Re: [Rd] Library lib.loc Option Ignored for Dependencies

2018-07-25 Thread Uwe Ligges
you may want to try some devekopment version of one package agaiunst release versions of the others. This is the purpose of the above: take spam from ~lib and the other from .libPath(). Best, Uwe Ligges Martin > On 07/21/2018 12:34 PM, Martin Maechler wrote: >>>>&

Re: [Rd] Library lib.loc Option Ignored for Dependencies

2018-07-25 Thread Uwe Ligges
equired by ‘statistics’ The latest version of the statistics package is loaded, but the directory of latest packages is ignored by R when it considers the package dependency. See my other mail, I think this is epctected, why don't youi set the .libPaths() correctly? Nor is this self contained a

[Rd] CRAN incoming queue closed from Sep 1 to Sep 9

2018-08-14 Thread Uwe Ligges
Dear developers, the CRAN incoming queue will be closed from Sep 1 to Sep 9. Hence package submissions are only possible before and after that period. Best, Uwe Ligges (for the CRAN team) __ R-devel@r-project.org mailing list https://stat.ethz.ch

[Rd] CRAN incoming queue closed from Dec 21 to Jan 02

2018-12-17 Thread Uwe Ligges
Dear package developers, the CRAN incoming queue will be closed from Dec 21, 2018 to Jan 02, 2019. Hence package submissions are only possible before and after that period. Best, Uwe Ligges (for the CRAN team) __ R-devel@r-project.org mailing list

[Rd] CRAN incoming queue closed from Aug 09 to Aug 18

2019-08-05 Thread Uwe Ligges
Ligges (for the CRAN team) __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] CHM help does not find help docs in package stats

2010-06-18 Thread Uwe Ligges
libraries where you have installed you package and the otehrs, knowing if these are network paths or local storage, ..... Uwe Ligges Thanks + BR, Thorn -Original Message- From: Uwe Ligges [mailto:lig...@statistik.tu-dortmund.de] Sent: samedi 12 juin 2010 18:21 To: Thaler,Thorn,LAUSAN

Re: [Rd] format: different S4 behavior in a package

2010-06-23 Thread Uwe Ligges
There is not a single definition of formatMe() in your message, therefore nothing works for me, not even the very first version... Best, Uwe Ligges On 23.06.2010 09:16, Daniel Murphy wrote: R-Devel-ers: I have an S4 method that simply formats an object: setGeneric("formatMe",

Re: [Rd] Problem with dyn.load() under Windows 64bit at CRAN

2010-06-30 Thread Uwe Ligges
Dominick, your messages are all in my Inbox, I just have not yet found the time to look in more detail. On 30.06.2010 15:44, Dominick Samperi wrote: The package cxxPack builds without problems at CRAN under all OS's except Windows 64bit, and in the case of Windows 64bit there is a problem in

Re: [Rd] Problem with dyn.load() under Windows 64bit at CRAN

2010-07-02 Thread Uwe Ligges
On 02.07.2010 16:10, Dominick Samperi wrote: 2010/6/30 Uwe Ligges On 30.06.2010 15:44, Dominick Samperi wrote: Another odd thing about this is that everything worked under Windows 64bit before the changes were made to serialize the build of packages that depend on each other. That&#

Re: [Rd] CRAN updates?

2010-07-29 Thread Uwe Ligges
On 27.07.2010 22:15, Simon Urbanek wrote: On Jul 27, 2010, at 9:56 AM, Dominick Samperi wrote: It appears that after a package is updated the CRAN binaries for some OS's are built automatically and shortly after the update, while other OS's are not updated for some time (weeks in some cases)

Re: [Rd] R CMD check - "there is no package called"

2010-07-29 Thread Uwe Ligges
On 26.07.2010 02:00, Simon Urbanek wrote: On Jul 24, 2010, at 9:02 AM, John Hendrickx wrote: I'm trying to update my "perturb" package to get rid of some small warning messages. The examples in "perturb" use the "Duncan" dataset from the "car" package and I have "car" installed in R. But whe

Re: [Rd] Telling R CMD check where to find libraries

2010-07-29 Thread Uwe Ligges
in this directory as well, which I do not like either (this directory should contain only stable packages and not packages which are still under construction). So which possibilities do I have? Set the environment variable R_LIBS to point to that library. Uwe Ligges BR Thorn _

Re: [Rd] [R] Problems building own package (Error: "package has been build before R-2.10.0")

2010-08-17 Thread Uwe Ligges
being build before version R-2.10.0 and tells me to rebuild it. So the R that is in your PATH is < 2.10.x Change your PATH and add the R version your are actually working with Uwe Ligges Could this possibly be due to the fact that I have multiple R versions installed (this also inclu

Re: [Rd] [R] Problems building own package (Error: "package has been build before R-2.10.0")

2010-08-17 Thread Uwe Ligges
Then, you have the package installed under another libarry that is first on your search path. Uwe Ligges On 17.08.2010 22:07, Janko Thyson wrote: -Ursprüngliche Nachricht- Von: Uwe Ligges [mailto:lig...@statistik.tu-dortmund.de] Gesendet: Dienstag, 17. August 2010 22:00 An: Janko

[Rd] winbuilder offline / CRAN windows binaries

2010-09-06 Thread Uwe Ligges
Dear all, the winbuilder service as well as the build system for new / updated CRAN windows binaries will be offline for a day or two. I hope to get it online as soon as possible. Best wishes, Uwe Ligges __ R-devel@r-project.org mailing list https

Re: [Rd] winbuilder offline / CRAN windows binaries

2010-09-06 Thread Uwe Ligges
On 06.09.2010 20:04, Uwe Ligges wrote: Dear all, the winbuilder service as well as the build system for new / updated CRAN windows binaries will be offline for a day or two. I hope to get it online as soon as possible. which could be reduced to 30 minutes. :-) Uwe Best wishes, Uwe

Re: [Rd] R forge : svn + ssh without key

2010-09-13 Thread Uwe Ligges
Works for me, I guess you do not have an appropriate ssh connected to your svn client. Perhaps better ask such questions on the R-forge platform? Best, Uwe Ligges On 24.08.2010 15:56, christophe.genolini wrote: Hi the list, I am trying to use R forge. I created an account. I put my project

Re: [Rd] value returned by by()

2010-09-14 Thread Uwe Ligges
It returns a list with athe class attribut set to "by", just use: x <- by(.) unclass(x) Uwe Ligges On 14.09.2010 00:11, Seb wrote: Hi, I noticed that by() returns an object of class 'by', regardless of what its argument 'simplify' is. ?by says that it

Re: [Rd] More strange R CMD build/check errors on Windows

2010-09-14 Thread Uwe Ligges
On 12.09.2010 12:10, Hervé Pagès wrote: Hi Peter, On 09/12/2010 01:51 AM, Peter Dalgaard wrote: On 09/12/2010 08:10 AM, Hervé Pagès wrote: ... AFAICT those problems were never seen before (i.e. with R< 2.12). They show up randomly everyday for a small number of packages (between 10 and 20 o

Re: [Rd] value returned by by()

2010-09-15 Thread Uwe Ligges
On 14.09.2010 20:50, Seb wrote: On Tue, 14 Sep 2010 12:02:04 +0200, Uwe Ligges wrote: It returns a list with athe class attribut set to "by", just use: x<- by(.) unclass(x) Thanks Uwe, however, that still returns an array when using the data.frame method for by(): R>

Re: [Rd] S3 method for package listed in suggest/enhance

2010-09-15 Thread Uwe Ligges
On 01.09.2010 17:38, Hadley Wickham wrote: Hi all, The profr package provides a method for displaying its output with ggplot: ggplot.print. You don't need this ggplot2 to use profr, so ggplot2 is listed under enhances in the DESCRIPTION file. If I have just S3method(ggplot, profr) in my NAME

Re: [Rd] value returned by by()

2010-09-15 Thread Uwe Ligges
On 15.09.2010 15:00, Seb wrote: On Wed, 15 Sep 2010 11:29:23 +0200, peter dalgaard wrote: On Sep 15, 2010, at 10:55 , Uwe Ligges wrote: On 14.09.2010 20:50, Seb wrote: On Tue, 14 Sep 2010 12:02:04 +0200, Uwe Ligges wrote: It returns a list with athe class attribut set to &qu

Re: [Rd] a small suggestion for improving the building of packages

2010-09-15 Thread Uwe Ligges
On 29.08.2010 22:34, Kyle Matoba wrote: All, I just finished the process of build a package for the first time and found it characteristically (for R) very straightforward and well documented. Whenever I deal with open source software I always endeavor to finish the task I have in mind, and u

Re: [Rd] a small suggestion for improving the building of packages

2010-09-16 Thread Uwe Ligges
On 16.09.2010 20:18, Janko Thyson wrote: From: Uwe Ligges Date: Wed, 15 Sep 2010 15:23:01 +0200 On 29.08.2010 22:34, Kyle Matoba wrote: All, I just finished the process of build a package for the first time and found it characteristically (for R) very straightforward and well documented

Re: [Rd] Matrix install fails because of defunct save in require

2010-09-17 Thread Uwe Ligges
On 17.09.2010 16:04, Thomas Petzoldt wrote: Dear R-Devel, I've just tried to compile the fresh R-devel and found that the install of package Matrix failed: - ** help *** installing help indices ** building package indices ... Error in require(Matrix

Re: [Rd] some problems reported in 00check.log

2010-09-17 Thread Uwe Ligges
ject.name.Rd': object.name This means you cited the help page itself? I think you need to tell us the alias(es) you used as well as the purpose of this one. I don't think that I will have use the name of my package. Why is this related? Best wishes, Uwe Ligge

Re: [Rd] Matrix install fails because of defunct save in require

2010-09-17 Thread Uwe Ligges
On 17.09.2010 19:54, Berwin A Turlach wrote: G'day Uwe, On Fri, 17 Sep 2010 19:22:04 +0200 Uwe Ligges wrote: On 17.09.2010 16:04, Thomas Petzoldt wrote: Dear R-Devel, I've just tried to compile the fresh R-devel and found that the install of package Mat

Re: [Rd] some problems reported in 00check.log

2010-09-18 Thread Uwe Ligges
On 17.09.2010 20:15, carol white wrote: Thank you for your reply. --- On Fri, 9/17/10, Uwe Ligges wrote: From: Uwe Ligges Subject: Re: [Rd] some problems reported in 00check.log To: "carol white" Cc: r-devel@r-project.org Date: Friday, September 17, 2010, 10:45 AM regarding

Re: [Rd] some problems reported in 00check.log

2010-09-23 Thread Uwe Ligges
part of a binary package. A user can ask R to generate the manual or parts of it. The manual will so be generated by CRAN, for example. Uwe Ligges thanks, --- On Wed, 9/22/10, Prof Brian Ripley wrote: From: Prof Brian Ripley Subject: Re: [Rd] some problems reported in 00check.log To: "

Re: [Rd] some problems reported in 00check.log

2010-09-23 Thread Uwe Ligges
On 23.09.2010 18:16, carol white wrote: I used the 2.10.0 version My apologies, I actually meant R >= 2.10.0 and hence it is not a surprise. Best, Uwe Ligges --- On Thu, 9/23/10, Uwe Ligges wrote: From: Uwe Ligges Subject: Re: [Rd] some problems reported in 00check.log To: &qu

Re: [Rd] Function works when custom defined but not when part of a package

2010-09-28 Thread Uwe Ligges
I guess you forgot to import the relevant S4 functionality into your namespace. Best, Uwe On 28.09.2010 02:33, Mike Lawrence wrote: Hi folks, I'm not sure if this is a bug or not so I thought I'd check here first. I came across it while working on an update to my package where I try to get

Re: [Rd] bulding a package for Windows (path problem?)

2010-09-30 Thread Uwe Ligges
You need a recent version of the Rtools from Duncan Murdoch's web page. It includes the file.exe required for checking. Uwe Ligges On 30.09.2010 18:38, jgar...@ija.csic.es wrote: Thanks to Duncan Murdoch and Prof. Ripley for the previous answers. I apologize as I was not updated with

Re: [Rd] Rcmd build 32bit-only package on win7 64 bit platform?

2010-10-19 Thread Uwe Ligges
assoc, coxphf, eco, gcmrec, magnets, proj4, ripa, sampfling, survrec, yaml are only available for 32-bit installations. Best, Uwe Ligges Thanks for any advise, Hans-Peter __ R-devel@r-project.org mailing list https://stat.et

Re: [Rd] new.env does not recognize parents from subclassesof "environment"

2010-10-23 Thread Uwe Ligges
Looks like those ETH pages were nnot updated after the R-2.12.0 release (they do not show current R-tached / R-devel), hence CCing Martin Maechler. Best, Uwe Ligges On 22.10.2010 21:54, Vitally S. wrote: John Chambers writes: You need to update your version of R (r-devel or 2.12

Re: [Rd] new.env does not recognize parents from subclassesof "environment"

2010-10-23 Thread Uwe Ligges
On 23.10.2010 17:08, Uwe Ligges wrote: Looks like those ETH pages were nnot updated after the R-2.12.0 release (they do not show current R-tached / R-devel), hence CCing Martin Maechler. ... which I actually do now... Uwe Best, Uwe Ligges On 22.10.2010 21:54, Vitally S. wrote

Re: [Rd] new.env does not recognize parents from subclassesof "environment"

2010-10-23 Thread Uwe Ligges
On 23.10.2010 17:25, Martin Maechler wrote: 2010/10/23 Uwe Ligges: On 23.10.2010 17:08, Uwe Ligges wrote: Looks like those ETH pages were nnot updated after the R-2.12.0 release (they do not show current R-tached / R-devel), hence CCing Martin Maechler. ... which I actually do now

Re: [Rd] inst/ and hidden files/directories, especially inst/.svn/?

2010-11-03 Thread Uwe Ligges
Yes, ".svn" is special cased. Uwe Ligges On 02.11.2010 23:53, Henrik Bengtsson wrote: In Section 'Package subdirectories' of 'Writing R Extensions', it says about the inst/ directory that: "The contents of the inst subdirectory will be copied recurs

Re: [Rd] inst/ and hidden files/directories, especially inst/.svn/?

2010-11-04 Thread Uwe Ligges
On 03.11.2010 19:26, Henrik Bengtsson wrote: On Wed, Nov 3, 2010 at 9:50 AM, Uwe Ligges wrote: Yes, ".svn" is special cased. Good. Note that it does not seem to be the case for the *.zip archive, only for the *.tar.gz archive, as I showed. Henrik, I do not see how it can

Re: [Rd] installing dependencies: binary vs source

2010-11-13 Thread Uwe Ligges
On 12.11.2010 01:40, Hervé Pagès wrote: Hi, Installing from binaries on Windows: > install.packages("multtest") Warning: dependency 'Biobase' is not available trying URL 'http://cran.fhcrc.org/bin/windows/contrib/2.12/multtest_2.6.0.zip' Content type 'application/zip' length 1645590 bytes (1

Re: [Rd] trouble compiling RMySQL (and others) for 64 bit windows.

2010-11-13 Thread Uwe Ligges
I just found this obviously unanswered message: Yes, you need Rtools installed as described in the manual "R Installation and Administration" which explains what to do in more detail. It makes sense to upgrade to R-2.12.0 if you have not already done so. Best, Uwe Ligges On

Re: [Rd] Compiling R 2.12.0 from source: error (temp dir)

2010-11-18 Thread Uwe Ligges
TMPDIR is an wenvironment variable to be set in your OS, for example. Uwe Ligges On 18.11.2010 11:40, Janko Thyson wrote: I've created a /tmp directory so I wouldn't have to change TMPDIR. So far, so good. But now I get the error below. Anything I forgot regarding tcltk? Thx, Ja

Re: [Rd] Error in generating sweave-tex -> pdf file-cont.

2010-12-23 Thread Uwe Ligges
packages, he shouldn't copy the Sweave.sty in all directores containing Rnw file. You can also add the R subdirectory that includes Sweave.sty and freinds to the search path for your TeX distribution. In that case you won't need to pay attention on Sweave.sty upgrades.

Re: [Rd] Bug filed on unzip() function

2010-12-23 Thread Uwe Ligges
This message contains a good question: Is there any reason why the bug reports are no longer mailed to R-devel? I'd appreciate to get a notice what is going on in the bug repository without having to look on those web pages. Best wishes, Uwe On 21.12.2010 18:50, Ken Williams wrote: Hi, A

Re: [Rd] matrix multiplication speed R

2011-01-14 Thread Uwe Ligges
against optimized BLAS versions or how to substitute the BLAS is mentioned in the R INstallation and Administration manual. Best, Uwe Ligges On Fri, Jan 14, 2011 at 9:09 AM, oyvfos wrote: Hi, A quick bench-mark of an R matrix muliplication 500by500 X 500by1, all random variates

Re: [Rd] "Simulate" package namespace at development stage

2011-01-24 Thread Uwe Ligges
just building/installing/testing the package. Uwe Ligges Thanks a lot! Janko __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel __ R-devel@r-project.org mailing list https

Re: [Rd] trojan at current development version?

2011-01-28 Thread Uwe Ligges
On 28.01.2011 13:49, peter dalgaard wrote: On Jan 28, 2011, at 09:47 , Andreas Mayr wrote: Hi, is it possible, that the current development version for Windows ( http://cran.at.r-project.org/bin/windows/base/R-2.13.0dev-win.exe) is infected by a trojan/virus. My antivir-program (www.avira.

Re: [Rd] R limits documented?

2011-02-12 Thread Uwe Ligges
I think it is easiest to point people to the manual "R Internals" for questions on the size of integers, pointers etc. Best, Uwe Ligges On 12.02.2011 03:24, David Winsemius wrote: On Feb 11, 2011, at 8:46 PM, Simon Urbanek wrote: On Feb 11, 2011, at 8:45 PM, Simon Urbanek wr

Re: [Rd] error in: testing if installed package can be loaded

2011-03-28 Thread Uwe Ligges
you testing. Using which command? What's the name of the package? Can we see the package? Do you have recent Rtools installed? [Checking packages works on winbuilder with R-2.13.0 alpha for 64-bit Windows for all CRAN packages without such a message.] Best, Uwe Ligges Is this

Re: [Rd] datalist and data objects in R Package building

2011-03-28 Thread Uwe Ligges
ess the list components afterwards. I think you misunderstood the data concept: You can save objects and load them if the package is installed. That's it. Best, Uwe Ligges 2) I created an image via save.image resulting in foo.rda (containing bar1, bar2, etc). data(foo) now loads bar1 - bar4,

Re: [Rd] datalist and data objects in R Package building

2011-03-28 Thread Uwe Ligges
lazy loading of the data, so you do not need to explicitly load by data are loaded on demand. Best, Uwe Ligges 2011/3/28 Uwe Ligges On 24.03.2011 16:51, andrew stewart wrote: Hello all, I have,say 4 R objects... bar1, bar2, bar3, bar4.. that I'd like to include in an R package &q

Re: [Rd] Suggests and examples

2011-04-03 Thread Uwe Ligges
On 03.04.2011 19:31, Jay Emerson wrote: I apologize in advance for probably missing something obvious, but if someone could point me in the right direction I'd be grateful. This NOTE is not unique to our package (I list a few others, below). Package bcp has several Suggests (strucchange, for

Re: [Rd] R CMD build --resave-data

2011-04-11 Thread Uwe Ligges
On 11.04.2011 02:47, Hervé Pagès wrote: Hi, More about the new --resave-data option As mentioned previously here https://stat.ethz.ch/pipermail/r-devel/2011-April/060511.html 'R CMD build' and 'R CMD INSTALL' handle this new option inconsistently. The former does --resave-data="gzip" by def

Re: [Rd] duplicates() function

2011-04-11 Thread Uwe Ligges
and find that your code and my optimization of it above gives a different undesired answer. Best, Uwe Ligges On 09.04.2011 01:05, B77S wrote: which(duplicated(x)=="TRUE") -- View this message in context: http://r.789695.n4.nabble.com/duplicates-function-tp3436584p3437614.html

Re: [Rd] R CMD build --resave-data

2011-04-13 Thread Uwe Ligges
On 13.04.2011 02:53, Hervé Pagès wrote: Hi Uwe, On 11-04-11 08:13 AM, Uwe Ligges wrote: On 11.04.2011 02:47, Hervé Pagès wrote: Hi, More about the new --resave-data option As mentioned previously here https://stat.ethz.ch/pipermail/r-devel/2011-April/060511.html 'R CMD build&#x

Re: [Rd] DESCRIPTION file and Rd examples

2011-04-15 Thread Uwe Ligges
It would probably be helpful if you could point us to the source version of your package so that we can take a look what happens. Which version of R, and the other required packages are you talking about? Uwe Ligges On 15.04.2011 05:00, Dario Strbenac wrote: I have a confusing error from R

Re: [Rd] useDynLib in older versions e.g. (2.10)

2011-04-21 Thread Uwe Ligges
es were located in a different directory. Hence a) time to upgrade your R version or b) Install the package from sources yourself for the (unstated) version of R on your Windows machine. Uwe Ligges I'm usually under linux and don't know about the gory details of .dll files. NA

Re: [Rd] useDynLib in older versions e.g. (2.10)

2011-04-21 Thread Uwe Ligges
libraries in R-2.12.x changed under Windows. If you need a binary for R-2.8.x, you will have to INSTALL from sources with R-2.8.x, otherwise we cannot guarantee compatibility. Note that R-2.8.1 is unsupported and 5 major releases back! Uwe Ligges _

Re: [Rd] How to create vignette.pdf for R-2.13.0?

2011-04-24 Thread Uwe Ligges
gly, R CMD check still creates the file "xps-manual.pdf". That is the collection of help pages, unrelated to the vignette. Uwe Ligges Here is my sessionInfo: > sessionInfo() R version 2.13.0 (2011-04-13) Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) locale: [1] C attached b

Re: [Rd] Loading a package

2011-04-24 Thread Uwe Ligges
See ?Startup Uwe Ligges On 24.04.2011 16:08, Orin Richards wrote: Hello All, I heard of the First() function in R. but am not sure entirely how it is used. I would like to load an R package at startup, instead of having to manually load each time I run R. How is the first() function used

Re: [Rd] R 2.13.0-beta for Windows, file.copy() throws suspicious errors due to default value of copy.mode

2011-04-24 Thread Uwe Ligges
On 23.04.2011 18:36, Yihui Xie wrote: It seems I can reproduce this error under Windows 7 too; it happens when a file is copied to a directory: dir.create('abc') file.create('testfile') [1] TRUE file.copy('testfile','testfile2') [1] TRUE file.copy('testfile','abc/') You must not use a t

Re: [Rd] How to create vignette.pdf for R-2.13.0?

2011-04-24 Thread Uwe Ligges
not clear to me since "/tmpdt_DataTest3_cel.root/" is definitively NOT a directory. Time to debug what root.scheme is doing with the supplied path. Do you have any ideas? Please note that the vignette "xps.Rnw" did work for the last two years w/o problem. Furthermore

Re: [Rd] How to create vignette.pdf for R-2.13.0?

2011-04-25 Thread Uwe Ligges
On 24.04.2011 23:10, cstrato wrote: Dear Uwe, On 4/24/11 10:37 PM, Uwe Ligges wrote: On 24.04.2011 20:59, cstrato wrote: Dear Uwe, Thank you for your reply. ad 2, Yes, i know that "xps-manual.pdf" is the collection of help pages, I have mentioned it only to show that creating

Re: [Rd] How to create vignette.pdf for R-2.13.0?

2011-04-27 Thread Uwe Ligges
h cases the vignette xps.pdf is created (maybe my Mac did not like to work during eastern holidays). However, one issue remains: "R64 CMD check xps_1.13.1.tar.gz" no longer creates any pdf files for the vignettes. Dioes it give an error or warning? It should check the code. R CMD build creat

Re: [Rd] How to create vignette.pdf for R-2.13.0?

2011-05-03 Thread Uwe Ligges
ated* to vignettes, because they are not built in advance and need to be checked, since they should be produced at user level while vignettes are built at developer level already. Uwe Ligges Best regards Christian _._._._._._._._._._._._._._._._._._ C.h.r.i.s.t.i.a.n S.t.r.a.t.o.w.a V.i.e.n.n.a A.

Re: [Rd] Location of Internal Code

2011-05-03 Thread Uwe Ligges
the names they refer to (also in other files in ./src/main) Uwe Ligges Thanks, Robin __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] How to create vignette.pdf for R-2.13.0?

2011-05-03 Thread Uwe Ligges
finally check your package Running R CMD INSTALL on your source directory may pollute it, hence this is not recommended at all. Best, UWe Best regards Christian On 5/3/11 1:07 PM, Uwe Ligges wrote: On 02.05.2011 21:24, cstrato wrote: Dear Prof. Ripley, Thank you for your confirmation

Re: [Rd] tkrplot not working in R 2.13.0

2011-05-04 Thread Uwe Ligges
k and provide us with what you typed in R and what the actual error message is. Uwe Ligges I traced the problem down to the line in the .First.lib function: .Tcl(paste("load", file, "Rplot")) With file being "C:/Program Files/R/R-2.13.0/library/tkrplot/libs/i386/tkr

[Rd] winbuilder temporary down

2011-05-09 Thread Uwe Ligges
Due to a failure of our air condition, winbuilder is out of service for at least 12 hours until 10:30 am CEST tomorrow morning. Best, Uwe Ligges __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] Log file of building vignette in RCMD check

2011-06-06 Thread Uwe Ligges
ut corresponding PDF: AnnotationFuncsUserguide.Rnw R CMD build should build the vignettes. If it did not succeed, see its output for details. Uwe Ligges As I understand the problem, the vignette is not built. However, I have no problems in doing so manually. How do I fix this problem? I cannot find any l

Re: [Rd] Rtools (Windows XP): what dir is meant by "R source directory"?

2011-06-09 Thread Uwe Ligges
On 09.06.2011 15:07, Janko Thyson wrote: Dear list, thanks for providing such a great thing as the Rtools! Everytime I install it, though, I'm somewhat "puzzled" when it comes to the section "Select R Source Home Directory" (32 bit and 64 builds). Is the folder that I need to specify here a) s

Re: [Rd] CRAN package with dependencies on Bioconductor

2011-06-11 Thread Uwe Ligges
get a bugfix release of a package without the requirement to upgrade R, hence we distribute new or updates packages for the oldrelease version (which is current R-2.12.x). And if BioC has a different policy, that is fine with us. Uwe Ligges On 11.06.2011 10:20, Kornelius Rohmeyer wrote: 201

Re: [Rd] Cross-compiling package

2011-06-12 Thread Uwe Ligges
g was always rather difficult. Why not just you the winbuilder service, if you do not have access to a Windows box: http://win-builder.r-project.org/ It also provides you with check results for the Windows platform. Best, Uwe Ligges Best, Sylvain ___

Re: [Rd] CRAN package with dependencies on Bioconductor

2011-06-15 Thread Uwe Ligges
On 15.06.2011 01:21, Kornelius Rohmeyer wrote: 2011/6/11 Duncan Murdoch: [...] I don't understand. It sounds as though you're saying these two contradictory things: - your package works with any version of graph - CRAN builds a version of graph that is incompatible with your package. N

Re: [Rd] How to see source Rd files from the html help pages for R functions

2011-06-15 Thread Uwe Ligges
learn from some existing html help pages how to put those expressions. Just download the corresponding source package which contains the Rd files. Uwe Ligges Any help will be highly appreciated. Thanks, __ R-devel@r-project.org mailing list https

Re: [Rd] R CMD check on CRAN

2011-06-19 Thread Uwe Ligges
more specific here, I think. Uwe Ligges Thanks Sören __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman

Re: [Rd] R CMD check --force-multiarch does not install all the archs for testing

2011-06-28 Thread Uwe Ligges
On 28.06.2011 01:31, Hervé Pagès wrote: Hi, Why isn't 'R CMD check --force-multiarch' installing the package for all the architectures that are going to be checked? Hervé, no, since it cannot know that that you need --merge-multiarch as an additional install flag for this particular packa

Re: [Rd] R CMD check --configure-args?

2011-06-28 Thread Uwe Ligges
On 28.06.2011 11:35, Roger Bivand wrote: R CMD INSTALL takes a --configure-args argument, but I cannot see how to pass the same values in R CMD check, which returns a: Warning: unknown option ‘--configure-args=... (R 2.13.0). What am I missing? Untested: Can't you pass it via --install-arg

Re: [Rd] R-devel Digest, Vol 100, Issue 28

2011-06-29 Thread Uwe Ligges
On 29.06.2011 13:41, John Maindonald wrote: I get the same style of path as Hadley. This is on Windows 7 Home Premium with SP1. I start R by clicking on the R-2.31.0 icon. I'd assumed that it was a change that came with R-2.13.0! (On 32-bit Windows XP, which I have just checked, I do indeed

Re: [Rd] Compilation error Mac binary

2011-06-29 Thread Uwe Ligges
Looks like a different boost version than the one you require. I'd suggest to talk to the Mac maintainer, Simon Urbanek (CCing). Best, Uwe Ligges On 29.06.2011 17:14, soeren.vo...@uzh.ch wrote: Hello David On 29.06.2011, at 15:56, David Winsemius wrote: On Jun 29, 2011, at 5:

Re: [Rd] R CMD check --force-multiarch does not install all the archs for testing

2011-06-29 Thread Uwe Ligges
On 28.06.2011 23:11, Hervé Pagès wrote: Simon, On 11-06-28 01:44 PM, Simon Urbanek wrote: On Jun 28, 2011, at 3:45 PM, Hervé Pagès wrote: Hi Simon, On 11-06-28 12:19 PM, Simon Urbanek wrote: On Jun 28, 2011, at 3:01 PM, Hervé Pagès wrote: Hi Uwe, On 11-06-28 01:44 AM, Uwe Ligges

Re: [Rd] [linux] connection never times out

2011-07-12 Thread Uwe Ligges
?connections tells us: "Note that this is a timeout for no response, not for the whole operation." And indeed, it will take roughly 20 seconds rather than 60 - at least on the Linux machine I tried it on with R-2.13.1. Best, Uwe Ligges On 12.07.2011 14:24, jeroen00ms wrote: Ac

Re: [Rd] fuzzy c-means algorithm in e1071

2011-07-15 Thread Uwe Ligges
features to the package. Best, Uwe Ligges On 15.07.2011 10:11, Tim Smyth wrote: I was wondering if it was possible to add an extra option to the cmeans function please? In a recent paper by Moore et al.,(2009) they state: "The fuzzy membership function is: 1 - F(Z2), where Z2 is a squared M

Re: [Rd] Confusing inheritance problem

2011-07-16 Thread Uwe Ligges
On 15.07.2011 23:23, Terry Therneau wrote: I have library in development with a function that works when called from the top level, but fails under R CMD check. The paricular line of failure is rsum<- rowSums(kmat>0) where kmat is a dsCMatrix object. I'm currently stumped and loo

Re: [Rd] image adds lines

2011-07-18 Thread Uwe Ligges
Yes, thanks. I think I know where this is coming from and will discuss with Duncan Murdoch who was working on this topic recently. Best, Uwe On 13.07.2011 20:06, Robert J. Hijmans wrote: There seems to be a bug in "image" in R 13.1 (on windows 32& 64 bits) and on R-devel that is not pre

Re: [Rd] requiring NAMESPACE re-installation marked as old.packages?

2011-07-21 Thread Uwe Ligges
Most if not all packages will need a re-installation, not only those you talked about (in particular there is a new snow on CRAN already). Hence I think it is not worth the effort to find out what "old" means. Please note this may change during the development cycle and you may even need one or

Re: [Rd] plot.function documentation/export?

2011-07-25 Thread Uwe Ligges
On 25.07.2011 17:45, Ben Bolker wrote: -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 I recently suggested to someone ( http://stackoverflow.com/questions/6789055/r-inconsistency-why-add-t-sometimes-works-and-sometimes-not-in-the-plot-functi/6789098#6789098 ) that the should use methods("pl

Re: [Rd] CRAN mirror size mushrooming; consider archiving some?

2011-07-26 Thread Uwe Ligges
On 25.07.2011 19:47, Paul Johnson wrote: Hi, everybody I'm setting up a new CRAN mirror and filled up the disk space the server allotted me. I asked for more, then filled that up. Now the system administrators want me to buy an $800 fiber channel card and a storage device. I'm going to do t

Re: [Rd] plot.function documentation/export?

2011-07-26 Thread Uwe Ligges
Now I see the difference: I was using R-devel and that worked as you expected. Best, Uwe Ligges On 25.07.2011 19:01, Ben Bolker wrote: -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 07/25/2011 12:55 PM, Uwe Ligges wrote: On 25.07.2011 17:45, Ben Bolker wrote: I recently suggested

Re: [Rd] X11.options().

2011-08-08 Thread Uwe Ligges
On 08.08.2011 10:20, Martin Maechler wrote: Hi Rolf, please excuse a short "top-reply": As I see you are using an operating system (instead of Win..), can you try in the shell echo 'X11.options()$type' | R --vanilla --slave Martin, given the R on my non-OS had X11.options, I'd ra

Re: [Rd] X11.options().

2011-08-09 Thread Uwe Ligges
Fine for me on a recent Debian with R-2.13.1 patched. I think we will need more details of a really clean install and your version of cairo etc. [I'm on vacations and may be offline until Thursday] Uwe On 09.08.2011 01:10, Rolf Turner wrote: Uh, to get back to the (my) point --- anybody ha

Re: [Rd] gsub("\\", "\\\\", "C:\Program Files\R")

2011-08-12 Thread Uwe Ligges
am getting tired making this manually... yes I know I can use the Search&Replace function from the Editor but I thought R can do everything? I hope someone could help me :( Not really: You need to get it "transformed" before the R parser has its hand on it, therefore the best soluti

Re: [Rd] windows directory structure

2011-08-16 Thread Uwe Ligges
se of R-2.12.0 Which variations are possible for different windows versions ? Currently, the subfolders can be i386 or x64 as you will have seen in the manuals. Best, Uwe Ligges Regards, Uwe __ R-devel@r-project.org mailing list https://stat.et

Re: [Rd] trivial typo in R administration manual

2011-08-16 Thread Uwe Ligges
Thanks, fixed. Uwe On 14.08.2011 08:22, Ben Bolker wrote: the attached should probably read "regarded by some OSes as separate ..." Patch attached from latest SVN. Ben Bolker __ R-devel@r-project.org mailing list https://stat.ethz.ch/mai

Re: [Rd] Graphical option to update.packages in development version (build of the 2011-07-31 r56569) for Windows not working properly

2011-08-20 Thread Uwe Ligges
This one seems to be fixed by Brian Ripley already although I have not found his reponse to your message. Best, Uwe Ligges On 04.08.2011 16:24, Mark Difford wrote: Dear R-core/development-team, The problem noted in the subject-line has been a problem in the last three development versions

Re: [Rd] problems with connections when applied in tryCatch

2011-08-22 Thread Uwe Ligges
el under Windows Server 2008. Can you please file a bug report so it won't be forgotten. Thanks, Uwe Ligges Cheers Joris __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] S3 methods in default namespace

2011-08-27 Thread Uwe Ligges
On 26.08.2011 23:47, Michael Lawrence wrote: Hi guys, Are there any plans for figuring out potential S3 methods and declaring them with S3method() in the automatic default NAMESPACE? There are no safe ways to do that. Uwe Thanks, Michael [[alternative HTML version deleted]] __

Re: [Rd] S3 methods in default namespace

2011-08-28 Thread Uwe Ligges
On 27.08.2011 20:02, Hadley Wickham wrote: Are there any plans for figuring out potential S3 methods and declaring them with S3method() in the automatic default NAMESPACE? There are no safe ways to do that. So doesn't that break packages that use S3 but don't have a NAMESPACE? Maybe, but

Re: [Rd] S3 methods in default namespace

2011-08-29 Thread Uwe Ligges
On 29.08.2011 14:20, Hadley Wickham wrote: So doesn't that break packages that use S3 but don't have a NAMESPACE? Maybe, but since the methods are exported as functions they are also found for method dispatch and imported, if another package imports from the Namspace. The problem I see is wha

Re: [Rd] http://cran.r-project.org/src/base/NEWS.html points to R v2.13.0

2011-08-30 Thread Uwe Ligges
On 29.08.2011 21:22, Henrik Bengtsson wrote: FYI, http://cran.r-project.org/src/base/NEWS.html [May 18, 2011] is for R v2.13.0 whereas http://cran.r-project.org/src/base/NEWS [July 8, 2011] is for R v2.13.1. The former is linked to on a few places on http://cran.r-project.org/. Thnaks, prob

Re: [Rd] sysdata.rda, namespaces and package dependencies

2011-08-30 Thread Uwe Ligges
On 30.08.2011 18:59, Duncan Murdoch wrote: On 30/08/2011 11:27 AM, Hadley Wickham wrote: > Your package is doing something weird, so I think it's you: you are loading > the munsell.map file via "load.r" in the top level of the package. That's > not a standard thing to do, and it's not being ex

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