On 09/04/2008 5:23 PM, Patrick Aboyoun wrote:
> Something funky happened to my e-mail. I was trying to paste information
> related to MiKTeX and R into my message and it appears to have corrupted
> the text somehow. Anyway, the message I was trying to get across is that
> the tex file contains the path
>
> \usepackage{E:/paboyoun/BBS-2~1.2-B/R/share/texmf/Sweave}
>
> and MiKTeX 2.7 doesn't know how to resolve it. (The Bioconductor.tex
> file is (hopefully) attached to this e-mail.)
You should be able to get things to work by explicitly putting
\usepackage{Sweave}
somewhere early in your .Rnw file. You may have trouble with MikTeX
finding Sweave.sty, depending how you invoke it: if invoked from R CMD
it should work, but maybe not from your command line unless you tell it
where to look for include files. How you do that changes all the time;
R tries a couple, which is why R CMD probably works.
Duncan Murdoch
>
>
> === BEGIN OS BLOCK ===
>
> E:\paboyoun>pdflatex --version
> MiKTeX-pdfTeX 2.7.2987 (1.40.7) (MiKTeX 2.7)
> Copyright (C) 1982 D. E. Knuth, (C) 1996-2006 Han The Thanh
> TeX is a trademark of the American Mathematical Society.
>
> E:\paboyoun>pdflatex Bioconductor.tex
> This is pdfTeX, Version 3.141592-1.40.7 (MiKTeX 2.7)
> entering extended mode
> (Bioconductor.tex
> LaTeX2e <2005/12/01>
> Babel <v3.8h> and hyphenation patterns for english, dumylang,
> nohyphenation, ge
> rman, ngerman, french, loaded.
> ("C:\Program Files\MiKTeX 2.7\tex\latex\base\article.cls"
> Document Class: article 2005/09/16 v1.4f Standard LaTeX document class
> ("C:\Program Files\MiKTeX 2.7\tex\latex\base\size12.clo"))
> ("C:\Program Files\MiKTeX 2.7\tex\latex\psnfss\times.sty")
> ("C:\Program Files\MiKTeX 2.7\tex\latex\hyperref\hyperref.sty"
> ("C:\Program Files\MiKTeX 2.7\tex\latex\graphics\keyval.sty")
> ("C:\Program Files\MiKTeX 2.7\tex\latex\oberdiek\hycolor.sty")
> ("C:\Program Files\MiKTeX 2.7\tex\latex\hyperref\pd1enc.def")
> ("C:\Program Files\MiKTeX 2.7\tex\generic\oberdiek\etexcmds.sty"
> ("C:\Program Files\MiKTeX 2.7\tex\generic\oberdiek\infwarerr.sty"))
> ("C:\Program Files\MiKTeX 2.7\tex\latex\00miktex\hyperref.cfg")
> ("C:\Program Files\MiKTeX 2.7\tex\latex\oberdiek\kvoptions.sty")
> Implicit mode ON; LaTeX internals redefined
> ("C:\Program Files\MiKTeX 2.7\tex\latex\ltxmisc\url.sty")
> ("C:\Program Files\MiKTeX 2.7\tex\generic\oberdiek\bitset.sty"
> ("C:\Program Files\MiKTeX 2.7\tex\generic\oberdiek\intcalc.sty")
> ("C:\Program Files\MiKTeX 2.7\tex\generic\oberdiek\bigintcalc.sty"
> ("C:\Program Files\MiKTeX 2.7\tex\generic\oberdiek\pdftexcmds.sty")))
> ("C:\Program Files\MiKTeX 2.7\tex\generic\oberdiek\kvsetkeys.sty")
> ("C:\Program Files\MiKTeX 2.7\tex\generic\oberdiek\atbegshi.sty"
> ("C:\Program Files\MiKTeX 2.7\tex\generic\oberdiek\ifpdf.sty")))
> *hyperref using default driver hpdftex*
> ("C:\Program Files\MiKTeX 2.7\tex\latex\hyperref\hpdftex.def")
> ! Missing \endcsname inserted.
> <to be read again>
> \protect
> l.28 \begin
> {document}
> ?
>
>
> ------------------------------------------------------------------------
>
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