Re: [Rd] Problem installing Biobase on Solaris

2008-09-06 Thread Paulo Nuin
Hi Thanks a lot for your suggestions. I had problems compiling R with gcc on Solaris, that's why I decided to install the pre-compiled version. I am in the process of compiling now using the Sun Studio compiler and it is, so far, working wonderfully. I will continue installing it and if I h

Re: [Rd] Problem installing Biobase on Solaris

2008-09-06 Thread Prof Brian Ripley
Is this a pre-compiled R? If so, please do compile from the sources on your own machine. The compiler output you show is rather unusually complex and quite likely you are picking up some spurious headers or libraries. gcc 3.4.3 is a very old compiler: sunfreeware (which is what you appear to

Re: [Rd] Problem installing Biobase on Solaris

2008-09-05 Thread Paulo Nuin
Hi I forgot to paste the compiler output: gcc -std=gnu99 -I/usr/local/lib/R/include -I/usr/local/include -I/usr/local/ssl/include -I/usr/local/pgsql/include -I/usr/local/include/ncurses -I/usr/local/BerkeleyDB.4.2/include -I/usr/openwin/include -I/usr/local/rrdtool-1.2.19/include-fPIC -

Re: [Rd] Problem installing Biobase on Solaris

2008-09-05 Thread Paulo Nuin
Hi I thought of that. We have gcc 3.4.3 installed /gates/sfw10/builds/sfw10-gate/usr/src/cmd/gcc/gcc-3.4.3/configure --prefix=/usr/sfw --with-as=/usr/sfw/bin/gas --with-gnu-as --with-ld=/usr/ccs/bin/ld --without-gnu-ld --enable-languages=c,c++ --enable-shared How to make sure which compiler

Re: [Rd] Problem installing Biobase on Solaris

2008-09-05 Thread Prof Brian Ripley
What compiler is this? This is a compiler issue, not an R one. My guess is that you are mixing gcc (which has __builtin_isnan) and cc (which does not). On Fri, 5 Sep 2008, Paulo Nuin wrote: Hi everyone This is my first post to the list. I had experience installing and using Bioconductor o