Re: [Rd] common base functions stripping S3 class

2014-11-18 Thread Duncan Murdoch
On 17/11/2014, 4:23 PM, Murat Tasan wrote: > Yeah, my biggest stumbling-point while starting to write S3 classes > was the some-default-methods-preserve class, and > some-default-methods-don't-preserve class dichotomy. > But I'm not sure it's so "easy" to figure this out without more > documentatio

[Rd] ShortRead::FastqStreamer and parallelization

2014-11-18 Thread Cook, Malcolm
Hi, I understand ShortRead::FastqStreamer will read chunks in parallel depending on the value of ShortRead:::.set_omp_threads I see this discussed here: https://stat.ethz.ch/pipermail/bioc-devel/2013-May/004355.html and nowhere else. It probably should be documented in ShortRead. Possibly th

Re: [Rd] ShortRead::FastqStreamer and parallelization

2014-11-18 Thread Prof Brian Ripley
What does this have to do with this (or any R) list? Bioconductor has its own support arrangements. On 18/11/2014 17:00, Cook, Malcolm wrote: Hi, I understand ShortRead::FastqStreamer will read chunks in parallel depending on the value of ShortRead:::.set_omp_threads I see this discussed her

Re: [Rd] Cursor not behaving properly

2014-11-18 Thread Scott Kostyshak
On Mon, Nov 10, 2014 at 10:52 AM, Kaiyin Zhong (Victor Chung) wrote: > I found a strange bug in R recently (version 3.1.2): > > As you can see from the screenshots attached, when the cursor passes the > right edge of the console, instead of start on a new line, it goes back to > the beginning of t