On 06.06.2011 15:30, Stefan McKinnon Høj-Edwards wrote:
Hello,

I am trying to run "RCMD check" on a package. It performs OK, with the 
exception of a single warning:
* checking package vignettes in 'inst/doc' ... WARNING
Package vignette(s) without corresponding PDF:
    AnnotationFuncsUserguide.Rnw

R CMD build should build the vignettes. If it did not succeed, see its output for details.

Uwe Ligges




As I understand the problem, the vignette is not built. However, I have no 
problems in doing so manually.
How do I fix this problem? I cannot find any logs for building the vignette, 
however the output from building the pdf-file of the manual is found in the 
.Rcheck folder.

On a similar note, as my vignette includes a biblio, I have to run "latex" 
twice to get the citations referenced properly with a number. Is this an issue? How can I 
work around it? (The package is submitted to BioC, so there might be other rules there?)

Thank you in advanced.
Yours sincerely,

Stefan McKinnon Høj-Edwards     Dept. of Genetics and Biotechnology
PhD student                     Faculty of Agricultural Sciences
stefan.hoj-edwa...@agrsci.dk    Aarhus University
Tel.: +45 8999 1291             Blichers Allé 20, Postboks 50
Web: www.iysik.com              DK-8830 Tjele
                                 Tel.: +45 8999 1900
                                 Web: www.agrsci.au.dk

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