges
Peter Dalgaard wrote: Whit Armstrong wrote: I have a package that takes about 20 minutes to compile which tends to prolong the compile/test/compile cycle. Does anyone know how to get R CMD check or R CMD INSTALL to use parallel make? I looked at R CMD INSTALL --help, but I don't see anythi

Re: [Rd] parallel build for package? (equivalent of make -j8)

2008-12-01 Thread Uwe Ligges
Prof Brian Ripley wrote: On Mon, 1 Dec 2008, Uwe Ligges wrote: Peter Dalgaard wrote: Whit Armstrong wrote: I have a package that takes about 20 minutes to compile which tends to prolong the compile/test/compile cycle. Does anyone know how to get R CMD check or R CMD INSTALL to use

Re: [Rd] array indexing

2008-12-05 Thread Uwe Ligges
nted? I'm asking because I want to understand the thinking behind the decision. From my point of view common thinking with matrices and data.frames is that one row corresponds to one observation (that should be extracted). Uwe Ligges rksh

Re: [Rd] R CMD check not running examples under Windows

2008-12-09 Thread Uwe Ligges
My suggestion is to submit the package to the win-builder service and look whether that one checks your example, then you know if it is the package or your setup that causes the problem. Best, Uwe Ligges Andy Bunn wrote: All, I have a fresh build of R 2.8.0 from source on Windows XP

Re: [Rd] R CMD check not running examples under Windows

2008-12-09 Thread Uwe Ligges
No idea, perhaps add some print statements in teh perl code that executes the checks and see why it does not jump in. uwe Andy Bunn wrote: -Original Message- From: Uwe Ligges [mailto:[EMAIL PROTECTED] Sent: Tuesday, December 09, 2008 2:03 AM To: Andy Bunn Cc: r-devel@r

Re: [Rd] vignette compilation times

2009-02-19 Thread Uwe Ligges
Robin Hankin wrote: Dear All I am preparing a number of vignettes that require a very long time to process with Sweave. The longest one takes 10 hours. I love the weaver package! Is a package that includes such a computationally intensive vignette acceptable on CRAN? Are there any guideli

Re: [Rd] Faster Blas Library

2009-02-20 Thread Uwe Ligges
Prof Brian Ripley wrote: I presume this is on Windows (you did not actually say). The section http://cran.r-project.org/bin/windows/contrib/ is managed by Uwe Ligges, and you could send him the Rblas.dll, the sources, a description file and a license (the last being rather important if this

Re: [Rd] Help on Making R Packages

2009-03-01 Thread Uwe Ligges
ith the original pam(), particularly in case you need the cluster package to be loaded. Uwe Ligges But an error happens, function pam not recognize my 2 new arguments. It's like function PAM on R is not linked to my pam code on C++. I really need if someone can help me and tell me what i´

Re: [Rd] bug (PR#13570)

2009-03-05 Thread Uwe Ligges
in the meantime. Moreover it is not the plot stuff that was wrong under R-2.8.1 (release) but the loess computations. Uwe Ligges __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] Package issue

2009-03-05 Thread Uwe Ligges
Terry, 1. R CMD build on your package reports at least two warnings for me. 2. R CMD check gives dozens of warnings even before the test cases where it already stops in gtest.R rather than anaything called gchol2.R. 3. There is no tests/gchol2.R !!! Perhaps you want to clean up some other i

Re: [Rd] bug (PR#13570)

2009-03-05 Thread Uwe Ligges
vival_2.34-1 Hmisc_3.5-2 loaded via a namespace (and not attached): [1] cluster_1.11.12gamlss_1.9-4 grid_2.9.0 lattice_0.17-20 latticeExtra_0.5-4 [6] MASS_7.2-45tools_2.9.0 Uwe Ligges-3 wrote: Berwin A Turlach wrote: G'day Peter, On Thu, 05 Mar 2009

Re: [Rd] Windows builder down

2009-03-09 Thread Uwe Ligges
Gábor Csárdi wrote: Dear Uwe and all, the build service at http://win-builder.r-project.org/ seems to be down. Do you have any information on whether and when it will be functional again? No idea what happened. The Webserver process dies. Should be running again. Thanks for your message!

Re: [Rd] Package issue

2009-03-09 Thread Uwe Ligges
Duncan Murdoch wrote: On 3/9/2009 11:29 AM, Terry Therneau wrote: 2. R CMD check gives dozens of warnings ... Yes, I see a lot of warnings too, but I think that they can and should be ignored. 1. There is a set where the generic function has "..." and my realization of the generic has a

Re: [Rd] r-devel tarball build failure on windows

2009-03-10 Thread Uwe Ligges
-recommended before (i.e. are the packages actually there)? 2. If so, please install the cygwin dlls and try to remove cygwin from your path. The may very well be some version conflicts in I cannot build R / R packages if a full cygwin installation is around. Uwe Ligges --- Making recommended

Re: [Rd] r-devel tarball build failure on windows

2009-03-10 Thread Uwe Ligges
Peter Dalgaard wrote: Uwe Ligges wrote: Hiroyuki Kawakatsu wrote: Hi, On my windows (xp) machine with Rtools29 (excluding cygwin dlls as I have cygwin on my path) -make all recommended- for the latest R-devel tarball (svn revision: 48093) fails when trying to build the recommended packages

Re: [Rd] iconv.dll in Windows

2009-03-12 Thread Uwe Ligges
easier to maintain. The implementation here is 100% compatible: you can drop in libiconv's iconv.dll as a replacement if you need it, from http://www.stats.ox.ac.uk/pub/Rtools/Riconv.dll. To avoid name conflicts with Gtk+, it has been renamed to Riconv.d

Re: [Rd] v2.8.1 crashes on quit(save="yes") or just won't save (PR#13612)

2009-03-20 Thread Uwe Ligges
ing packages from. Please do a clean installation and update all you packages. If you have a separate library than the standard one, please remove all base packages from that library. Uwe Ligges quit(save="no") >> (that latter command worked, 2nd time, no need for Force Quit)

Re: [Rd] Error in FrF2 example on Mac OS

2009-03-24 Thread Uwe Ligges
Ulrike Grömping wrote: Dear all, I just noticed that the 0.9 update for FrF2 did not work out for Mac OS due to an error in an example that ran without error on all other platforms. I do not find any reason for this. In the past, umlauts or tab characters have sometimes been an issue, but I di

Re: [Rd] Size of (objects in) sysdata.rda

2009-03-24 Thread Uwe Ligges
Ulrike Grömping wrote: Dear all, in my package FrF2, I currently face a trade-off of object size and calculation run times. I would like to work with catalogues with some pre-calculated information, and calculate some other information on an as-needed basis. Is there any experience as to wh

Re: [Rd] savePlot export "strange" eps (PR#13620)

2009-03-24 Thread Uwe Ligges
cgeno...@u-paris10.fr wrote: Full_Name: Christophe Genolini Version: 2.8.1 OS: Windows XP Submission from: (NULL) (82.225.59.146) savePlot export "eps" graph that seems to be incorrect. Looks like you saved an EMF rather than an eps file??? Uwe Ligges Trying to incorporate

Re: [Rd] no internal function "int.unzip" in R 2.9 on Windows

2009-03-25 Thread Uwe Ligges
Indeed, there was a change and int.unzip was never documented as part of the API. It was intended to work "Internal"ly. You can use the unzip() function in package utils now, see the NEWS file. Best, Uwe Ligges I am sorry if I miss something obvious, but any suggestions on how I can fix t

Re: [Rd] savePlot export "strange" eps (PR#13620)

2009-03-26 Thread Uwe Ligges
} \end{center} \end{document} and ran LaTeX and dvips. All is fine. So, *please*, specify a reproducible example or we cannot help. I presume you have a LaTeX problem. Anyway, a better way to export your graphs would be to use a proper device directly - independent of what happens here. And als

Re: [Rd] installing RMySQL (PR#13633)

2009-03-31 Thread Uwe Ligges
MySQL header files (i.e. devel files). Uwe Ligges OS: LINUX Submission from: (NULL) (202.141.12.97) I have a linux system of Mandriva-2007 with R version 2.3.0 and MySQL with 5.0.0. I have also got DBI-R database interface version-0.1-11 installed on my Linux system.While installing RMySQL

Re: [Rd] Compiler options for Makefile.win

2009-04-02 Thread Uwe Ligges
I fear the number of R users under Windows that make use of a non-gcc compiler and is reading this list is quite close to 0. Hence you will probably have to find it out yourself. Uwe Ligges cstrato wrote: Dear all, For certain reasons I have to compile the source code of my package on

Re: [Rd] Package (PR#13475)

2009-04-10 Thread Uwe Ligges
s related to normalizePath or related routines in a future update? Well, you need to ask Symantec to fix Norton, hence this is the wrong address. Best wishes, Uwe Ligges S Duncan Murdoch-2 wrote: On 1/27/2009 10:15 AM, partho_bhowm...@ml.com wrote: Full_Name: Partho Bhowmick Version: 2

Re: [Rd] memory.limit(): Typo in Windows NEWS and function returns a "disregarded" error

2009-04-24 Thread Uwe Ligges
Thanks, we know from other messages and this has been files as a bug report minutes ago... Best wishes, Uwe Ligges Pfaff, Bernhard Dr. wrote: Dear list subscriber (R-Core), there is a minor typo in the Windows specific NEWS for R 2.9.0: http://cran.at.r-project.org/bin/windows/base

Re: [Rd] installation of source package with empty man directory fails (PR#13685)

2009-05-02 Thread Uwe Ligges
This is already fixed in R-patched. Please read the FAQs about bugs and try the recent R-patched or R-devel version. Best, Uwe Ligges daniel.sabanesb...@gmx.net wrote: Full_Name: Daniel Sabanes Bove Version: 2.9.0 OS: openSUSE 11.1 (2.6.27.21) Submission from: (NULL) (91.13.255.113

Re: [Rd] Question on help system under windows

2006-02-09 Thread Uwe Ligges
m Microsoft has disabled the feature to display *framed* compiled html located on network drives. According to Microsoft documentation you can re-enable it using the following registry setting - note that this a security issue! [HKEY_LOCAL_MACHINE\SOFTWARE\Microsoft\HTMLHelp\1.x\HHRestrict

Re: [Rd] heatmap.2 in gplots (PR#8587)

2006-02-12 Thread Uwe Ligges
n R, hence please do not post it to R-bugs, R-devel would have been much more appropriate. You will get contact information of the maintainer by typing, e.g.: library(help=gplots) Uwe Ligges > The preliminary documentation for heatmap.2 is inconsistent in at least a > couple &

Re: [Rd] possible bug: NULL equality in lists.

2006-03-07 Thread Uwe Ligges
Charles Dupont wrote: > I was messing around with R and I found an example R behaving oddly: > > a <- alist(NULL, "bob", c(3,6,2,3)) > a > a == 'NULL' > a == "NULL" > a == 'cat' > Always use is.null() to test on NULL, as in

Re: [Rd] possible bug: NULL equality in lists.

2006-03-07 Thread Uwe Ligges
Seth Falcon wrote: > Uwe Ligges <[EMAIL PROTECTED]> writes: > > >>Charles Dupont wrote: >> >> >>>I was messing around with R and I found an example R behaving oddly: >>> >>>a <- alist(NULL, "bob", c(3,6,2,3)) >>>

Re: [Rd] possible bug: NULL equality in lists.

2006-03-07 Thread Uwe Ligges
Seth Falcon wrote: > Uwe Ligges <[EMAIL PROTECTED]> writes: > >>These are all dangerous, hence use the "safe" ways: >> >>sapply(a, is.null) >>sapply(a, identical, "NULL") >>sapply(a, is.na) >>sapply(a, identical, &q

Re: [Rd] possible bug: NULL equality in lists.

2006-03-07 Thread Uwe Ligges
Seth Falcon wrote: > Uwe Ligges <[EMAIL PROTECTED]> writes: > >>>Point taken, but is the behavior of as.character correct? >>>as.character(list(NULL)) >>>as.character(NULL) >> >> >>I thought about it quite a while. I think the current ba

Re: [Rd] Building help pages

2006-03-13 Thread Uwe Ligges
> however have found none. Microsoft's compiled html format can be accessed by, e.g. options(chmhelp=TRUE) ?plot Uwe Ligges > Best regards and thaks for any replies, > Ales Ziberna > > > C:\Ales\Statistika>R CMD INSTALL blockmodeling > > > ---

Re: [Rd] Can example() code stop the example without generating an error?

2006-03-14 Thread Uwe Ligges
code B } But maybe I do not get your point. Uwe Ligges > I know this sounds weird, but I would like some of my Rd examples to > run if and only if another package is available or if a certain large > Affymetrix data file is available. One can put all of the example in > a fu

Re: [Rd] Package dependencies when submitting to CRAN: policies?

2006-03-19 Thread Uwe Ligges
is topic with the CRAN maintainers (hence Kurt Hornik, in particular). I will come back to this in a separate thread off-list. Uwe Ligges > Regards, > > Hadley __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] Creating a package bundle.

2006-03-27 Thread Uwe Ligges
in R so I > would like to keep the current Perhaps you simply want to use install.packages("the_package", dependencies = TRUE) rather than building a package bundle of packages you are not maintaining yourself. Uwe Ligges > versions as part of the bundle rather than allo

Re: [Rd] R 2.3.0: Use of NULL as an environment is deprecated

2006-04-25 Thread Uwe Ligges
recated and gives a warning. > ...] > > I detected the warning message as announced for a couple of contributed > packages, e.g. > > library(ape) > library(car) > library(chron) > library(urca) Not so for me. Are you sure you have reinstalled those packages under R-

Re: [Rd] R 2.3.0: Use of NULL as an environment is deprecated

2006-04-25 Thread Uwe Ligges
gt; rather than NULL. >> >>... >> >>o Use of NULL as an environment is deprecated and gives a warning. >>...] >> >>I detected the warning message as announced for a couple of > > contributed > >>packages, e.g. >> >>librar

Re: [Rd] R 2.3.0: Use of NULL as an environment is deprecated

2006-04-25 Thread Uwe Ligges
t; >>>I detected the warning message as announced for a couple of >> >>contributed >> >> >>>packages, e.g. >>> >>>library(ape) >>>library(car) >>>library(chron) >>>library(urca) >> >> >> >>No

Re: [Rd] R 2.3.0: Use of NULL as an environment is deprecated

2006-04-26 Thread Uwe Ligges
d similar > with other packages. Just out of curiosity, I wonder what has changed in > these packages (i.e. nlme, foreign, cluster and VR got updated) from > downloading the '.exe' or the tarball in the official 2.3.0 release up > to now? For sure you got (or still had in

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