This is how it's documented in ?`[`: "Character vectors will be
matched to the names of the object...")
Steve
On Thursday, January 18th, 2024 at 2:51 PM, Jiří Moravec
wrote:
> Subsetting vector (including lists) returns the same number of elements
> as the subsetting vector, inclu
Henrik,
I was able to reproduce this both with Rscript and interactively using the same
version of R you're using (fresh install) and Windows 10.0.22621.2715. It took
about a dozen tries.
Steve
Original Message
On Jan 6, 2024, 12:38, Henrik Bengtsson wrote:
> ISSU
What about having mFUN be only an
argument of x (NAs and all), with a default of \(x) max(abs(x), na.rm
= TRUE)? It's a minor difference, but it might make the mFUN argument
a bit simpler to use (no need to carry a dummy argument when NAs in x
can be handled directly).
Steve
* Tangent: Does boxp
<- mFUN(x[!ina])
round(x, digits = if(mx > 0) max(min.d, digits - as.numeric(log10(mx)))
else digits)
}
Steve
On Mon, Dec 18, 2023, 05:47 Serguei Sokol via R-devel
wrote:
> Le 18/12/2023 à 11:24, Martin Maechler a écrit :
> >>>>>> Serguei Sokol via R-devel
>
nges to zapsmall() in
the corner case Gregory brought up could affect the way certain
objects are printed, both changing the current behavior and perhaps
requiring changes to some other functions.
Steve
On Sun, 17 Dec 2023 at 12:26, Barry Rowlingson
wrote:
>
> I think what's been missed
00 0 0 0
The same problem can also appear when printing the results of
summary.glm() with show.residuals = TRUE if there's little dispersion
in the residuals.
Steve
On Sat, 16 Dec 2023 at 17:34, Gregory Warnes wrote:
>
> I was quite
dimension c(1, 6, 1), but now both the
first and third dimensions are dropped, resulting in a vector with no
dimensions.
We can use the drop function to explicitly see why b[1, ,] doesn't
result in a matrix.
> drop(matrix(1:6, 6, 1))
[1] 1 2 3 4 5 6
Steve
On Fri, 29 Sept 2023 at 23:28, Jos
replacement(regmatches(x, m))
mapply(gsub, pattern, as.character(res), x, USE.NAMES = FALSE)
}
gsub("^..", toupper, c("abc", "xyz"))
[1] "ABc" "XYz"
But this isn't a simple change to replace() anymore, and I may just be
spending too much time
existing code. It would be
much easier if I can just restrict attention to restoring lost names
for unclassed vectors :)
Any thoughts are much appreciated.
Thanks,
Steve
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s good behaviour or not is a different question, but the
documentation seems clear enough (to me, at least).
Best,
Steve
On Fri, 14 Jan 2022 at 20:40, Ben Bolker wrote:
>
>
>People are often surprised that row-indexing a data frame by [ +
> character does partial matching (and annoy
Thank you for the update. Really helpful!
Between this and the unicode changes, the next version will have a very
positive impact on Windows users.
Best,
Steve
On Mon, Dec 13, 2021 at 1:02 PM Tomas Kalibera
wrote:
> The default was now changed in R-devel to the local application data
> (
t with the other funprog functions, and
would mean that Find() and Position() give the same result when
expected
> equals3 <- function(x) x == 3
> Position("equals3", 1:5)
Error in f(x[[i]]) : could not find function "f"
> Position2("equ
Thanks Ben. I just sent a request for a bugzilla login.
Jeroen chimed in earlier in support.
Cheers,
Steve
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ce who switch to a new
cloud backup.
Microsoft is unlikely to put out new guidance any time soon. And the
current guidance doesn't seem opposed to putting R libraries in either
suggested location. So how about we just pick one (I suggest USER/R
for simplicity) and discuss how to go about makin
tion during install, but that is a separate issue.
I'm more concerned with the default location rather than how to change
it. Users won't know that the current default (User/Documents) is
incompatible with their cloud service until after they've installed R
a
uch as the dictionary definitions in a dictionary
app), and other settings"
I don't think libraries fall into the categories of state or settings.
-Steve Haroz
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ER/Documents/R to USER/R will help avoid
"attrition" of beginners.
-Steve
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y project environment managers
like renv. It should just change the global default for Windows R
users.
Also, I believe that on Mac it is not in Documents, but it's in the
equivalent of %USERPROFILE%/R.
Thanks,
Steve Haroz
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gards,
Steve Bronder
Website: stevebronder.com
Phone: 412-719-1282
Email: sbron...@stevebronder.com
On Thu, Apr 2, 2020 at 12:36 AM Kevin Ushey wrote:
> Hello,
>
> Has a decision been made yet as to whether R 4.0.0 on Windows is going
> to be built using the new gcc8 toolchain (des
nuals/r-release/R-lang.html
>
>
> On Tue, Jan 7, 2020 at 5:17 AM Steve Dutky wrote:
> >
> > I need to write some documentation:
> >
> > I'm looking for a standard, consistent way of referring to the
> components
> > and attributes of R data stru
/ABNF grammar for R.
I've looked at the output of bison -v ./R-3.6.2/src/main/gram.y but it does
not appear helpful.
I appreciate any suggestions for where to look or what to do.
Thanks, Steve
--
Ever tried, Ever failed, No Matter:
Try again, Fail again, Fail Better.
Samuel Beckett *Wo
eated without the parameter names?
For example,
int ilaenv_ (int *, char *, char *, int *, int *, int *, int *,
size_t , size_t );
For bonus points, a tab on continuation lines would be nice.
--
Steve
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> you will get the calling signature that you already have in your C
> sources.
>
> This also has the advantage of being standards compliant, and would be
> probably be the preferred method.
>
With the caveat that one may need to use the VALUE attribute to
account for pass-by-value v
> require making changes to LAPACK itself?)
This is probably the best solution as it should allow portability
to any Fortran processor that supports F2003 or newer standard.
See the gtk-fortran project. It has a python program that was
used to generate the needed ISO C in
hanges the above line to
>
> tmp = strtoul(buf, NULL, 10);
>
> the bands do disappear.
Yes. I just discovered the problem also. I was looking at how my bash script
worked fine and how the example Luke gave had a problem. I was using the
print command to keep things in hex. A corrected copy was uploaded so no one
else runs across this.
Best Regards,
-Steve
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seq.c
needs to be strtoul(buf, NULL, 0); so that it handles Hex, Decimal, or
Octal. With this correction to vseq all is fine. No banding in any generated
image. Corrected program is uploaded.
So, the technique works. When the numbers had a problem, due to a conversion
error, it showed a distinct
der=T)
qplot(X, Y, data=num.csv);
Hope this helps sort this out.
Best Regards,
-Steve
On Thursday, September 20, 2018 5:09:23 PM EDT Steve Grubb wrote:
> On Thursday, September 20, 2018 11:15:04 AM EDT Duncan Murdoch wrote:
> > On 20/09/2018 6:59 AM, Ralf Stubner wrote:
> > > On
the resulting plot that was generated from R's numbers using this technique:
http://people.redhat.com/sgrubb/files/r-random.jpg
And for comparison this was generated by collecting the same number of
samples from the bash shell:
http://people.redhat.com/sgrubb/files/bash-random.jpg
The net result is that it shows some banding in the R generated random
numbers where bash has uniform random numbers with no discernible pattern.
Best Regards,
-Steve
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rk loads but its harder to spot
problems. Glibc is better at spotting memory bugs but not as fast.
-Steve
> Anybody feel like doing some empirics?
>
> Dirk
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So .. indeed, your report will have triggered an improvement in
> the code, which I'm about to commit.
That's what it's all about. :-)
> Thank you very much Steve!
>
> > I run the code through Coverity and have quite a lot of
> > problems to tell you about.
&g
ritten?
Yes, I think I see the issue. vasprintf seems to not be tracked for memory
allocation. So, yes I agree its correct as written. Sorry for the noise.
-Steve
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eople in core so they can
see what the lay of the land looks like. R works amazingly good. So much so I
decided to dig deeper. I'd recommend to the core developers that they ask to
get on Coverity's open source scan list.
https://scan.coverity.com/
It's free to open sour
Hello,
This is a patch to fix what appears to be a simple typo. The warning says
"invalid status assuming 0", but then instead sets runLast to 0.
Signed-of-by: Steve Grubb
Index: src/main/main.c
===
--- src/m
Hello,
The SMBUF_SIZED_STRING allows fscanf to read upto 511 bytes. The buffer
at line 1382 is only 128 bytes. The fscanf format specifier ought to be
resized to prevent a stack overrun.
Signed-of-by: Steve Grubb
Index: saveload.c
Hello,
This patch fixes a memory leak due to ptd going out of scope
before its assigned to dd.
Signed-off-by: Steve Grubb
Index: src/library/grDevices/src/devPicTeX.c
===
--- src/library/grDevices/src/devPicTeX.c (revision
Hello,
There are times when b points to buf which is a stack variable. This
leads to a bad free. The current test actually guarantees the stack
will try to get freed. Simplest to just drop the variable and directly
test if b should get freed.
Signed-off-by: Steve Grubb
Index: src/main
Hello,
There appears to be a break missing in the switch/case for the LISTSXP case.
If this is supposed to fall through, I'd suggest a comment so that others
know its by design.
Signed-off-by: Steve Grubb
Index: src/main/buil
Works for me:
> strptime("17_35_14.01234.mp3","%H_%M_%OS")$sec
[1] 14.01234
> strptime("17_35_14.mp3","%H_%M_%OS")$sec
[1] 14
Just leave off the ".mp3" in your time pattern.
Relevant section from the help ("Details") for strptime:
strptime converts character vectors to class "POSIXlt": its input
See inlin
e
On Tue, Dec 20, 2016 at 12:14 PM, Spencer Graves <
spencer.gra...@prodsyse.com> wrote:
> Hi, Dirk:
>
>
>
> On 12/20/2016 10:56 AM, Dirk Eddelbuettel wrote:
>
>> On 20 December 2016 at 17:40, Martin Maechler wrote:
>> | >>>>> Stev
across learner types we can still hit
the MAX_NUM_DLLS error, meaning we'll have to break them down further (or
maybe we can be clever with gcDLLs()?). I'm CC'ing Lars Kotthoff and Bernd
Bischl to make sure I am representing the issue well.
Regards,
Steve Bronder
Website: stevebr
logize, but if it is possible
to increase MAX_NUM_DLLS it would at least make the testing at mlr much
easier.
I understand you are all very busy and thank you for your time.
Regards,
Steve Bronder
Website: stevebronder.com
Phone: 412-719-1282
Email: sbron...@stevebronder.com
[[alternative
describes the amount of variance with respect
to the number of components the user chooses to show? So if I only choose
one I will explain 100% of the variance? I think showing 'Total Proportion
of Variance' is important if that is the case.
Regards,
Steve Bronder
Website: stevebronde
describes the amount of variance with respect
to the number of components the user chooses to show? So if I only choose
one I will explain 100% of the variance? I think showing 'Total Proportion
of Variance' is important if that is the case.
Regards,
Steve Bronder
Website: stevebronde
es : type 'binary' is not supported on this platform
---
Platform session info below:
sessionInfo()
R version 3.2.3 (2015-12-10)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 14.04.4 LTS
Regards,
Steve Bronder
Website: stevebronder.com
Phone: 412-719-1282
Email: sbr
max
neval
diaga 429033.896 434186.694 512143.6728 503355.5865 572811.11 656035.584
100
diagb216.112251.445536.8531688.3595706.98 2437.921
100
Regards,
Steve Bronder
Website: stevebronder.com
Phone: 412-719-1282
Email: sbron...@stevebronder.com
On Thu, May 7, 2015 at
x <- 1
}
else n <- length(x)
if (!missing(nrow))
n <- nrow
if (missing(ncol))
ncol <- n
}
nc <- 10
set.seed(1)
m <- matrix(sample(letters,nc^2,replace=TRUE), ncol = nc)
runoff <- microbenchmark(
diaga = diag(m),
diagb = diag2(m)
)
Regards,
Steve Br
case someone else tries to institute such a regime but
is getting friction due to that point in particular.
Good stuff, though .. thanks for sharing that!
-steve
--
Steve Lianoglou
Graduate Student: Computational Systems Biology
| Memorial Sloan-Kettering Cancer Center
| Weill Medica
that
these tools (vagrant, chef, puppet) are built to handle such cases.
I'd imagine you'd probably need a location where you can grab the
precise (versioned) packages for the things you are specifying, but
...
-steve
--
Steve Lianoglou
Graduate Student: Computational Systems Biology
Ugh, sorry, I meant to say:
On Thu, Feb 28, 2013 at 8:49 PM, Steve Lianoglou
wrote:
[snip]
> The development version of data.table no longer exports J from, but
> once could still use J inside data.tabe[ ... ] calls.
The development version of data.table no longer exports J, so this
sho
not sure what
version of data.table you can get by installing from R-forge, but you
can either check out from subversion or download the latest source
tar-ball from R-forge and install from source ...
HTH,
-steve
--
Steve Lianoglou
Graduate Student: Computational Systems Biology
| Memorial Sloan-K
.
> (also, who decided to name this thing "spam"? i suppose it seemed
> cute at the time but it is virtually impossible to google for. )
That would be the author of the package.
--
Steve Lianoglou
Graduate Student: Computational Systems Biology
| Memorial Sloan-Kettering Cancer Cent
ue, then yes:
http://cran.cnr.Berkeley.edu/bin/linux/ubuntu/
HTH,
-steve
--
Steve Lianoglou
Graduate Student: Computational Systems Biology
| Memorial Sloan-Kettering Cancer Center
| Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.
l the best,
Steve
-Original Message-
From: Uwe Ligges [mailto:lig...@statistik.tu-dortmund.de]
Sent: Friday, 18 May 2012 5:27 PM
To: stephen.peder...@adelaide.edu.au
Cc: r-devel@r-project.org
Subject: Re: [Rd] Cannot Install Custom Package On Windows7 64-bit
On 18.05.2012 08:55,
t;C:\Rtools\gcc-4.6.3\bin" so
it does seem to be there (if that's what it's trying to look for)
Thanks in advance,
Steve
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Hi,
On Thu, Apr 19, 2012 at 4:33 PM, Ravi Varadhan wrote:
> Thanks, Henrik, for the helpful response. Your package was helpful indeed!
>
> However, I would still like to see this in the base package.
For what it's worth, I think they'd be useful to have there, too
Hi,
I'm not sure I follow ... I think we're in total agreement, but it
sounds like you're suggesting we aren't.
On Sun, Mar 18, 2012 at 4:40 PM, Peter Meilstrup
wrote:
> On Sun, Mar 18, 2012 at 12:48 PM, Steve Lianoglou
> wrote:
[snip]
>> > Right, the user
is "exhibit B"
...
and not (using R-2.15.0 beta) (exhibit B):
Error in merge.data.frame(d1, d2, by = "a", suffixes = c("", ".y")) :
there is already a column named 'b'
I can take a crack at a patch to keep the "rescue user from surprises&qu
Hi,
On Tue, Feb 21, 2012 at 11:54 AM, Martin Morgan wrote:
[snip]
> Hi Steve --
>
> args(new) shows that new has a single named argument Class. R's rules of
> partial matching mean that C matches Class before the unnamed "SVM", as in
>
> f = function(XXX=1,
3 4 5 6 7 8 9 10
Slot "Cost":
[1] 1
Slot "eps":
[1] 0.
===
I was fishing around the R-devel mailing list w/ that error message to
see if anything turned up but I wasn't having any luck so it took a
while to figure out what was going on.
Is this kn
ng to from the developer.r-project.org site as well as from some
blurb in the header of the ML task view.
-steve
On Wed, Jan 4, 2012 at 9:19 AM, Max Kuhn wrote:
> Working on the caret package has exposed me to the wide variety of
> approaches that different authors have taken to creating
hub.com/hadley/devtools/blob/master/R/install.r#L57
-steve
--
Steve Lianoglou
Graduate Student: Computational Systems Biology
| Memorial Sloan-Kettering Cancer Center
| Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.org/~lianos/contact
_
ersion
repo when you are ready to submit to CRAN and take advantage of
r-forge's automated building and submission mojo.
My 2 cents,
-steve
--
Steve Lianoglou
Graduate Student: Computational Systems Biology
| Memorial Sloan-Kettering Cancer Center
| Weill Medi
Hi Simon,
On Fri, Sep 9, 2011 at 5:32 PM, Simon Urbanek
wrote:
>
> On Sep 9, 2011, at 10:30 AM, Steve Lianoglou wrote:
>
>> Hi Simon, Prof. Ripley, and Dirk,
>>
>> First: thanks again for the tips, it's great to have some of the "top
>> bRass&qu
:
>> On Thu, 8 Sep 2011, Steve Lianoglou wrote:
[snip]
About the architecture thing:
>>> Ok, sorry for being imprecise. Let's see if we can figure out what it
>>> is (more precise details are at the bottom of the email). I see x86_64
>>> on every 64bi
Hi Simon,
Thanks for the quick response.
Comments in line:
On Thu, Sep 8, 2011 at 4:11 PM, Simon Urbanek
wrote:
>
> On Sep 8, 2011, at 3:59 PM, Steve Lianoglou wrote:
>
>> Hi,
>>
>> Essentially: subject line says it all.
>>
>> I've created a package
t; via Makevars, or somehow specify the package as 64bit
only to see if the package can go up on CRAN until I can find time to
fix the problem (if/when).
Thanks,
-steve
On Thu, Sep 8, 2011 at 3:59 PM, Steve Lianoglou
wrote:
> Hi,
>
> Essentially: subject line says it all.
>
> I'
y install instructions for people to d/l my source
package externally and use it that way.
Thanks,
-steve
--
Steve Lianoglou
Graduate Student: Computational Systems Biology
| Memorial Sloan-Kettering Cancer Center
| Weill Medical College of Cornell University
C
email boxes don't get flooded. gmail then takes care
of the threading as you'd expect for each mailing list ...
Maybe you'd find that setup helpful.
-steve
--
Steve Lianoglou
Graduate Student: Computational Systems Biology
| Memorial Sloan-Kett
with two sets of code.
And you could also try using Hadley's devtools package:
https://github.com/hadley/devtools/
Last I tried to use it, there was some problems with some S4isms (that
maybe were my fault(?)) so I switched back to sourcing my
development-package-dirs (which is fine until yo
ore or less ordinary LaTeX files that you can embed R code
into. Very handy to know how to use, actually, even outside of the
"Package Authoring" context, so ... perhaps you can consider it as
good exercise if you decide to take it on :-)
But again, you can always go the other rout
case you've never
stumbled on this gem:
google for "recursion" and look for Google's "Did you mean" suggestion ...
--
Steve Lianoglou
Graduate Student: Computational Systems Biology
| Memorial Sloan-Kettering Cancer Center
| Weill Medical College of Cornell University
Con
ctions of *.Rd files are run during R
CMD check ... so, if you're trying to load data from a suggested
package that may not be installed, perhaps you can wrap those code
blocks with \dontrun{}.
For more info: this is covered in the "Writing R Extensions," but is
also describe
In python, one can do this
mydict = dict([(keyfun(x), valfun(x)) for x in mylist])
to create a dictionary with whatever keys and values we want from an
input list of arbitrary size. In R, I want to similarly create a list
with names/values that are generated by some keyfun and valfun
(assuming th
the acf function - as it stands, the
value is shown in a plot but there's no way to actually get the value.
Steve.
signature.asc
Description: OpenPGP digital signature
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ot;1"1212
"2"4523
"3"2556
"4"55288
I have tried rbind,cbind,append, merge no luck so far...
Any help greatly appreciated...
Thanks
Steve
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Ben Bolker schrieb:
Steve Kalke uni-rostock.de> writes:
I would like to know if there is an R-package available for
computing the density, distribution function,
quantiles and random
numbers of the p-generalized normal distribution or
if somebody is already working on it.
Hello,
I would like to know if there is an R-package available for computing the density, distribution function, quantiles and random
numbers of the p-generalized normal distribution or if somebody is already working on it.
Best regards,
Steve Kalke
Hmm, I should have read the .C documentation more carefully still. I can't
use DUP=FALSE when passing character vectors. In that case, since specifying
the style doesn't suppress copying I guess my only option is to use the more
complicated .Call API, which I naturally was hoping to avoid.
Dunca
ich case it would seem to be a good
idea for me to make the signature of my C function declare the non-output
arguments to be const (eg const int* rather than int*).
Thanks for your help.
Duncan Temple Lang wrote:
>
>
>
> Steve Jaffe wrote:
>> In Writing R Extensions it is
In Writing R Extensions it is said that R_CallMethodDef has two optional
fields, 'type' and 'style' (where 'style' is said to distinguish
in/out/inout arguments). But it doesn't give the possible values for
'style'. Looking at the header Rdynload.h (version 2.9.2) it appears that
R_CallMethodDef
According to Writing R Extensions, the R_CallMethodDef struct has two
optional fields for specifying the 'type' and 'style' (where 'style' is said
to distinguish in/out/inout). But it gives no details of the possible values
of 'style'. And looking in the header file Rdynload.h the definition of
R_
. But many of our
Windows users don't know about PATH, so it may
be worth checking in the registry if python.exe isn't
in PATH, rather than requiring the user to do some
manual reconfiguration.
But Vista seems to have changed the registry in
some confusing ways. It may not be worth the
etter than using PATH,
since the standard Python installer doesn't update PATH,
although the ActiveState Python installer does. But both
approaches can fail, depending on the options that were
specified when Python was installed.
Good luck,
- Steve
On Sat, Jun 27, 2009 at 12:01 PM, Gabor
Gr
n find out about how it was called?
You should read chapter 6 of the "R Language Definition" manual, which is
titled "Computing on the language".
--
Steve Weston
REvolution Computing
One Century Tower | 265 Church Street, Suite 1006
New Haven, CT 06510
P: 203-777-7442 x2
en
makeargs="${makeargs} SHLIB_LIBADD='\$(OBJC_LIBS)'"
fi
fi
fi
This logic seems to suggest that if there are fortran95 sources, the LD
command will be SHLIB_FCLD...with no apparent way to override it.
Am I mistaken?
Thanks,
-sg
Duncan Murdoch wrote:
On 0
I'm trying to build a package which has both gfortran and c++ code.
In my installation of R, the R CMD INSTALL process compiles each c++ and
gfortran code with the correct compiler, but performs the link step with
"gfortran" and this creates undefined symbols at load time.
How does one overr
Full_Name: Stephen Weston
Version: 2.7.0
OS: darwin8.10.1
Submission from: (NULL) (75.56.13.246)
If a socketConnection is created in an R session, and you call
closeAllConnections to close it, you get the following error:
> x <- socketConnection("localhost", 80)
> closeAllConnections()
Error in
NESCent Hackathon on Comparative Methods in R
Call for Participation and Input
The R statistical analysis package has emerged as a popular platform
for implementation of powerful comparative phylogenetic methods to
understand the evolution of organismal traits. The
Fortran and C codes already available on CRAN so I am unsure
what is the missing link to make these work?
Can anyone provide an explanation and procedure to over come this
problem?
Thanks.
Steve.
[[alternative HTML version deleted]]
y
package" but where do I go from there seems to be a complete mystery to
me at this stage?
Any pointers would be very welcome indeed.
Steve.
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Dear All,
I was trying to check my package using
R CMD check GLDEX
And I got the following error?
"sh" is not recognised as an internal or external command, operable
program or batch file
Can anyone let me know what might be the cause of this error?
Thanks.
them to get updated so
there will not be compatibility problems?
I am aware there is a writing R extensions guide but it seems to be
geared towards a more advanced user rather than beginner like me?
Thanks in advance.
Steve.
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