Re: [Rd] read.csv

2024-04-27 Thread Kevin Coombes
I was horrified when I saw John Weinstein's article about Excel turning gene names into dates. Mainly because I had been complaining about that phenomenon for years, and it never remotely occurred to me that you could get a publication out of it. I eventually rectified the situation by publishing

Re: [Rd] An interesting chat with ChatGPT

2023-02-13 Thread Kevin Coombes
Chat bots are like politicians, or talking dogs. The fact that they exist is interesting. But no same person would believe anything they say. On Mon, Feb 13, 2023, 10:58 AM Boris Steipe wrote: > Duncan - > > Indeed, this has now been well documented; I have called these > constructions "Schrödin

Re: [Rd] Not documenting a function and not getting a check error?

2023-01-06 Thread Kevin Coombes
I am fairly certain that the check for documentation is really just a check for the presence of the function name in an "alias" line. My circumstantial evidence, from a package in the early stages of development, came from changing the name of a function. I updated everything else (usage, examples,

Re: [Rd] Milestone: 12,000 packages on CRAN

2017-12-15 Thread Kevin Coombes
Cool. Since I got a package accepted overnight, I'm going to take credit for being #12,000 It does look like the apparent exponential growth in packages may have finally come to an end however, collapsing back to something nearly linear.  Note that under an exponential growth model, CRAN

Re: [Rd] Fwd: Re: RSiteSearch, sos, rdocumentation.org, ...?

2016-09-08 Thread Kevin Coombes
Would it make sense to recreate the "searchable R help pages" by feeding them all into elasticsearch, which will automatically index them and also provides an extensive (HTTP+JSON-based) API to perform complex searches? On 9/8/2016 10:31 AM, Jonathan Baron wrote: On 09/08/16 07:09, John Merri

Re: [Rd] R CMD check for the R code from vignettes

2014-06-02 Thread Kevin Coombes
"Doc, it hurts when I do this." "So, don't do that." If no one in R Core does anything about this issue (in terms of changing Sweave or Stangle), then the solution still remains very simple. Authors of vignettes should avoid using anything in \Sexpr{} that has a side effect. As long as they d

Re: [Rd] R CMD check for the R code from vignettes

2014-05-30 Thread Kevin Coombes
Hi, Unless someone is planning to change Stangle to include inline expressions (which I am *not* advocating), I think that relying on side-effects within an \Sexpr construction is a bad idea. So, my own coding style is to restrict my use of \Sexpr to calls of the form \Sexpr{show.the.value.of

Re: [Rd] The case for freezing CRAN

2014-03-20 Thread Kevin Coombes
On 3/20/2014 9:00 AM, Therneau, Terry M., Ph.D. wrote: On 03/20/2014 07:48 AM, Michael Weylandt wrote: On Mar 20, 2014, at 8:19, "Therneau, Terry M., Ph.D." wrote: There is a central assertion to this argument that I don't follow: At the end of the day most published results obtained wit

Re: [Rd] suggestion for "sets" tools upgrade

2014-02-07 Thread Kevin Coombes
As a mathematician by training (and a former practicing mathematician, both of which qualifications I rarely feel compelled to pull out of the closet), I have to agree with Michael's challenge to the original assertion about the "mathematical concept of sets". Sets are collections of distinct

Re: [Rd] R 3.0, Rtools3.0,l Windows7 64-bit, and permission agony

2013-04-21 Thread Kevin Coombes
Here's the short answer: Whatever you used to do should still work. I started this thread, not knowing that it was going to get sucked into a whirlpool on the fringes of an operating system religious war. My sincerest apologies to everyone who has gotten confused as a consequence. I only ra

Re: [Rd] R 3.0, Rtools3.0,l Windows7 64-bit, and permission agony

2013-04-20 Thread Kevin Coombes
On 4/20/2013 1:21 PM, Duncan Murdoch wrote: On 13-04-20 2:02 PM, Kevin Coombes wrote: On 4/20/2013 12:54 PM, Duncan Murdoch wrote: It's not a change to Rtools, it's a change is to the build system in R: it allows you to rename sort or find in your own copy of Rtools, and R will us

Re: [Rd] R 3.0, Rtools3.0,l Windows7 64-bit, and permission agony

2013-04-20 Thread Kevin Coombes
On 4/20/2013 12:54 PM, Duncan Murdoch wrote: On 13-04-20 12:30 PM, Gabor Grothendieck wrote: On Sat, Apr 20, 2013 at 11:49 AM, Duncan Murdoch wrote: On 13-04-20 11:09 AM, Gabor Grothendieck wrote: On Sat, Apr 20, 2013 at 10:45 AM, Hadley Wickham wrote: Just curious: how often do you use

[Rd] R 3.0, Rtools3.0,l Windows7 64-bit, and permission agony

2013-04-19 Thread Kevin Coombes
Having finally found some free time, I was going to use it to update a bunch of R packages from 2.15 to 3.0. I am running Windows 7, 64-bit professional. This is on a brand-new laptop using vanilla settings when installing the operating system. Problem 1: I installed R3.0 to the default loca

Re: [Rd] Does anyone use Sweave (RweaveLatex) option "expand=FALSE"?

2010-08-19 Thread Kevin Coombes
n it might make my use of ESS easier while simultaneously making it easier for Duncan to figure out how to report the correct line numbers. But I only have an extremely vague idea of how one might start to do that... Kevin Matt Shotwell wrote: On Thu, 2010-08-19 at 17:07 -0400, Kevin Coombes wr

Re: [Rd] Does anyone use Sweave (RweaveLatex) option "expand=FALSE"?

2010-08-19 Thread Kevin Coombes
I can certainly live with the line number matching some other part of the code. Duncan Murdoch wrote: On 19/08/2010 5:07 PM, Kevin Coombes wrote: I use it, frequently. The idea for it goes back to some of Knuth's original literate programming ideas for developing weave and tangle when h

Re: [Rd] Does anyone use Sweave (RweaveLatex) option "expand=FALSE"?

2010-08-19 Thread Kevin Coombes
I use it, frequently. The idea for it goes back to some of Knuth's original literate programming ideas for developing weave and tangle when he was writing TeX (the program). I want to be able to document the pieces of some complex algorithm without having to see all of the gory details. For i

Re: [Rd] [R] library(): load library from a specified location

2010-04-06 Thread Kevin Coombes
If we're counting votes, then I vote "no". And I'd be willing to help stuff the ballot box and even volunteer to count the final tallies in order to make sure that the "no" side wins. I understand the logical argument in favor of "use" or "require" or "borrow". I am not swayed. Backwards co

Re: [Rd] Defining a method in two packages

2010-03-09 Thread Kevin Coombes
Wouldn't it make sense to simply create a "ranef" package whose only role in the universe is to create the generic function that lme4, coxme, and anyone else who needs it could just import, without getting tons of additional and (depending on the application) irrelevant code? Best, Kevin U