Zapping a vector of small numbers to zero would cause problems when
printing the results of summary(). For example, if
zapsmall(c(2.220446e-16, ..., 2.220446e-16)) == c(0, ..., 0) then
print(summary(2.220446e-16), digits = 7) would print
Min. 1st Qu. Median Mean 3rd Qu. Max.
0 0 0 0 0 0
The same problem can also appear when printing the results of
summary.glm() with show.residuals = TRUE if there's little dispersion
in the residuals.
Steve
On Sat, 16 Dec 2023 at 17:34, Gregory Warnes <g...@warnes.net> wrote:
>
> I was quite suprised to discover that applying `zapsmall` to a scalar value
> has no apparent effect. For example:
>
> > y <- 2.220446e-16
> > zapsmall(y,)
> [1] 2.2204e-16
>
> I was expecting zapsmall(x)` to act like
>
> > round(y, digits=getOption('digits'))
> [1] 0
>
> Looking at the current source code, indicates that `zapsmall` is expecting a
> vector:
>
> zapsmall <-
> function (x, digits = getOption("digits"))
> {
> if (length(digits) == 0L)
> stop("invalid 'digits'")
> if (all(ina <- is.na(x)))
> return(x)
> mx <- max(abs(x[!ina]))
> round(x, digits = if (mx > 0) max(0L, digits - as.numeric(log10(mx)))
> else digits)
> }
>
> If `x` is a non-zero scalar, zapsmall will never perform rounding.
>
> The man page simply states:
> zapsmall determines a digits argument dr for calling round(x, digits = dr)
> such that values close to zero (compared with the maximal absolute value) are
> ‘zapped’, i.e., replaced by 0.
>
> and doesn’t provide any details about how ‘close to zero’ is defined.
>
> Perhaps handling the special when `x` is a scalar (or only contains a single
> non-NA value) would make sense:
>
> zapsmall <-
> function (x, digits = getOption("digits"))
> {
> if (length(digits) == 0L)
> stop("invalid 'digits'")
> if (all(ina <- is.na(x)))
> return(x)
> mx <- max(abs(x[!ina]))
> round(x, digits = if (mx > 0 && (length(x)-sum(ina))>1 ) max(0L, digits -
> as.numeric(log10(mx))) else digits)
> }
>
> Yielding:
>
> > y <- 2.220446e-16
> > zapsmall(y)
> [1] 0
>
> Another edge case would be when all of the non-na values are the same:
>
> > y <- 2.220446e-16
> > zapsmall(c(y,y))
> [1] 2.220446e-16 2.220446e-16
>
> Thoughts?
>
>
> Gregory R. Warnes, Ph.D.
> g...@warnes.net
> Eternity is a long time, take a friend!
>
>
>
> [[alternative HTML version deleted]]
>
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