Unless you are able to reproduce the problem without dplyr then you should
submit your question to dplyr issues tracker. R-devel is for issues in R,
not in a third party packages.
On Fri, Dec 29, 2023, 15:13 Mateo Obregón wrote:
> Hi all-
>
> Looking through stackoverflow for R string combining
Gorecki
On Sat, Oct 29, 2022 at 6:26 PM Jan Gorecki wrote:
>
> Thank you Gabriel,
>
> Just for future readers. Below is a base R way to address this common
> problem, as instructed by you (+stopifnot to suppress print).
>
> Rscript -e 'stopifnot(file.copy("DESCRIPT
Hi,
I would like to propose for capabilities() function to include information
about strict-barrier (--enable-strict-barrier flag).
I can now do "grep barrier /usr/local/lib/R/etc/Makeconf" but having that
in R, in platform independent way, would be useful.
Best Regards,
J
Oh, thank you. I only grep WRE.
Yes it does work
On Fri, Nov 24, 2023 at 12:20 PM Ivan Krylov wrote:
> В Fri, 24 Nov 2023 12:15:06 +0100
> Jan Gorecki пишет:
>
> > Recently we got _R_CHECK_CRAN_INCOMING_TARBALL_THRESHOLD_ env var to
> > tune "Size of tarball&qu
Hello,
Recently we got _R_CHECK_CRAN_INCOMING_TARBALL_THRESHOLD_ env var to tune
"Size of tarball" note during R package check.
Could we get similar one for tuning "checking installed package size" note?
We can then fit R CMD check more tightly to our package and track
regression in installed si
and, far from ideal, but does work.
Best,
Jan
On Fri, Oct 28, 2022 at 10:42 PM Gabriel Becker wrote:
>
> Hi Jan,
>
>
> On Fri, Oct 28, 2022 at 1:57 PM Jan Gorecki wrote:
>>
>> Gabriel,
>>
>> It is the most basic CI use case. One wants to install only
>
rself, as that is counter to install.packages' core design.
>
> Does that make sense?
>
> Best,
> ~G
>
> On Fri, Oct 28, 2022 at 12:18 PM Jan Gorecki wrote:
>>
>> Gabriel,
>>
>> I am trying to design generic solution that could be applied to
>&g
functionality to be part of base R. Possibly they just don't need it
themselves. Yet isn't this sufficient that hundreds/thousands of
packages does need this functionality?
Best regards,
Jan
On Mon, Oct 17, 2022 at 8:39 AM Jan Gorecki wrote:
>
> Gabriel and Simon
>
> I
es one could move that
> functionality into a separate function - we all do that constantly for the
> sites we manage, so it would be certainly something worthwhile.
>
> Cheers,
> Simon
>
>
> > On Oct 15, 2022, at 7:14 PM, Jan Gorecki wrote:
> >
> > Hi Gabriel,
>
(paste0("file://", tdir))
> > library(tools)
> > package_dependencies("rtables", avl)
> $rtables
> [1] "methods""magrittr" "formatters" "stats" "htmltools"
> [6] "grid"
>
> >
of their own R packages repos and CRAN repo in a
>> smooth way. That could possibly help to offload CRAN from new submissions.
>>
>> gh mirror link for easy preview:
>>
>> https://github.com/wch/r-source/blob/tools4pkgs/src/library/tools/R/packages.R#L41
ally makes it easier for organizations
to glue together usage of their own R packages repos and CRAN repo in a
smooth way. That could possibly help to offload CRAN from new submissions.
gh mirror link for easy preview:
https://github.com/wch/r-source/blob/tools4pkgs/src/library/tools/R/packages
Hi R-devs,
R 4.0.5 gives no warning. Is it expected? Searching the news for "I("
doesn't give any info. Thanks
z = I(getClass("MethodDefinition"))
Warning message:
In `class<-`(x, unique.default(c("AsIs", oldClass(x :
Setting class(x) to multiple strings ("AsIs", "classRepresentation",
...);
Don't know this piece well but I am guessing that you haven't found an
example because the iterator is going up to the length of a vector
anymore but only to the number of batches, which is unlikely to be
more than 2^31.
On Tue, Dec 22, 2020 at 12:30 PM Suharto Anggono Suharto Anggono via
R-devel
having that as a default seems
reasonable.
Proposed change seems to be pretty safe because it is now an error.
Best Regards,
Jan Gorecki
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Luke,
When writing a blog post on that, could you please describe
performance implications that this new feature will carry?
AFAIU, compared to a standard way of using temporary variables, pipes
will allow to not increment REFCNT of objects being piped into.
Therefore peak memory usage could be low
Gb /usr/bin/time bin/Rscript jg.R 1e9 2e0 0 0
>
> (your code in jg.R). I get a quick failure with 11785524maxresident)k
>
> Best,
>
> luke
>
> On Tue, 1 Dec 2020, Jan Gorecki wrote:
>
> > Thank you Luke,
> >
> > I tried your suggestion about R_MAX_VSIZE bu
es: 391149
Involuntary context switches: 646410
File system inputs: 106605648
File system outputs: 120
On Fri, Nov 27, 2020 at 10:18 PM wrote:
>
> On Thu, 26 Nov 2020, Jan Gorecki wrote:
>
> > Thank you Luke for looking into it. Your knowledge of gc is definitel
Thank you Luke for looking into it. Your knowledge of gc is definitely
helpful here. I put comments inline below.
Best,
Jan
On Wed, Nov 25, 2020 at 10:38 PM wrote:
>
> On Tue, 24 Nov 2020, Jan Gorecki wrote:
>
> > As for other calls to system. I avoid calling system. In the past
ocess took, how many objects it has to check on each level.
Best regards,
Jan
On Tue, Nov 24, 2020 at 1:05 PM Tomas Kalibera wrote:
>
> On 11/24/20 11:27 AM, Jan Gorecki wrote:
> > Thanks Bill for checking that.
> > It was my impression that warnings are raised from some in
all=, op=,
> args=0x57813f90, rho=) at main.c:1393
>
> -Bill
>
> On Mon, Nov 23, 2020 at 3:15 AM Tomas Kalibera
> wrote:
>>
>> On 11/21/20 6:51 PM, Jan Gorecki wrote:
>> > Dear R-developers,
>> >
>> > Some of the more fat scripts (50+ GB mem
before it raises this warning?
Best regards,
Jan Gorecki
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It is quite known that R documentation on R C api could be improved...
Still R-package-devel mailing list should be preferred for this kind
of questions.
Not sure if that is the best way, but works.
call_to_sum <- inline::cfunction(
language = "C",
sig = c(x = "SEXP"), body = "
SEXP e = PROTE
:
>
> >>>>> Kurt Hornik
> >>>>> on Tue, 30 Jun 2020 06:20:57 +0200 writes:
>
> >>>>> Jan Gorecki writes:
> >> Thank you both, You are absolutely correct that example
> >> should be minimal, so here it is.
>
> >&g
quot;package:stats"),
as.environment("package:utils"),
as.environment("package:methods")
)
unique(env_list)
Best regards,
Jan
On Mon, Jun 29, 2020 at 5:42 PM Martin Maechler
wrote:
>
> >>>>> Kurt Hornik
> >>>>> on Mon
recki/dockerfiles/-/raw/master/r-devel/Dockerfile
On Sat, Jun 27, 2020 at 12:37 AM Jan Gorecki wrote:
>
> Hi R developers,
>
> On R-devel (2020-06-24 r78746) I am getting those two new exceptions
> during R check. I found a change which eventually may be related
> https://github.
reproduce download current data.table from CRAN (1.12.8) and run R check
Best regards,
Jan Gorecki
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Dear R-developers,
Could we have a fixed url to fetch current R-release windows binaries?
Like we do for R-devel
https://cloud.r-project.org/bin/windows/base/R-devel-win.exe
Something like the following would do
https://cloud.r-project.org/bin/windows/base/R-release-win.exe
Thank you,
Jan
2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
> > > #[43] 17 18 19 20 21 22 23 24 25 26
> > >
> > >
> > > And I agree that order with data.frames should give a warning. The
> > > result is indeed useless:
> > >
> > > data.frame(letters,
,x2))
#[1] 1 4 2 3
Encoding(x2) = "unknown"
base::order(c(x2,x1,x1,x2))
#[1] 2 3 1 4
# R-devel
base::order(c(x2,x1,x1,x2))
#[1] 1 2 3 4
Encoding(x2) = "unknown"
base::order(c(x2,x1,x1,x2))
#[1] 1 4 2 3
Best Regards,
Jan Gorecki
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Best Regards,
Jan Gorecki
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erseded by REFCNT. There might be of course other places that needs
update, but this one is important feature of R 4.0.0.
Thank you,
Jan Gorecki
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uot;'
timed out(?) but still exited with 0 code, timeout 7200s, took
7220.005s, warning '/bin/bash -c "./_launcher/solution.R > log.out 2>
log.err"' timed out after 7200s'
Thank you,
Jan Gorecki
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> PS. Simon, I think your explicit comment on mcparallel() & friends is
very helpful for many people and developers. It clearly tells
developers to never use mclapply() as the only path through their
code. I'm quite sure not everyone has been or is aware of this. Now
it's clear. Thank you.
I secon
have a "hello world
from C" package linked from WRE. All those native routines
registration, the proper way, is not really that obvious. It would be
much easier to learn from a package that doesn't have any other logic.
Best wishes,
Jan Gorecki
On Fri, Apr 17, 2020 at 3:32 PM Zhang, Ji
For the same reason, handling false positive in CRAN checks, there are
other places that could be improved.
Like "size of tarball" NOTE.
If one could control this size with an environment variable. Similarly
to the proposal made by Jim. It would be useful as well.
On Thu, Apr 16, 2020 at 5:06 PM H
er
> the documentation. In this case its class of "AsIs".
>
> Best,
> ~G
>
> On Sun, Mar 29, 2020 at 6:29 AM Jan Gorecki wrote:
>>
>> Dear R-devel,
>>
>> AsIs class seems to be well handled by `typeof` and `mode` function.
>> Those two
there any reason behind this behaviour?
Could we have it supported so AsIs class is ignored when `is.vector`
is doing its job?
Best Regards,
Jan Gorecki
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(1L,2L)))
#v + 1:2
substitute(v+x, list(x=c(0L,2L)))
#v + c(0L, 2L)
Thank you,
Jan Gorecki
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Thank you Lionel for comprehensive explanation. I think that rotating
AST in base R is not a good way to go, it would probably complicate
the code heavily.
Best,
Jan Gorecki
On Tue, Mar 17, 2020 at 4:49 PM Lionel Henry wrote:
>
> Hi Jan,
>
> In the lisp code you provide the operator
..(b), splice=TRUE)
d
#6 - (5 + 4)
There is corresponding LISP code provided
CL-USER>
(setf b `(5 + 4))
(5 + 4)
CL-USER>
(setf c `(6 - ,@b))
(6 - 5 + 4)
CL-USER>
(setf c-non-spliced `(6 - ,b))
(6 - (5 + 4))
CL-USER>
Thanks,
Jan Gorecki
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internally, then maybe better to put that into own internal
function?
Best regards,
Jan Gorecki
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I agree it is not good to have those symbols used in packages, but I
found to use those quite often in my developement workflow, which is
something like:
$ R -q
> cc(F)
where `cc` is my function to rebuild application to recent state. I
use it really often. Having to type FALSE every time
e to add an extra argument (e.g. 'strict') to
> is.na(). FALSE by default, and ignored (with or w/o a warning) when the
> type of 'x' is not "numeric".
>
> H.
>
>
> On 12/31/19 22:16, Jan Gorecki wrote:
> > Hello R-devel,
> >
> >
mitive("is.nana") else .Primitive("is.na")
Then probably a copy of C function `do_isnan` as `do_isnana` with a
minor change from `R_IsNaN` to `R_IsNA`.
Best,
Jan Gorecki
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es and for matrices, which are now
> explicitly array objects with 2 dimensions as well as classed as matrices,
> so its more consistent now, and more reasonable for the object).
>
> Best,
> ~G
>
> On Wed, Dec 18, 2019 at 2:44 AM Jan Gorecki wrote:
>
>> Hi R-deve
] [,2] [,3]
#[3,] 21 24 27
Best,
Jan Gorecki
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Dear R-devel,
It seems that data.frame class could be improved to handle long
vectors better. It fails while using `data.frame(.)` and the same
using, I believe, lower overhead, `as.data.frame(list(.)). Please find
reproducible example below, tested on 2019-12-01 r77492.
id1 = sample.int(3e9, rep
In case if anyone needs daily R-devel there is my build scheduled on GitLab.
As of now based on Ubuntu 16.04, R built using:
--with-recommended-packages --enable-strict-barrier
--disable-long-double
Predefined Makevars for building pkgs using: -g -O2 -Wall -pedantic
-fstack-protector-strong -D_FORT
Thank you all for your valuable comments.
Best,
Jan
On Fri, Nov 1, 2019 at 8:15 PM Tierney, Luke wrote:
>
> On Fri, 1 Nov 2019, Jan Gorecki wrote:
>
> > Thank you Luke.
> > That is why I don't use Rf_inherits but INHERITS which does not
> > allocate, prov
Thank you Luke.
That is why I don't use Rf_inherits but INHERITS which does not
allocate, provided in the email body.
I cannot do similarly for S4 classes, thus asking for some API for that.
On Fri, Nov 1, 2019 at 5:56 PM Tierney, Luke wrote:
>
> On Fri, 1 Nov 2019, Jan Gorecki wrote:
allocation, thread safe). This is unfortunately
not possible for S4 classes. I would kindly request new function in R
C api so it can be achieved for S4 classes with no risk of allocation.
For reference mentioned functions below. Thank you.
Jan Gorecki
// S3 inheritance
bool INHERITS(SEXP x, SEXP char_
Gabriel,
My view is rather radical.
- head/tail should return object having same number of dimensions
- data.frame should be a special case
- matrix should be handled as 2D array
P.S. idea of accepting `n` argument as a vector of corresponding
dimensions is a brilliant one
On Wed, Oct 30, 2019 a
stion from
May 2018 that makes contrib.url more flexible, allowing to handle
issue discussed in this email.
https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17420
Best Regards,
Jan Gorecki
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30, 2019 at 10:31 AM Tomas Kalibera
wrote:
>
> On 9/29/19 1:09 PM, Jan Gorecki wrote:
> > Dear R developers,
> >
> > I spotted that R_isNA and R_IsNaN could be improved when applied on a
> > vector where we could take out small part of their logic, run it once,
>
a.out R_IsNaN 8
./a.out ISNAN 8
Best regards,
Jan Gorecki
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Dear Michael,
I think R-devel mailing list is not a proper place to report issues
with devtools. I would try filling an issue in their github
repository.
If you are able to reproduce this issue using plain R without any
extra packages, then please provide such example here.
Regards,
Jan Gorecki
h I doubt
> it will rise to the top of anyone's priority list.
>
> Best,
>
> luke
>
> On Sun, 15 Sep 2019, Jan Gorecki wrote:
>
> > Thank you Luke for prompt reply.
> > Is it possible then to request a new function to R C API "message"
> >
ey, Luke wrote:
>
> On Sun, 15 Sep 2019, Jan Gorecki wrote:
>
> > Dear R-devel community,
> >
> > There appears to be an inconsistency in R C API about the exceptions
> > that can be raised from C code.
> > Mapping of R C funs to corresponding R functio
can catch it?
So in the example below catch(Cmessage()) would behave consistently to
R's catch(message("a"))?
Regards,
Jan Gorecki
catch = function(expr) {
tryCatch(expr,
message=function(m) cat("caught message\n"),
warning=function(w) cat("caught warning\
gains.
There is nothing wrong in having package "a.pkg" and function "a_pkg()".
Regards,
Jan Gorecki
On Fri, Aug 16, 2019 at 1:20 AM Abby Spurdle wrote:
>
> > While
> > package names are not functions, using dots in package names
> > encourages the use o
Hi Toby,
AFAIK it has not been addressed in R. You can handle the problem on
your package side, see
https://github.com/Rdatatable/data.table/pull/3237
Regards,
Jan
On Thu, May 30, 2019 at 4:46 AM Toby Hocking wrote:
>
> Hi all,
>
> I am having an issue related to installing packages on windows w
issues/2422
You should find that discussion useful.
Best,
Jan Gorecki
On Fri, May 17, 2019 at 8:11 AM Pages, Herve wrote:
>
> On 5/16/19 17:48, Gabriel Becker wrote:
>
> Hi Herve,
>
> Inline.
>
>
>
> On Thu, May 16, 2019 at 4:45 PM Pages, Herve
> mailto:hpa...@f
eployment. For those processes you might find tools4pkgs
branch in base R useful (packages.dcf, mirror.packages functions),
unfortunately not merged:
https://github.com/wch/r-source/compare/tools4pkgs
Jan Gorecki
On Thu, Jan 31, 2019 at 9:08 PM Barry Rowlingson
wrote:
>
> On Thu, Jan 31, 2019 at 3
t commutative:
>>
>> > NA + NaN
>> [1] NA
>> > NaN + NA
>> [1] NaN
>>
>>
>>
>> On Mon, Jul 2, 2018 at 5:32 PM, Duncan Murdoch
>> wrote:
>>> On 02/07/2018 11:25 AM, Jan Gorecki wrote:
>>>> Hi,
>>>&g
>
>
>
> On Mon, Jul 2, 2018 at 5:32 PM, Duncan Murdoch
> wrote:
> > On 02/07/2018 11:25 AM, Jan Gorecki wrote:
> >> Hi,
> >> base::mean is not consistent in terms of handling NA/NaN.
> >> Mean should not depend on order of its arguments while curren
Hi,
base::mean is not consistent in terms of handling NA/NaN.
Mean should not depend on order of its arguments while currently it is.
mean(c(NA, NaN))
#[1] NA
mean(c(NaN, NA))
#[1] NaN
I created issue so in case of no replies here status of it can be looked up
at:
https://bugs.r-p
n = TRUE)
+inf <- suppressWarnings(system("timedatectl", intern = TRUE,
ignore.stderr=TRUE))
## typical format:
## " Time zone: Europe/London (GMT, +)"
## " Time zone: Europe/Vienna (CET, +0100)"
Regards,
Jan Gorecki
Hi there,
Any update on this?
Should I create bugzilla ticket and submit patch?
Regards
Jan Gorecki
On 20 December 2016 at 01:27, Jan Gorecki wrote:
> Hello,
>
> colnames seems to be not optimized well for data.frame. It escapes
> processing for data.frame in
>
> i
Hello,
colnames seems to be not optimized well for data.frame. It escapes
processing for data.frame in
if (is.data.frame(x) && do.NULL)
return(names(x))
but only when do.NULL true. This makes huge difference when do.NULL
false. Minimal edit to `colnames`:
if (is.data.frame(x)) {
ed together with R. They doesn't require any OS dependencies
>>> or R dependencies, unlike devtools which requires both. Installing
>>> unnecessary OS dependencies and R dependencies just for such a simple
>>> wrapper doesn't seem to be an elegant way to ad
Sorry for late reply. I like the stop-on-error.
Thanks for merging.
Glad to be R contributor!
On 4 November 2016 at 09:42, Oliver Keyes wrote:
> On Friday, 4 November 2016, Martin Maechler
> wrote:
>>
>> > Dirk Eddelbuettel
>> > on Fri, 4 Nov 2016 10:36:52 -0500 writes:
>>
>> >
.
Regards,
Jan
On 3 November 2016 at 17:25, Hervé Pagès wrote:
>
> Hi Martin, Jan,
>
> On 11/03/2016 03:45 AM, Martin Maechler wrote:
>>>>>>>
>>>>>>> Jan Gorecki
>>>>>>> on Tue, 1 Nov 2016 22:51:28 + writes:
>>
&
after first fail.
Do you think it could be optionally available to continue to run tests
after failures?
Regards,
Jan Gorecki
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