-----Original Message-----
From: Uwe Ligges [mailto:[EMAIL PROTECTED]
Sent: Tuesday, December 09, 2008 2:03 AM
To: Andy Bunn
Cc: r-devel@r-project.org
Subject: Re: [Rd] R CMD check not running examples under Windows
My suggestion is to submit the package to the win-builder service and
look whether that one checks your example, then you know if it is the
package or your setup that causes the problem.
Best,
Uwe Ligges
Andy Bunn wrote:
All,
I have a fresh build of R 2.8.0 from source on Windows XP using the
latest Rtools binary (Rtools29.exe). All appears to be well with the
install and make check-all exits cleanly. However, when running R CMD
check mypkg the program jumps from checking for non-ASCII to checking
the PDF version of the manual:
* checking data for non-ASCII characters ... OK
* checking PDF version of manual ... OK
It skips the making the R-ex subdir and checking the examples. Here
is the complete log:
* using log directory 'C:/Data/research/dplR_dev/dplR.Rcheck'
* using R version 2.8.0 (2008-10-20)
* using session charset: ISO8859-1
* checking for file 'dplR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'dplR' version '1.1.5'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking for .dll and .exe files ... OK
* checking whether package 'dplR' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies
... OK
* checking whether the name space can be loaded with stated
dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking PDF version of manual ... OK
I am running this with no flags yet it seems like I'm outside this
line in the check script:
if($opt_examples && (-d &file_path($library, $pkgname, "R-ex"))) {
Here is the version:
version
_
platform i386-pc-mingw32
arch i386
os mingw32
system i386, mingw32
status
major 2
minor 8.0
year 2008
month 10
day 20
svn rev 46754
language R
version.string R version 2.8.0 (2008-10-20)
And the PATH:
C:\Data\research\dplR_dev>PATH
PATH=c:\Rtools\bin;c:\Rtools\perl\bin;c:\Rtools\MinGW\bin;C:\R\R-
2.8.0\bin\;C:\P
rogram Files\HTML Help Workshop\;C:\Program Files\MiKTeX
2.6\miktex\bin;C:\cygwi
n\bin;C:\FWTools2.2.6\bin;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\Sys
tem32\Wbe
m;C:\WINDOWS\system32\nls;C:\WINDOWS\system32\nls\ENGLISH;C:\Program
Files\Novel
l\ZENworks\;C:\Program
Files\QuickTime\QTSystem;C:\ArcGIS\arcexe9x\bin;C:\Progra
m Files\Common Files\GTK\2.0\bin;C:\Program Files\GPS Pathfinder
Office 3.10;C:\
dpl;C:\Program Files\QuickTime\QTSystem\;C:\Program Files\SSH
Communications Sec
urity\SSH Secure Shell;Z:.;
I expect some cygwin or perl issue but I'm not sure how to proceed in
tracking this down. Cygwin is a fresh install as well. Any suggestions
on what to do next greatly appreciated.
-A
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Andy Bunn
Environmental Sciences, Huxley College
Western Washington University
Bellingham, WA 98225-9181
Skype: andy.bunn
Phone: 360-650-4252
Fax: 360-650-7284
http://myweb.facstaff.wwu.edu/bunna/
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