Hi
I thought of that. We have gcc 3.4.3 installed
/gates/sfw10/builds/sfw10-gate/usr/src/cmd/gcc/gcc-3.4.3/configure
--prefix=/usr/sfw --with-as=/usr/sfw/bin/gas --with-gnu-as
--with-ld=/usr/ccs/bin/ld --without-gnu-ld --enable-languages=c,c++
--enable-shared
How to make sure which compiler R is using?
Thanks in advance
Paulo
Prof Brian Ripley wrote:
What compiler is this? This is a compiler issue, not an R one.
My guess is that you are mixing gcc (which has __builtin_isnan) and cc
(which does not).
On Fri, 5 Sep 2008, Paulo Nuin wrote:
Hi everyone
This is my first post to the list. I had experience installing and
using Bioconductor on Linux and Windows systems but I am encountering
problems installing Biobase on Solaris running on Sparc. The package
compilation works fine, with only a warning
warning: implicit declaration of function `__builtin_isnan'
the help files are generated but in the end it fails with an error
also related __builtin_isnan
** building package indices ...
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared library
'/usr/local/lib/R/library/Biobase/libs/Biobase.so':
ld.so.1: R: fatal: relocation error: file
/usr/local/lib/R/library/Biobase/libs/Biobase.so: symbol
__builtin_isnan: referenced symbol not found
Calls: <Anonymous> ... tryCatch -> tryCatchList -> tryCatchOne ->
<Anonymous>
Execution halted
ERROR: installing package indices failed
The machine I am using is a Sun SPARC Victoria Falls SunOS 5.10
Generic_127111-11 sun4v sparc SUNW,T5140
I posted this message to the BioC list and it was suggested that I
tried installing any R package that needed compilation. I installed
the XML package with no problems. Any help is appreciated. Thanks in
advance
Paulo
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