Re: [Rd] R-uthreads?

2008-04-09 Thread Luke Tierney
On Thu, 3 Apr 2008, Andrew Piskorski wrote: > On Wed, Apr 02, 2008 at 11:58:34AM -0500, Luke Tierney wrote: >> Subject: Re: [Rd] callCC in 2.7.0 > >> Some of us worked on something along these lines a while back in a >> branch called R-uthreads, but the cost of converting to that >> approach and t

[Rd] getNativeSymbolInfo fails with Fortran symbol.

2008-04-09 Thread Setzer . Woodrow
In the following code routine 'initaquaphy' is defined in Fortran, and dynamically loaded into R.: test.f: subroutine initaquaphy(odeparms) external odeparms double precision pars(19) common /myparms/pars call odeparms(19, pars) return end $ R CMD

[Rd] coerce methods and inheritance

2008-04-09 Thread Herve Pages
Hi, It doesn't seem that the dispatching algo is finding my coerce method under some circumstances. Let's say I have 2 classes, A and AA and that AA is just a direct extension of A with no additional slots: setClass("A", representation(ii="integer")) setClass("AA", contains="A") I can defi

[Rd] Windows problem related to using shortPathName for Sweave style file

2008-04-09 Thread Patrick Aboyoun
In the process of updating R to R 2.7 alpha or R 2.7 beta for the BioConductor 2.2 builds on Windows, I have hit a snag because the BioC build system has long path names (e.g. D:\biocbld\bbs-2.2-bioc\R) and these path names are not resolving properly by MiKTeX 2.7 during vignette construction.

Re: [Rd] Windows problem related to using shortPathName for Sweave style file

2008-04-09 Thread Patrick Aboyoun
Something funky happened to my e-mail. I was trying to paste information related to MiKTeX and R into my message and it appears to have corrupted the text somehow. Anyway, the message I was trying to get across is that the tex file contains the path \usepackage{E:/paboyoun/BBS-2~1.2-B/R/share/

[Rd] autocompletion problem

2008-04-09 Thread Herve Pages
Hi, Let's create the xxx object just to avoid confusion even if it's not necessary for reproducing the problem below: xxx <- 8:3 If I start typing this: max(xxx[ and now try to autocomplete with , then I get the following error (and a warning): > max(xxx[Error in grep(sprintf("^%s",

Re: [Rd] coerce methods and inheritance

2008-04-09 Thread John Chambers
Herve Pages wrote: > Hi, > > It doesn't seem that the dispatching algo is finding my coerce method under > some circumstances. > Let's say I have 2 classes, A and AA and that AA is just a direct extension > of A with no additional slots: > >setClass("A", representation(ii="integer")) >setCl

Re: [Rd] autocompletion problem

2008-04-09 Thread Deepayan Sarkar
On 4/9/08, Herve Pages <[EMAIL PROTECTED]> wrote: > Hi, > > Let's create the xxx object just to avoid confusion even if it's not > necessary > for reproducing the problem below: > >xxx <- 8:3 > > If I start typing this: > >max(xxx[ > > and now try to autocomplete with , then I get the

Re: [Rd] autocompletion problem

2008-04-09 Thread Peter Dalgaard
Herve Pages wrote: > Hi, > > Let's create the xxx object just to avoid confusion even if it's not necessary > for reproducing the problem below: > >xxx <- 8:3 > > If I start typing this: > >max(xxx[ > > and now try to autocomplete with , then I get the following error (and a > warning): >

Re: [Rd] Windows problem related to using shortPathName for Sweave style file

2008-04-09 Thread Duncan Murdoch
On 09/04/2008 5:23 PM, Patrick Aboyoun wrote: > Something funky happened to my e-mail. I was trying to paste information > related to MiKTeX and R into my message and it appears to have corrupted > the text somehow. Anyway, the message I was trying to get across is that > the tex file contains t

Re: [Rd] autocompletion problem

2008-04-09 Thread Herve Pages
Hi Deepayan, Deepayan Sarkar wrote: > On 4/9/08, Herve Pages <[EMAIL PROTECTED]> wrote: >> Hi, >> >> Let's create the xxx object just to avoid confusion even if it's not >> necessary >> for reproducing the problem below: >> >>xxx <- 8:3 >> >> If I start typing this: >> >>max(xxx[ >> >>

Re: [Rd] Windows problem related to using shortPathName for Sweave style file

2008-04-09 Thread Patrick Aboyoun
I forgot to mention the BioConductor Windows build machine is running Microsoft Windows Server 2003 R2 Enterprise Edition, SP2 I just checked and this same problem exists if I place R in the standard "C:\Program Files\R" location on this machine. For now the backup plan is to move to using short

Re: [Rd] coerce methods and inheritance

2008-04-09 Thread Herve Pages
Hi John, John Chambers wrote: > Herve Pages wrote: >> Hi, >> >> It doesn't seem that the dispatching algo is finding my coerce method >> under >> some circumstances. >> Let's say I have 2 classes, A and AA and that AA is just a direct >> extension >> of A with no additional slots: >> >>setCl