[Rd] question in value-based color in image()

Hello, I have a matrix with value varying from -1 to 1. I hope to use scaled color based on its value to produce an image of this matrix. Suppose I hope to label those data in [-1,-0.5] with blue, label those [-0.5,0.8] with light blue (tone is proportional to its value) and label those [0.8,1]

[Rd] configure on solaris 2.9 with non GNU compilers (PR#8300)

Full_Name: Toby Muhlhofer Version: 2.2.0, 2.1.1 OS: Solaris 2.9 Submission from: (NULL) (128.83.62.46) I'm trying to compile R on a Solaris machine. The default C compiler is cc (although gcc is available) and the default Fortran compiler is f95 (although g77 is available). Without defining the

[Rd] precision of do_arith() in arithmetic.c

To the R development team: First of all, thank you so much for maintaining wonderful R software. Perhaps, Dr. Ahn has just reported an error on the wilcox.test() function, and suggesting that an error may arise from abs() and rank(). I just had a quick check that the problem may come from the p

[Rd] box and whisker (PR#13821)

In a Box and Whisker plot, I thought that when there are outliers both abov= e and below the whiskers, then the whiskers should both be the same length = (plus or minus 1.5 times the inter-quartile range). If you look at the plot for SilwoodWeather on p.155 of The R Book you will = see that for No

[Rd] Merge (PR#9699)

Full_Name: Edward McNeil Version: 2.5.0 OS: Windows XP Submission from: (NULL) (203.170.234.5) This is a new bug introduced to R2.5.0. Scenario: If one of the data frames to merge contains two variables that have the same name, then the data in first variable (of the same name) is copied to the

Re: [Rd] Merge (PR#9699)

Yes, it appears to have been resolved in R2.5.0pat, although the counter-example provided *does* fail in R2.5.0. A <- data.frame(x=1:3, y=4:6, y=7:9, check.names=FALSE) B <- data.frame(x=1:3, a=3:1) A x y y 1 1 4 7 2 2 5 8 3 3 6 9 B x a 1 1 3 2 2 2 3 3 1 merge(A, B) x y y.1 a 1 1 4 4 3 2

[Rd] Change in grep functionality causes Rd_db to fail silently (PR#9846)

Full_Name: Mike Pacey Version: 2.5.1 OS: SUSE SE Linux 9.3 Submission from: (NULL) (194.80.32.10) Versions 2.5.0 and 2.5.1 currently fail "make check" on my system due to a silent failure in the call to Rd_db("base"): - > ### Name: Rdutils > ### Title: Rd Utilities > ### Aliases: Rd_db Rd_p

[Rd] subcripts on data frames (PR#9885)

I'm not sure if this is a bug, or if I'm doing something wrong. =20 =46rom the worms dataframe, which is at in a file called worms.txt at =20 http://www.imperial.ac.uk/bio/research/crawley/therbook =20 =20 the idea is to extract a s

[Rd] Problem with configure's detection of glob on 2.6.0 (PR#10468)

Full_Name: Mike Pacey Version: 2.6.0 OS: SuSe Linux 9.3 x86_64 Submission from: (NULL) (194.80.32.10) A "vanilla" version of R configures and compiles without a problem on my system. Switching to using the PGI compiler configures correctly (see the values at the bottom fo thismessage), but compi

[Rd] Adding a survival object to a data frame (PR#10510)

Full_Name: Edward McNeil Version: 2.6.1 OS: Windows Submission from: (NULL) (203.170.234.5) I want to show students how the survival object looks like in R. Reproducible example: library(MASS) data(Aids2) attach(Aids2) status <- status=="D" stime <- death-diag surv <- Surv(stime, status) D <- da

[Rd] bug in r-base (PR#10521)

Full_Name: marco zamboni Version: no R version OS: ubuntu gusty Submission from: (NULL) (87.9.174.188) I have just finish to install gusty ubuntu on my AMD sempron. I would like to: $ sudo apt-get install r-base but ... I seguenti pacchetti hanno dipendenze non soddisfatte: r-base: Dipende:

Re: [Rd] Problem building R with Intel MKL v10 BLAS

Michael Braun MIT.EDU> writes: > > NO > > Hi. I'm not sure if this is an R-help or R-devel problem, so I'm > starting here in the hope that someone can help (and willing to go to > the other list if it's more appropriate). I think I am following all of > the instructions in the various man

Re: [Rd] Problem building R with Intel MKL v10 BLAS

Ei-ji Nakama ki.rim.or.jp> writes: > > Hi. > > 2008/1/25, Michael Braun mit.edu>: > > NO > > > > Hi. I'm not sure if this is an R-help or R-devel problem, so I'm > > starting here in the hope that someone can help (and willing to go to > > the other list if it's more appropriate). I think I

[Rd] code optimization,analysis

build person deserves credit. I'm currently setting up to compare gcc to intel compiler on the R base and rerunning the timing benchmarks. Thanks. M Jacobson http://www.ihaveyoga.com ph. 415.515. ___

[Rd] zero variance in part of a glm (PR#11355)

In this real example (below), all four of the replicates in one treatment combination had zero failures, and this produced a very high standard error in the summary.lm. =20 Just adding one failure to one of the replicates produced a well-behaved standard error. =20 I don't know if this is a bug, bu

[Rd] Using option na.rm=True in function SD does not work for matrix with complete columns of NAs (PR#11364)

Dear R-developers, =20 according to the "what's new"-section in version R 2.7.0, there has been = a change in the working of co[rv] and so also in sd and var. =20 I am afraid, that the use of function sd with option "na.rm=3DT" has not = been changed appropriately. So the following problem exists w

[Rd] using Sweave, how to save a plot in a given size

Hi, I'm trying to realise a repport with R and Latex (TeXnicCenter and Miktex for Windows) using Sweave(). I'd like to insert all the pages from a pdf file. So I use this command : \includepdf[pages=-]{figs/plot-partI} The thing is that those pages are quite small and I'd like them t

[Rd] using Sweave, how to save a plot in a given size

Hi there, I'm trying to realise a repport with R and Latex (TeXnicCenter and Miktex for Windows) using Sweave(). I'd like to save my plots in a given size. How can I do that ? The code is : \SweaveOpts{prefix.string = figs/plot, eps = FALSE, pdf = TRUE} <>= plotFunction() @ \includepdf[pag

[Rd] Memory allocation fails in R 2.2.1 and R 2.3.0 on SGI Irix, while plenty of memory available (PR#8861)

<- seq(1,2^29) This yields an R process, consuming about 8 Gb of RAM: PID PGRP USERNAME PRI SIZE RES STATETIME WCPU% CPU% COMMAND 177484 177484 mirjam20 8225M 8217M sleep1:18 29.3 0.00 R After upgrading from R 2.0.0 to R 2.2.1, we cannot allocate more than abo

[Rd] Sys.setlocale upsets windows graphics device (PR#8887)

Full_Name: Edward McNeil Version: 2.3.0 OS: Widows XP Submission from: (NULL) (203.170.234.5) Type the following: > Sys.setlocale("LC_ALL","C") > hist(1:10) CRASH __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] Sys.setlocale upsets windows graphics device (PR#8887)

Hi, We tried it on 3 separate windows XP computers using version 2.3.0. The original locale is set for Thailand on all 3. So how do we fix it? Is there another patch? And why does the crash not happen with earlier R versions (eg. 2.2.1) on the same computer? --- > Sys.getlocale() [1] "LC_COLLATE

[Rd] Compilation issue (PR#9275)

Hi, I have encountered the same problem as the original poster, Andrew, even when matching C and fortran compiler versions. I have tried both gcc-3.3 with g77 (version 3.4.3) via ./configure CC=gcc-3.3 and gcc 4.0.0 with gfortran (version 4.0.2) via ./configure FC=gfortran but both resul

[Rd] Compilation of R-2.2.0 under SUSE 10

Hi I hope this is the right list for the question. I want to install R from source under SUSE 10. When executing ./Configure, I get the following error message: checking for xmkmf... /usr/X11R6/bin/xmkmf configure: WARNING: I could not determine FPICFLAGS. configure: error: See the file INSTALL

Re: [Rd] Compilation of R-2.2.0 under SUSE 10

Could you give me a hint what I should look for? I am quite new to Linux. Rainer On Friday 14 October 2005 14:19, Peter Dalgaard wrote: > Rainer M Krug <[EMAIL PROTECTED]> writes: > > Hi > > > > I hope this is the right list for the question. > > I want to in

Re: [Rd] Compilation of R-2.2.0 under SUSE 10

tran) and it worked. Thanks a lot for your help Peter Rainer On Friday 14 October 2005 15:30, Peter Dalgaard wrote: > Rainer M Krug <[EMAIL PROTECTED]> writes: > > Could you give me a hint what I should look for? I am quite new to Linux. > > > > Rainer > > As lo

Re: [Rd] Compilation of R-2.2.0 under SUSE 10

ux...). Rainer On Friday 14 October 2005 15:37, Detlef Steuer wrote: > Hi, > > most probably you are missing xorg-devel packages. > But there is another problem: > At least the downloadable version of 10.0 does not contain _any_ fortran > compiler. At least I´m unable to find on

[Rd] Control R from another program (written in Delphi)

Cluster, thits is not an option any more. What is the easiest way of copntrolluing R over the network? I thought about sockets, but I am a little bit stuck. Any tips welcome, Rainer -- NEW TELEPHONE NUMBER Tel:+27 - (0)72 808 2975 (w) Rainer M. Krug, Dipl. Phys. (Germany), MSc

[Rd] Socks under R

t(rnorm(100))", con1) just sending the text in "plot(rnorm(100))" to the socket or is it doing more (R specific protocoll for socks comminication)? Thanks, Rainer -- NEW TELEPHONE NUMBER Tel:+27 - (0)72 808 2975 (w) Rainer M. Krug, Dipl. Phys. (Germany), MSc

Re: [Rd] Socks under R

That's brilliant! Thanks a lot for your help, Rainer Simon Urbanek wrote: > Rainer, > > On Oct 19, 2005, at 3:29 PM, Rainer M. Krug wrote: > >> when I use >> >> con1 <- socketConnection(...) >> >> in R and want to send text from another applic

[Rd] How to uninstall R when installed with "make install"

Hi How can I uninstall R when I installed it with "make install"? Thanks, Rainer -- NEW TELEPHONE NUMBER Tel:+27 - (0)72 808 2975 (w) Rainer M. Krug, Dipl. Phys. (Germany), MSc Conservation Biology (UCT) Department of Conservation Ecology University of Stellenbosch

Re: [Rd] Overlaying lattice plots

Excellent, thanks man! Rich -Original Message- From: ernesto [mailto:[EMAIL PROTECTED] Sent: 20 December 2005 10:32 To: Hillary, Richard M; Iago Mosqueira; Mailing List R; R-devel Subject: Re: Overlaying lattice plots Hillary, Richard M wrote: > Morning chaps, I have a little quest

Re: [Rd] Overlaying lattice plots

To: Hillary, Richard M; Iago Mosqueira; Mailing List R; R-devel Subject: Re: Overlaying lattice plots Hillary, Richard M wrote: > Morning chaps, I have a little question for your capable minds... Say > I have an observed and predicted set of quants (in my case, length > frequencies by

[Rd] inappropriate warning in latticeExtra

The warning message in the last line of this email is incorrect. This is behavior which Duncan Murdoch labeled a bug in https://stat.ethz.ch/pipermail/r-help/2017-December/450494.html This is a fresh install of R-devel (2018-03-21 r74436) R Under development (unstable) (2018-03-21 r74436) -

Re: [Rd] Where does L come from?

most likely L comes from Michel or Obelisk. http://img.izing.ml/MARSHALL.html = why you are making Mars colonization (and space) "just a game" http://img.izing.ml/IT.html = why i could care less. ᐧ On Sun, Aug 26, 2018 at 11:30 PM, William Dunlap via R-devel < r-devel@r-project.org> wrote: > >

Re: [Rd] Runnable R packages

> However, I don't think that it would add much value. >>>> But feel free to correct me if you think that I'm wrong. >>>> >>>> [[alternative HTML version deleted]] >>>> >>>> __ >>>> R-devel@r-project.org mail

Re: [Rd] inappropriate warning in latticeExtra

AM Deepayan Sarkar wrote: > > On Fri, Mar 23, 2018 at 7:58 AM, Richard M. Heiberger wrote: > > The warning message in the last line of this email is incorrect. > > This is behavior which Duncan Murdoch labeled a bug in > >https://stat.ethz.ch/pipermail/r-help/2017-December/

Re: [Rd] inappropriate warning in latticeExtra

Yes. You identified it a while ago and Deepayan wrote that he fixed it on r-forge a year ago. It still isn't on cran. On Fri, Jun 14, 2019 at 16:04 Duncan Murdoch wrote: > On 14/06/2019 9:12 a.m., Richard M. Heiberger wrote: > > This is still not repaired in > > R version

Re: [Rd] inappropriate warning in latticeExtra

day03 svn rev77513 language R version.string R Under development (unstable) (2019-12-03 r77513) nickname Unsuffered Consequences Rich On Sat, Jun 15, 2019 at 3:13 AM Deepayan Sarkar wrote: > > On Fri, Jun 14, 2019 at 6:42 PM Richard M. Heiberger wrote: > &

[Rd] R and Epi Info

Hello, I was wondering who to contact to see about somehow interconnecting or integrating the programs R and Epi Info. I have been involved in the development of Epi Info which is a software program developed by the Centers for Disease Control and Prevention (CDC) in Atlanta (www.cdc.gov/ep

[Rd] visualizing data flow and function calls

ve tried searching for such a beast, but if it exists I cannot seem to come up with the right search terms to find it. Thanks in advance, -Robert Robert M. Flight, Ph.D. University of Louisville Bioinformatics Laboratory University of Louisville Louisville, KY PH 502-852-1809 (HSC) PH 502-852-0467

Re: [Rd] Suggestions for R-devel / R-help digest format

irectly to me in addition to sending to R-help), and then I can view the emails at my leisure. HTH, -Robert Robert M. Flight, Ph.D. University of Louisville Bioinformatics Laboratory University of Louisville Louisville, KY PH 502-852-1809 (HSC) PH 502-852-0467 (Belknap) EM robert.fli...@louisvi

[Rd] Usage of options() for user defined options

Hi I want to use options() to store session wide options - is that a reasonable approach, or should options() be reserved for core options? Thanks Rainer -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre of Excellence for

[Rd] "could not find function" after import

I am trying to build a package (GWASTools, submitted to Bioconductor) that uses the "sandwich" package. I have references to "sandwich" in DESCRIPTION: Imports: methods, DBI, RSQLite, sandwich, survival, DNAcopy and NAMESPACE: import(sandwich) In the code itself is a call to vcovHC: Vhat <- v

Re: [Rd] Finding inter-function dependencies within a package

Jewell > > __ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel > -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre of Excellence for Inv

Re: [Rd] R CMD BATCH vs R CMD batch

configuration information about R | javareconf Update the Java configuration variables | rtags Create Emacs-style tag files from C, R, and Rd files ` Unless I miss something, is this is an inconsistency in R? Rainer > > Dirk -- Rainer M. Krug, PhD (Con

Re: [Rd] R CMD BATCH vs R CMD batch

Deepayan Sarkar writes: > On Thu, Oct 29, 2015 at 2:09 PM, Rainer M Krug wrote: >> Dirk Eddelbuettel writes: >> >>> On 28 October 2015 at 21:39, Marius Hofert wrote: >>> | Out of laziness I just used "R CMD batch" instead of "R CMD BATCH".

Re: [Rd] R CMD BATCH vs R CMD batch

peter dalgaard writes: > On 29 Oct 2015, at 10:44 , Rainer M Krug wrote: > >> Out of interest: What is the magic ~R CMD~ is doing? Is it documented >> anywhere? > > > R is open source (and shell scripts are considered self-documenting by > some) True - sho

Re: [Rd] Warn on partial matches in R CMD check

etimes the warnings come from other packages), but it would be > really convenient to have as a switch. and also possibly to enable this for normal running of code outside of packages. Cheers, Rainer > > Hadley -- Rainer M. Krug email: Rainerkrugsde

[Rd] R patch

Hi, please find attached a tiny patch that improves the reproducibility of R as built in openSUSE There are other sources of non-reproducibility as can be seen in the diffs on http://rb.zq1.de/compare.factory-20170428/R-base-compare.out e.g. there are timestamps in /usr/lib64/R/library/boot/Meta

Re: [Rd] [External] Never exporting .__global__ and .__suppressForeign__?

Ivan, thank you for including me on this thread on R-devel. Please be sure to see the last email in my R-pkg-devel thread on RcmdrPlugin.HH_1.1-48.tar.gz, in which I discuss how I responded to this issue, specifically to my detailed discussion in the RcmdrPlugion.HH/NEWS. Rich > On Mar 6, 20

[Rd] Perplexed with environment

ibrary(logger) | > ls(envir=logger:::.logData, all.names=TRUE) | [1] ".logHeader" ".logHeaderClock" ".logHeaderLevel" ` I assume I am doing something really basic wrong? A copy of the package is available at: https://www.dropbox.com/s/hv6abepccz

Re: [Rd] ASCII art in function documentation - difference html and text output?

hanks, Rainer Rainer M Krug writes: > Sarah Goslee writes: > >> Untested, but did you try wrapping the whole thing in a single code block: > > Nope - also in one line. > > Rainer > >> >> \code{ >> all >> the >> things >> } >> &g

[Rd] ASCII art in function documentation?

+--+' | | '| 1/16 | 1/16 | 1/16 |' | | '+--+--+--+' ` and when no empty lines were included obviously put everything behind each other. My question: Is there a way that I can achieve the ASCII art as shown above? Is there a way of having a \linebreak which do

Re: [Rd] ASCII art in function documentation?

y work for you. > > Sarah > > > On Thu, Sep 5, 2013 at 11:10 AM, Rainer M Krug wrote: >> Sarah Goslee writes: >> >>> Untested, but did you try wrapping the whole thing in a single code block: >> >> Nope - also in one line. >> >> Rainer >> &

Re: [Rd] ASCII art in function documentation?

Sarah Goslee writes: > Untested, but did you try wrapping the whole thing in a single code block: Nope - also in one line. Rainer > > \code{ > all > the > things > } > > Sarah > > On Thu, Sep 5, 2013 at 10:10 AM, Rainer M Krug wrote: >> Hi >>

Re: [Rd] ASCII art in function documentation?

"Brian G. Peterson" writes: > On 09/05/2013 09:10 AM, Rainer M Krug wrote: >> want to include ascii art in a function documentation which should >> look as follow: >> >> , >> | +--+--+--+ >> | | 1/16 | 1/16 | 1/16 | >

[Rd] check warning with .onLoad() and setClass()

contains = "simObj" | ) | } ` The class "simObj" is defined in the package, which is in the depends section in the DESCRIPTION file: , | Package: InDrak | Type: Package | Title: Alien spread management simulation model for the Drakensberg | Version: 0.1-0 | Date: 2013-10-03_

Re: [Rd] check warning with .onLoad() and setClass()

example, see the Rcpp package, which uses this to set up load-time C++ > linkages. > > John Chambers > > On Oct 3, 2013, at 3:22 AM, Rainer M Krug wrote: > >> Hi >> >> I am writing a package in which I define a new class in the .onLoad() >> hook: >

Re: [Rd] check warning with .onLoad() and setClass()

Dirk Eddelbuettel writes: > On 4 October 2013 at 12:59, Rainer M Krug wrote: > | Thanks John > | > | that is likely the solution to my problem, but I don't understand > | how I > | can use it and I can't find the example in the Rcpp package (I did > | grep &g

Re: [Rd] check warning with .onLoad() and setClass()

Dirk Eddelbuettel writes: > On 4 October 2013 at 14:15, Rainer M Krug wrote: > | Hm. loadModule is Rcpp function, but I am only interested in using the > | setClass() function, which has nothing to do with Rcpp. I don't even use > | Rcpp in the package, only in one which is im

[Rd] SOLVED: check warning with .onLoad() and setClass()

h thing as setLoadFunction, as far as the standard code in R. > > While you haven't defined "didn't work", an off-the-top-of-the-head > idea would be something like: > >setLoadActions(function(ns) {setClass(., where = ns)}) > > > On Oct 4, 2013, at 7:0

[Rd] search for variable in package in .GlobalEnv first

d then in SIM:: for the variable TYPE. How can do this? Thanks, Rainer -- Rainer M. Krug email: RMKruggmailcom pgpFvdLZpRyLG.pgp Description: PGP signature __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

[Rd] SOLVED: search for variable in package in .GlobalEnv first

Duncan Murdoch writes: > On 07/10/2013 10:29 AM, Rainer M Krug wrote: >> Hi >> >> First, sorry if I get the terminology wrong, I am still quite new to the >> concept of using environments and workspaces. >> >> Say I have a statement in a package SIM

[Rd] Creating Namespace and locking it during runtime?

ot be in a package, but will be source()ed. Next step: pass variables from org mode / emacs to R and to protect these variables from accidental change / removal. Any suggestions on how to do this? Cheers, Rainer - -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT),

Re: [Rd] Creating Namespace and locking it during runtime?

-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Thanks - looks very promising. Rainer On 01/23/14, 09:23 , Prof Brian Ripley wrote: > See ?lockEnvironment, which ??lock shows as ?bindenv . > > On 22/01/2014 20:52, Rainer M Krug wrote: Hi > > I would like to create a Namespace

Re: [Rd] Question re: NA, NaNs in R

? Similarly for NaN value(s) and R_NaN? >> >> >> >> My guess is that it is possible some functions used internally by R >> >> might encode NaN values differently; ie, setting the lower word to a >> >> value different than 1954 (hence being NaN, but poten

[Rd] [GSoC student proposal] Implementation of Modified Weibull-G Family Distribution in R

udent idea, Thank you. Best Regards, Dr. M Aleem [[alternative HTML version deleted]] __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] [RFC] A case for freezing CRAN

of workload, storage space, ... commands should be incorporated in a package (preferably which becomes part of the core packages) to store snapshots of installed package and R version information as a human readable text file, but which can be parsed by a second command to re-create this setup.

Re: [Rd] [RFC] A case for freezing CRAN

s them in a parsable human readable format so that all packages (with the specified version) required can be installed with one command, and I think the problem would be much closer to be solved. Rainer > > Hadley -- Rainer M. Krug email: Rainerkrugsde PGP: 0x0F52

Re: [Rd] [RFC] A case for freezing CRAN

or a local archiving to make it possible to re-run the simulation with the same tools at a later stage - although guarantees would not be possible. Cheers, Rainer -- Rainer M. Krug email: Rainerkrugsde PGP: 0x0F52F982 __ R-devel@r-project.org mailing

Re: [Rd] [RFC] A case for freezing CRAN

nk about this so it does not matter. > > The development branch of my package is in R-Forge, and only bug fixes > and (hopefully) non-breaking enhancements (isolated so that they do > not influence other functions, safe so that API does not change or > format of the output does not

[Rd] Docker versus Vagrant for reproducability - was: The case for freezing CRAN

run? Please note: I see these questions in the light of this discussion of reproducability and not in regards to deployment of applications what the discussions on the web are. Any comments, thoughts, remarks? Rainer Footnotes: [1] http://docs.docker.io/en/latest/installation/mac/ -- Rainer M

Re: [Rd] [RFC] A case for freezing CRAN

Jari Oksanen writes: > On 21/03/2014, at 10:40 AM, Rainer M Krug wrote: > >> >> >> This is a long and (mainly) interesting discussion, which is fanning out >> in many different directions, and I think many are not that relevant to >> the OP's suggestio

Re: [Rd] Docker versus Vagrant for reproducability - was: The case for freezing CRAN

) ) ) ) ) >> ( ( ( ( (Numerical Ecology of Aquatic Systems >> ) ) ) ) ) Mons University, Belgium >> ( ( ( ( ( >> .. >> >> On 21 Mar 2014, at 10:59, Rainer M Krug wrote: >> >> > Dirk Edd

Re: [Rd] Docker versus Vagrant for reproducability - was: The case for freezing CRAN

vive a disconnect: > http://krlmlr.github.io/integrating-xpra-with-screen/ . > > > -Kirill > Footnotes: [1] https://www.docker.io [2] http://docs.docker.io/en/latest/examples/running_ssh_service/ -- Rainer M. Krug email: Rainerkrugsde PGP: 0x0F52F982 pgpECO52k0Gfp.pgp Description: PGP signature __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] Docker versus Vagrant for reproducability - was: The case for freezing CRAN

Forgot: My Dockerfiloe is on github: https://github.com/rkrug/R-docker Rainer M Krug writes: > Thanks everybody for their input - interesting suggestions and useful > information - thanks. > > But I am still struggling to use this information. What I got so far: > > 1) I h

[Rd] creating namespaces outside packages

s I can do with an environment? Thanks, Rainer Footnotes: [1] http://r.789695.n4.nabble.com/create-namespace-without-creating-a-package-td3485968.html -- Rainer M. Krug email: Rainerkrugsde PGP: 0x0F52F982 pgpSpia44kJmE.pgp Description: PGP signature __

[Rd] SOLVED: creating namespaces outside packages

Duncan Murdoch writes: > On 28/03/2014, 7:01 AM, Rainer M Krug wrote: >> Hi >> >> I would like to use namespaces outside packages, but I could not find >> any references on how to do it (only a thread [1] which says "use a >> package"). Using a package

[Rd] Access variable in attached but removed object

;) tmp$test = 13 rm(tmp) test # > 13 test <- 24 test # > 24 ls(all=TRUE) # > character(0) # # how can I access the variable test in the object org:variables in the # search path? # rm(test) test # > 13 --8<---cut here---end--->8--- Any sug

Re: [Rd] Access variable in attached but removed object

Duncan Murdoch writes: > On 09/05/2014, 6:54 AM, Rainer M Krug wrote: >> >> How can I access an object in an attached but deleted environment, when >> the object also exists in the .GolbalEnv? > > Attaching a variable to the search list generally makes a copy of it,

Re: [Rd] debuggingState() analogous to tracingState() ?

Interesting timing. I could have used this additional control yesterday in class. I am teaching a graduate Statistical Computing class. Last night I went through the symbolic deriviatives (the deriv and D functions) in Section 9.6 of the Blue Book. The D function is recursive. I illustrated it

Re: [Rd] update.packages with ask = FALSE will sometimes ask about updates

he settings asked for, these are, the newest versions are installed - but be warned that there are newer versions from source. Thinking about it now, option 4 with warning should be the way to go. Cheers, Rainer > -- Rainer M. Krug email: Rainerkrugsde PGP: 0x0F52F982 signature.asc Descripti

Re: [Rd] [R] Why does R replace all row values with NAs

On 3/3/15 1:26 PM, Hervé Pagès wrote: On 03/03/2015 02:28 AM, Martin Maechler wrote: Diverted from R-help : as it gets into musing about new R language "primitives" William Dunlap on Fri, 27 Feb 2015 08:04:36 -0800 writes: > You could define functions like > is.true

Re: [Rd] MetaCran website v1.0.0-alpha

> Please tell me what you think. > > Best, > Gabor > > [[alternative HTML version deleted]] > -- Rainer M. Krug email: Rainerkrugsde PGP: 0x0F52F982 signature.asc Description: PGP signature __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] RFC: 'igraph' package update and backward compatibility

__ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel > -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre of Excellence for Invasion Biology Stellenbo

Re: [Rd] RFC: 'igraph' package update and backward compatibility

Sorry - not iplot, but igraph. On Thu, Oct 20, 2011 at 9:21 AM, Rainer M Krug wrote: > > > On Wed, Oct 19, 2011 at 8:05 PM, Gábor Csárdi wrote: > >> Dear R developers, >> >> I am seeking advice on some $subject matter. >> >> My package will have an up

Re: [Rd] [R] any updates w.r.t. lapply, sapply, apply retaining classes

Mike, On time classes specifically, the lubridate package with documentation Garrett Grolemund, Hadley Wickham (2011). Dates and Times Made Easy with lubridate. Journal of Statistical Software, 40(3), 1-25. http://www.jstatsoft.org/v40/i03/. solves many confusion problems. Does it handle the

[Rd] Error in documentation of "merge"

and ‘all.y = L’. The "L" should be a T or a TRUE. Cheers, Rainer -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre of Excellence for Invasion Biology Stellenbosch University South Africa Tel : +33 - (0)9 53 10 2

Re: [Rd] Error in documentation of "merge"

On Fri, Nov 4, 2011 at 1:20 PM, peter dalgaard wrote: > > On Nov 4, 2011, at 13:11 , Rainer M Krug wrote: > > > Hi > > > > there seems to be an error in the documentation of the "merge" function: > > > > Arguments: > > > >x, y: da

Re: [Rd] Case: package removed from CRAN, but not orphaned

t;> * >> Confidentiality Note: The information contained in this ...{{dropped:10}} >> >> __** >> R-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/**list

Re: [Rd] bug in rank(), order(), is.unsorted() on character vector

gt; LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] >> LC_MEASUREMENT=en_CA.UTF-8 LC_IDENTIFICATION=C >> >> attached base packages: [1] stats graphics grDevices utils >> datasets methods base >> >> loaded via a namespace (and not attached): [1] tools_2.14.0 >

[Rd] importing S3 methods with importFrom

In my own package, I want to use the default S3 method of the generic function lrtest() from the lmtest package. Since I need only one function from lmtest, I tried to use importFrom in my NAMESPACE: importFrom(lmtest, lrtest) However, this fails R CMD check in the examples: Error in UseMetho

[Rd] location of check.Renviron on Windows

some other directory? I have this _R_CHECK_FORCE_SUGGESTS_=false (have also tried FALSE) in C:\Users\username\.R I have also tried putting the file in C:\Users\username Using r58183 Thanks, -Robert Robert M. Flight, Ph.D. University of Louisville Bioinformatics Laboratory University of Louis

Re: [Rd] location of check.Renviron on Windows

Thanks Simon, that did the ticket. Will remember that next time. -Robert Robert M. Flight, Ph.D. University of Louisville Bioinformatics Laboratory University of Louisville Louisville, KY PH 502-852-1809 (HSC) PH 502-852-0467 (Belknap) EM robert.fli...@louisville.edu EM rfligh...@gmail.com

Re: [Rd] [R] Version control (git, mercurial) for R packages

ent but thanks to > the hard work of Simon Urbanek, Duncan Murdoch, Brian Ripley and > others, this is a one-install process on all major platforms. True - no problem for developers. Cheers, Rainer > > Hadley > > - -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc

Re: [Rd] [R] Version control (git, mercurial) for R packages

-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 10/02/12 22:05, Davor Cubranic wrote: > On February 10, 2012 09:11:35 AM Rainer M Krug wrote: >> But what I was thinking about (in my other post as well) is to >> include github (or any other git repo provider) into r-forge for &

Re: [Rd] requesting a new SIG mailing list

f I am wrong - I am not an expert in hydrology) is mainly spatial. A fragmentation of the lists would need to duplicate effort by members. Cheers, Rainer > > > Thanks in advance, > > Mauricio Zambrano-Bigiarini > - -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Con

Re: [Rd] merge bug fix in R 2.15.0

I would like to add a vote for keeping blank suffixes in merge(), as I routinely use this functionality. An example use case: # using R 2.14.1 # d1 is some data that I've been working on for a while d1 <- data.frame(a=letters[1:10], b=1:10) # d2 is some new data from a collaborator. I want to

[Rd] add sessionInfo() option to "save"

ions of packages and different versions of R. I know that this is partly the idea behind Sweave (and other report generation measures), and perhaps I am at fault for not keeping better track of these types of things, but this seems like it would be useful to a lot of other people besides just me. Though

[Rd] warning in lattice key function

## this example shows a problem in key. tmp <- data.frame(y=rnorm(10), g=rep(ordered(c("A","B")), 5)) bwplot(y ~ g, data=tmp, key=list( text=list(c("A","B"), col=c("blue","red")), points=list(pch=c(17, 16), col=c("blue","red")), space="top", columns=2, border=TRUE,

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